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BaiE/LinA-like family domain assignments
in
all bacterial genomes

Assignment details

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9 selected genomes have 13 significant domains in 13 proteins.


Anabaena variabilis ATCC 29413 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|75812753|ref|YP_320370.1|   6.76e-36   0.000000599   36-179   3cu3 A:9-170  

Nostoc punctiforme PCC 73102 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|186682376|ref|YP_001865572.1|   5.31e-41   0.000000209   10-151   3cu3 A:9-170  
 
Weak hits:
gi|186682426|ref|YP_001865622.1|   0.0000877   0.044   12-98   3ef8 A:1-149  
gi|186683352|ref|YP_001866548.1|   1.13e-31   0.0077   26-146   3cu3 A:9-170  
gi|186684209|ref|YP_001867405.1|   3.16e-21   0.053   49-184   3ef8 A:1-149  

Thermomonospora curvata DSM 43183 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|269127730|ref|YP_003301100.1|   1.04e-30   0.0000608   16-154   2rfr A:1-153  
 
Weak hits:
gi|269127418|ref|YP_003300788.1|   0.000000000000233   0.051   172-286   3ejv A:2-160  
gi|269127731|ref|YP_003301101.1|   1.08e-33   0.07   3-133   2rfr A:1-153  

Rhodococcus jostii RHA1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|111022366|ref|YP_705338.1|   1.53e-30   0.0000325   12-142   3ef8 A:1-149  
 
Weak hits:
gi|111017247|ref|YP_700219.1|   1.26e-29   0.077   1-139   3b8l A:1-144  
gi|111017551|ref|YP_700523.1|   1.88e-19   0.042   1-120   3b8l A:1-144  
gi|111017647|ref|YP_700619.1|   0.0000757   0.046   1-44   3ejv A:2-160  
gi|111017659|ref|YP_700631.1|   1.46e-28   0.011   35-182   3b8l A:1-144  
gi|111019514|ref|YP_702486.1|   6.59e-35   0.039   4-144   3b8l A:1-144  
gi|111019832|ref|YP_702804.1|   5.19e-25   0.022   8-150   2rfr A:1-153  
gi|111021645|ref|YP_704617.1|   3.7e-16   0.069   18-146   2rfr A:1-153  
gi|111021717|ref|YP_704689.1|   0.00000878   0.064   6-124   3b8l A:1-144  
gi|111022327|ref|YP_705299.1|   8.6e-17   0.074   204-313   3b8l A:1-144  
gi|111022365|ref|YP_705337.1|   2.62e-32   0.058   4-164   2rfr A:1-153  
gi|111022652|ref|YP_705624.1|   5.34e-32   0.095   10-146   3ef8 A:1-149  
gi|111022661|ref|YP_705633.1|   0.0000877   0.074   19-134   2rfr A:1-153  
gi|111022756|ref|YP_705728.1|   9.16e-34   0.00024   9-145   2rfr A:1-153  
gi|111022787|ref|YP_705759.1|   3.18e-30   0.04   14-151   3ejv A:2-160  
gi|111022887|ref|YP_705859.1|   1.03e-24   0.09   1-134   2rfr A:1-153  
gi|111023597|ref|YP_706569.1|   8.4e-27   0.063   8-153   3ejv A:2-160  
gi|111025060|ref|YP_707480.1|   0.0321   0.065   207-250   3ejv A:2-160  
gi|111025165|ref|YP_707585.1|   1.37e-25   0.046   7-121   3b8l A:1-144  
gi|111025761|ref|YP_708181.1|   3.93e-28   0.039   4-140   3b8l A:1-144  
gi|111025790|ref|YP_708210.1|   0.0000000000000023   0.043   23-162   3b8l A:1-144  
gi|111026349|ref|YP_708632.1|   2.2e-18   0.062   16-135   2rfr A:1-153  
gi|111026389|ref|YP_708672.1|   2.43e-24   0.0044   7-129   3b8l A:1-144  

Burkholderia xenovorans LB400 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|91780385|ref|YP_555592.1|   3.6e-34   0.0000798   34-166   3ef8 A:1-149  
 
Weak hits:
gi|91780269|ref|YP_555476.1|   0.000224   0.075   6-61   3ejv A:2-160  
gi|91780929|ref|YP_556136.1|   4.71e-16   0.002   9-161   2rfr A:1-153  
gi|91783713|ref|YP_558919.1|   7.17e-23   0.016   19-172   2rfr A:1-153  

Caulobacter sp. K31 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|167646359|ref|YP_001684022.1|   2.34e-32   0.0000726   20-177   3ejv A:2-160  
 
Weak hits:
gi|167644505|ref|YP_001682168.1|   1.41e-24   0.041   11-156   2rfr A:1-153  
gi|167647735|ref|YP_001685398.1|   4.3e-22   0.057   2-142   3b8l A:1-144  

Novosphingobium sp. PP1Y has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|334140864|ref|YP_004534070.1|   1.56e-35   0.00000827   5-134   3b8l A:1-144  
gi|334145028|ref|YP_004538237.1|   1.26e-31   0.0000121   15-156   2rfr A:1-153  
 
Weak hits:
gi|334140015|ref|YP_004533215.1|   2.24e-19   0.052   6-136   3b8l A:1-144  
gi|334140385|ref|YP_004533587.1|   0.00000000000907   0.056   11-129   3b8l A:1-144  
gi|334140682|ref|YP_004533884.1|   5.24e-31   0.03   5-140   3b8l A:1-144  
gi|334140708|ref|YP_004533910.1|   1.9e-21   0.018   16-196   3ef8 A:1-149  
gi|334140840|ref|YP_004534046.1|   4.58e-32   0.022   7-135   2rfr A:1-153  
gi|334140856|ref|YP_004534062.1|   7.67e-26   0.034   8-143   3ef8 A:1-149  
gi|334145022|ref|YP_004538231.1|   4.94e-33   0.049   4-143   3b8l A:1-144  
gi|334145031|ref|YP_004538240.1|   3.97e-31   0.019   24-189   3ef8 A:1-149  
gi|334145035|ref|YP_004538244.1|   2.99e-33   0.029   22-159   3b8l A:1-144  
gi|334145039|ref|YP_004538248.1|   1.46e-35   0.011   3-148   3b8l A:1-144  
gi|334145062|ref|YP_004538271.1|   3.73e-24   0.04   11-138   2rfr A:1-153  
gi|334145198|ref|YP_004538408.1|   3.77e-30   0.021   4-150   3b8l A:1-144  

Novosphingobium aromaticivorans DSM 12444 has 4 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|146275764|ref|YP_001165924.1|   4.78e-41   0.000000464   4-134   3b8l A:1-144  
gi|146275947|ref|YP_001166107.1|   1.17e-37   0.00000024   14-154   2rfr A:1-153  
gi|87199485|ref|YP_496742.1|   7.74e-39   0.000000147   1-145   3ef8 A:1-149  
gi|87200779|ref|YP_498036.1|   1.16e-33   0.0000000943   2-154   3ejv A:2-160  
 
Weak hits:
gi|146275690|ref|YP_001165850.1|   6.23e-30   0.016   4-135   2rfr A:1-153  
gi|146275753|ref|YP_001165913.1|   9.35e-30   0.0058   4-142   3b8l A:1-144  
gi|146275837|ref|YP_001165997.1|   1.68e-33   0.0091   6-173   3ef8 A:1-149  
gi|146275870|ref|YP_001166030.1|   3.47e-29   0.034   9-143   2rfr A:1-153  
gi|146275881|ref|YP_001166041.1|   8.79e-29   0.07   2-136   2rfr A:1-153  
gi|146275939|ref|YP_001166099.1|   2.8e-37   0.015   1-146   3b8l A:1-144  
gi|146275945|ref|YP_001166105.1|   1.05e-27   0.058   127-262   3b8l A:1-144  
gi|146275970|ref|YP_001166130.1|   2.8e-34   0.051   14-150   2rfr A:1-153  
gi|146276035|ref|YP_001166195.1|   5.52e-26   0.017   8-174   3b8l A:1-144  
gi|87198818|ref|YP_496075.1|   5.79e-23   0.045   17-190   2rfr A:1-153  
gi|87199481|ref|YP_496738.1|   5.61e-28   0.014   3-156   3b8l A:1-144  
gi|87199504|ref|YP_496761.1|   1.48e-26   0.042   9-154   3ef8 A:1-149  
gi|87199587|ref|YP_496844.1|   6.46e-34   0.045   8-148   3ef8 A:1-149  
gi|87200421|ref|YP_497678.1|   6.42e-28   0.044   6-127   3ef8 A:1-149  
gi|87200818|ref|YP_498075.1|   9.06e-24   0.026   15-182   3ef8 A:1-149  

Oscillatoria nigro-viridis PCC 7112 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|428314922|ref|YP_007118940.1|   1.72e-33   0.00000775   10-130   3cu3 A:9-170  
 
Weak hits:
gi|428317357|ref|YP_007115239.1|   0.00465   0.049   11-42   3b8l A:1-144  

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Select to display   Genome       Domains   Proteins
No Yes ALL   354 354
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Novosphingobium sp. PP1Y   2 2
No Yes Novosphingobium aromaticivorans DSM 12444   4 4
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes NCBI 2017_08 genome   145 145
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10 10
No Yes Uniprot 2018_03 genome   110 110
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   11 11
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   33 33
No Yes TargetDB (Targets)   7 7

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