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YegP-like superfamily domain assignments
in
Pasteurella multocida subsp. multocida str. Pm70

Assignment details

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Pasteurella multocida subsp. multocida str. Pm70 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15602384|ref|NP_245456.1|   1.02e-16   4-60   YegP-like  
  0.0000000000000314   56-109   YegP-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   63055 63055
No Yes Caenorhabditis remanei   2 1
No Yes Amphimedon queenslandica   2 1
No Yes Phytophthora capsici   1 1
No Yes Acaryochloris marina MBIC11017   4 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Kitasatospora setae KM-6054   2 2
No Yes Amycolatopsis mediterranei U32   2 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Mycobacterium chubuense NBB4   2 1
No Yes Mycobacterium marinum M   1 1
No Yes Corynebacterium ulcerans 0102   1 1
No Yes Corynebacterium pseudotuberculosis 316   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   4 4
No Yes Arthrobacter chlorophenolicus A6   4 4
No Yes Arthrobacter aurescens TC1   2 2
No Yes Arthrobacter sp. Rue61a   3 3
No Yes Arthrobacter sp. FB24   7 7
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Eubacterium limosum KIST612   2 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Enterococcus faecalis 62   2 2
No Yes Anoxybacillus flavithermus WK1   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Niastella koreensis GR20-10   2 1
No Yes Chitinophaga pinensis DSM 2588   2 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   2 1
No Yes Cytophaga hutchinsonii ATCC 33406   2 1
No Yes Spirosoma linguale DSM 74   2 1
No Yes Pedobacter saltans DSM 12145   4 2
No Yes Solitalea canadensis DSM 3403   5 2
No Yes Pedobacter heparinus DSM 2366   2 1
No Yes Sphingobacterium sp. 21   2 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Robiginitalea biformata HTCC2501   6 3
No Yes Croceibacter atlanticus HTCC2559   2 1
No Yes Aequorivita sublithincola DSM 14238   2 1
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   2 1
No Yes Cellulophaga algicola DSM 14237   2 1
No Yes Cellulophaga lytica DSM 7489   6 3
No Yes Weeksella virosa DSM 16922   2 1
No Yes Flavobacterium indicum GPTSA100-9   4 2
No Yes Flavobacterium psychrophilum JIP02/86   2 1
No Yes Flavobacterium branchiophilum FL-15   2 1
No Yes Flavobacterium columnare ATCC 49512   2 1
No Yes Flavobacterium johnsoniae UW101   4 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Sphaerochaeta globus str. Buddy   2 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Arcobacter sp. L   2 1
No Yes Syntrophobacter fumaroxidans MPOB   2 1
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfomicrobium baculatum DSM 4028   2 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. BH72   1 1
No Yes Neisseria meningitidis alpha14   1 1
No Yes Neisseria meningitidis FAM18   1 1
No Yes Thiomonas arsenitoxydans   2 1
No Yes Thiomonas intermedia K12   2 1
No Yes Leptothrix cholodnii SP-6   2 1
No Yes Burkholderia ambifaria AMMD   2 1
No Yes Burkholderia cenocepacia HI2424   2 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   2 2
No Yes Polaromonas sp. JS666   3 2
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   3 2
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   3 2
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   3 2
No Yes Collimonas fungivorans Ter331   2 1
No Yes Janthinobacterium sp. Marseille   2 1
No Yes Pusillimonas sp. T7-7   3 2
No Yes Advenella kashmirensis WT001   4 2
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Taylorella equigenitalis MCE9   1 1
No Yes Bordetella petrii DSM 12804   3 2
No Yes Bordetella avium 197N   1 1
No Yes Bordetella pertussis Tohama I   3 2
No Yes Bordetella parapertussis 12822   3 2
No Yes Bordetella bronchiseptica RB50   3 2
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Nitrosospira multiformis ATCC 25196   2 1
No Yes Methylotenera versatilis 301   2 1
No Yes Methylotenera mobilis JLW8   2 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   2 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   3 3
No Yes Methylobacterium populi BJ001   2 2
No Yes Methylobacterium nodulans ORS 2060   5 5
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   2 2
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella clarridgeiae 73   1 1
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   1 1
No Yes Bartonella quintana str. Toulouse   1 1
No Yes Bartonella bacilliformis KC583   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   2 1
No Yes Cellvibrio japonicus Ueda107   2 1
No Yes Aggregatibacter aphrophilus NJ8700   2 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   2 1
No Yes Gallibacterium anatis UMN179   1 1
No Yes Pasteurella multocida subsp. multocida str. 3480   2 1
No Yes Haemophilus parasuis SH0165   2 2
No Yes Haemophilus parainfluenzae T3T1   2 1
No Yes Haemophilus influenzae PittEE   1 1
No Yes Actinobacillus succinogenes 130Z   2 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Shewanella piezotolerans WP3   2 1
No Yes Shewanella oneidensis MR-1   2 1
No Yes Shewanella sp. MR-4   2 1
No Yes Marinobacter aquaeolei VT8   2 1
No Yes Kangiella koreensis DSM 16069   4 2
No Yes Methylomonas methanica MC09   2 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Photorhabdus asymbiotica   2 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Edwardsiella ictaluri 93-146   2 1
No Yes Edwardsiella tarda EIB202   2 1
No Yes Rahnella sp. Y9602   2 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   2 1
No Yes Yersinia pseudotuberculosis IP 31758   2 1
No Yes Yersinia pestis Pestoides F   2 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 1
No Yes Serratia sp. AS12   2 1
No Yes Serratia plymuthica AS9   2 1
No Yes Serratia proteamaculans 568   2 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   2 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Shigella sonnei Ss046   2 1
No Yes Shigella flexneri 5 str. 8401   2 1
No Yes Shigella boydii CDC 3083-94   2 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   2 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   2 1
No Yes Enterobacter asburiae LF7a   2 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   2 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   3 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   4 3
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas stutzeri A1501   3 2
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   4 3
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   3 2
No Yes Pseudomonas sp. VLB120   1 1
No Yes Acinetobacter oleivorans DR1   2 1
No Yes Acinetobacter calcoaceticus PHEA-2   2 1
No Yes Acinetobacter baumannii ATCC 17978   2 1
No Yes Acinetobacter sp. ADP1   2 1
No Yes halophilic archaeon DL31   7 3
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Thermoplasmatales archaeon BRNA1   2 1
No Yes Salinarchaeum sp. Harcht-Bsk1   16 2
No Yes Halopiger xanaduensis SH-6   23 3
No Yes Haloterrigena turkmenica DSM 5511   11 2
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   23 3
No Yes Halorubrum lacusprofundi ATCC 49239   8 3
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   7 2
No Yes Halorhabdus utahensis DSM 12940   17 3
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   7 2
No Yes Haloarcula marismortui ATCC 43049   7 2
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Gordonibacter pamelaeae 7-10-1-b   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   2 1
No Yes Amycolatopsis mediterranei S699   2 1
No Yes Amycolatopsis mediterranei S699   2 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Nocardia brasiliensis ATCC 700358   2 2
No Yes Mycobacterium intracellulare MOTT-02   2 1
No Yes Corynebacterium ulcerans BR-AD22   1 1
No Yes Corynebacterium ulcerans 809   1 1
No Yes Corynebacterium pseudotuberculosis 258   1 1
No Yes Corynebacterium pseudotuberculosis Cp162   1 1
No Yes Corynebacterium pseudotuberculosis P54B96   1 1
No Yes Corynebacterium pseudotuberculosis 267   1 1
No Yes Corynebacterium pseudotuberculosis 1/06-A   1 1
No Yes Corynebacterium pseudotuberculosis 42/02-A   1 1
No Yes Corynebacterium pseudotuberculosis 3/99-5   1 1
No Yes Corynebacterium pseudotuberculosis 31   1 1
No Yes Corynebacterium pseudotuberculosis CIP 52.97   1 1
No Yes Corynebacterium pseudotuberculosis PAT10   1 1
No Yes Corynebacterium pseudotuberculosis I19   1 1
No Yes Corynebacterium pseudotuberculosis FRC41   1 1
No Yes Corynebacterium pseudotuberculosis C231   1 1
No Yes Corynebacterium pseudotuberculosis 1002   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   2 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Enterococcus faecium Aus0085   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Lactobacillus plantarum WCFS1   1 1
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Streptococcus suis D12   1 1
No Yes Nonlabens dokdonensis DSW-6   2 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Arcobacter butzleri ED-1   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Desulfovibrio desulfuricans ND132   2 1
No Yes Neisseria meningitidis WUE 2594   2 2
No Yes Neisseria meningitidis G2136   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis M01-240355   1 1
No Yes Neisseria meningitidis 8013   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   2 2
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Pandoraea pnomenusa 3kgm   2 1
No Yes Burkholderia cenocepacia MC0-3   2 1
No Yes Burkholderia cenocepacia AU 1054   2 1
No Yes Burkholderia cenocepacia J2315   2 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Taylorella asinigenitalis 14/45   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Taylorella equigenitalis ATCC 35865   1 1
No Yes Bordetella pertussis CS   3 2
No Yes Bordetella parapertussis 18323   3 2
No Yes Bordetella parapertussis Bpp5   3 2
No Yes Bordetella bronchiseptica MO149   3 2
No Yes Bordetella bronchiseptica 253   3 2
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   3 2
No Yes Caulobacter crescentus CB15   1 1
No Yes Leisingera methylohalidivorans DSM 14336   2 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Hyphomicrobium nitrativorans NL23   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Bartonella australis Aust/NH1   1 1
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   1 1
No Yes Mannheimia succiniciproducens MBEL55E   2 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 1
No Yes Aggregatibacter actinomycetemcomitans D11S-1   2 1
No Yes Haemophilus somnus 2336   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Pasteurella multocida 36950   2 1
No Yes Pasteurella multocida subsp. multocida str. HN06   2 1
No Yes Pasteurella multocida subsp. multocida str. Pm70   2 1
No Yes Haemophilus parasuis ZJ0906   3 3
No Yes Haemophilus influenzae 10810   2 2
No Yes Haemophilus influenzae PittGG   1 1
No Yes Haemophilus influenzae R2866   1 1
No Yes Haemophilus influenzae R2846   1 1
No Yes Actinobacillus suis H91-0380   1 1
No Yes Actinobacillus pleuropneumoniae serovar 3 str. JL03   1 1
No Yes Actinobacillus pleuropneumoniae serovar 7 str. AP76   1 1
No Yes Shewanella sp. ANA-3   2 1
No Yes Shewanella baltica OS117   2 1
No Yes Shewanella baltica OS155   2 1
No Yes Shewanella putrefaciens 200   2 1
No Yes Alcanivorax dieselolei B5   2 1
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Edwardsiella tarda C07-087   2 1
No Yes Edwardsiella tarda FL6-60   2 1
No Yes Rahnella aquatilis HX2   2 1
No Yes Yersinia pseudotuberculosis PB1/+   2 1
No Yes Yersinia pseudotuberculosis YPIII   2 1
No Yes Yersinia pseudotuberculosis IP 32953   2 1
No Yes Yersinia pestis biovar Microtus str. 91001   2 1
No Yes Yersinia pestis A1122   2 1
No Yes Yersinia pestis Z176003   2 1
No Yes Yersinia pestis D182038   2 1
No Yes Yersinia pestis D106004   2 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   2 1
No Yes Yersinia pestis Nepal516   2 1
No Yes Yersinia pestis Antiqua   2 1
No Yes Yersinia pestis Angola   2 1
No Yes Yersinia pestis CO92   2 1
No Yes Yersinia pestis KIM10+   2 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   2 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   2 1
No Yes Serratia sp. AS13   2 1
No Yes Serratia plymuthica S13   2 1
No Yes Serratia plymuthica 4Rx13   2 1
No Yes Serratia marcescens FGI94   2 1
No Yes Serratia marcescens WW4   2 1
No Yes Serratia liquefaciens ATCC 27592   2 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella sonnei 53G   2 1
No Yes Shigella flexneri 2002017   2 1
No Yes Shigella flexneri 2a str. 2457T   2 1
No Yes Shigella flexneri 2a str. 301   2 1
No Yes Shigella dysenteriae 1617   2 1
No Yes Shigella boydii Sb227   2 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   2 1
No Yes Escherichia coli E. coli PMV-1   2 1
No Yes Escherichia coli JJ1886   2 1
No Yes Escherichia coli LY180   2 1
No Yes Escherichia coli APEC O78   2 1
No Yes Escherichia coli O7:K1 str. CE10   2 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   2 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   2 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   2 1
No Yes Escherichia coli NA114   2 1
No Yes Escherichia coli P12b   2 1
No Yes Escherichia coli str. 'clone D i2'   2 1
No Yes Escherichia coli str. 'clone D i14'   2 1
No Yes Escherichia coli UM146   2 1
No Yes Escherichia coli 042   2 1
No Yes Escherichia coli Xuzhou21   2 1
No Yes Escherichia coli IHE3034   2 1
No Yes Escherichia coli UMNK88   2 1
No Yes Escherichia coli O83:H1 str. NRG 857C   2 1
No Yes Escherichia coli ABU 83972   2 1
No Yes Escherichia coli KO11FL   2 1
No Yes Escherichia coli KO11FL   2 1
No Yes Escherichia coli LF82   2 1
No Yes Escherichia coli ED1a   2 1
No Yes Escherichia coli IAI39   2 1
No Yes Escherichia coli UMN026   2 1
No Yes Escherichia coli 55989   2 1
No Yes Escherichia coli S88   2 1
No Yes Escherichia coli IAI1   2 1
No Yes Escherichia coli W   2 1
No Yes Escherichia coli W   2 1
No Yes Escherichia coli DH1   2 1
No Yes Escherichia coli DH1   2 1
No Yes Escherichia coli ATCC 8739   2 1
No Yes Escherichia coli BL21(DE3)   2 1
No Yes Escherichia coli BL21(DE3)   2 1
No Yes Escherichia coli SMS-3-5   2 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   2 1
No Yes Escherichia coli APEC O1   2 1
No Yes Escherichia coli O103:H2 str. 12009   2 1
No Yes Escherichia coli UTI89   2 1
No Yes Escherichia coli 536   2 1
No Yes Escherichia coli HS   2 1
No Yes Escherichia coli ETEC H10407   2 1
No Yes Escherichia coli O55:H7 str. RM12579   2 1
No Yes Escherichia coli O55:H7 str. CB9615   2 1
No Yes Escherichia coli O26:H11 str. 11368   2 1
No Yes Escherichia coli CFT073   2 1
No Yes Escherichia coli O111:H- str. 11128   2 1
No Yes Escherichia coli O127:H6 str. E2348/69   2 1
No Yes Escherichia coli O157:H7 str. TW14359   2 1
No Yes Escherichia coli O157:H7 str. EC4115   2 1
No Yes Escherichia coli O157:H7 str. Sakai   2 1
No Yes Escherichia coli O157:H7 str. EDL933   2 1
No Yes Escherichia coli BW2952   2 1
No Yes Escherichia coli str. K-12 substr. MG1655   2 1
No Yes Escherichia coli str. K-12 substr. W3110   2 1
No Yes Escherichia coli str. K-12 substr. DH10B   2 1
No Yes Escherichia coli B str. REL606   2 1
No Yes Enterobacter cloacae EcWSU1   2 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   3 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri CCUG 29243   3 2
No Yes Pseudomonas stutzeri DSM 10701   3 2
No Yes Pseudomonas stutzeri DSM 4166   3 2
No Yes Pseudomonas stutzeri RCH2   3 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   3 2
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   4 3
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   4 3
No Yes Pseudomonas fluorescens A506   3 2
No Yes Pseudomonas fluorescens R124   4 3
No Yes Pseudomonas fluorescens Pf0-1   4 3
No Yes Pseudomonas resinovorans NBRC 106553   5 3
No Yes Pseudomonas mendocina NK-01   3 2
No Yes Pseudomonas aeruginosa SCV20265   3 2
No Yes Pseudomonas aeruginosa MTB-1   3 2
No Yes Pseudomonas aeruginosa LES431   3 2
No Yes Pseudomonas aeruginosa RP73   3 2
No Yes Pseudomonas aeruginosa B136-33   3 2
No Yes Pseudomonas aeruginosa PA1R   3 2
No Yes Pseudomonas aeruginosa PA1   3 2
No Yes Pseudomonas aeruginosa DK2   3 2
No Yes Pseudomonas aeruginosa NCGM2.S1   3 2
No Yes Pseudomonas aeruginosa M18   3 2
No Yes Pseudomonas aeruginosa LESB58   3 2
No Yes Pseudomonas aeruginosa PA7   3 2
No Yes Pseudomonas aeruginosa PAO1   3 2
No Yes Acinetobacter genomosp. 13TU RUH2624   2 1
No Yes Acinetobacter sp. SH024   2 1
No Yes Acinetobacter calcoaceticus ruh2202   2 1
No Yes Acinetobacter baumannii ZW85-1   2 1
No Yes Acinetobacter baumannii TYTH-1   2 1
No Yes Acinetobacter baumannii BJAB0868   2 1
No Yes Acinetobacter baumannii BJAB0715   2 1
No Yes Acinetobacter baumannii BJAB07104   2 1
No Yes Acinetobacter baumannii TCDC-AB0715   2 1
No Yes Acinetobacter baumannii D1279779   2 1
No Yes Acinetobacter baumannii MDR-TJ   2 1
No Yes Acinetobacter baumannii 1656-2   2 1
No Yes Acinetobacter baumannii ATCC 19606   2 1
No Yes Acinetobacter baumannii AB307-0294   2 1
No Yes Acinetobacter baumannii AYE   2 1
No Yes Acinetobacter baumannii SDF   2 1
No Yes Acinetobacter baumannii MDR-ZJ06   2 1
No Yes Acinetobacter baumannii AB0057   2 1
No Yes Acinetobacter baumannii ACICU   2 1
No Yes Acinetobacter junii SH205   2 1
No Yes Acinetobacter johnsonii SH046   2 1
No Yes Methylophaga sp. JAM7   2 1
No Yes Halovivax ruber XH-70   12 2
No Yes Natrinema pellirubrum DSM 15624   13 2
No Yes Natronococcus occultus SP4   1 1
No Yes Natronobacterium gregoryi SP2   9 1
No Yes Halorhabdus tiamatea SARL4B   17 3
No Yes Haloarcula hispanica N601   7 2
No Yes 2_050719S (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   7 7
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   5 5
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   5 4
No Yes Combined (meta-genome)   19 15
No Yes Crater Hills (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   15 12
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   8 7
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   10 7
No Yes Dump bottom (Dump bottom) (meta-genome)   45 37
No Yes Dump top (Dump top) (meta-genome)   33 28
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   6 5
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   3 2
No Yes Fungus garden combined (combined) (meta-genome)   8 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   12 11
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   22 18
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   6 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   7 5
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   3 3
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   30 17
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   20 11
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   5 3
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   5 5
No Yes NCBI 2017_08 genome   50738 31001
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   10 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   6 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Jazz Assembly (meta-genome)   7 4
No Yes Sludge/US, Phrap Assembly (meta-genome)   10 6
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   13 9
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   12 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   7 7
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   435 291
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   14 12
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   9601 6294
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   96 54
No Yes NCBI plasmid sequences (Plasmids)   28 15
No Yes NCBI viral sequences (Viral)   17 17
No Yes PDB chains (SCOP 1.75) (PDB)   6 4
No Yes Protein Data Bank (all PDB sequenc)   14 12
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   38 38
No Yes TargetDB (Targets)   52 33
No Yes UniProt viral sequences (Viral)   14 14

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