SUPERFAMILY 1.75 HMM library and genome assignments server

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NMB0488-like superfamily domain assignments
in
Monodelphis domestica 69_5

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   4715 4715
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Eubacterium rectale M104/1   2 2
No Yes Coprococcus sp. ART55/1   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Neisseria meningitidis FAM18   1 1
No Yes Neisseria lactamica 020-06   2 2
No Yes Neisseria gonorrhoeae NCCP11945   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Gallibacterium anatis UMN179   1 1
No Yes Pasteurella multocida subsp. multocida str. 3480   1 1
No Yes Haemophilus parainfluenzae T3T1   1 1
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   3 3
No Yes Pectobacterium wasabiae WPP163   4 4
No Yes Pectobacterium sp. SCC3193   3 3
No Yes Bifidobacterium thermophilum RBL67   2 2
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis M01-240355   1 1
No Yes Neisseria meningitidis 8013   1 1
No Yes Neisseria meningitidis H44/76   2 2
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   2 2
No Yes Neisseria gonorrhoeae TCDC-NG08107   1 1
No Yes Neisseria gonorrhoeae FA 1090   1 1
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Pasteurella multocida subsp. multocida str. Pm70   2 2
No Yes Proteus mirabilis BB2000   2 2
No Yes Morganella morganii subsp. morganii KT   2 2
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   4106 4106
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   27 27
No Yes Uniprot 2018_03 genome   441 438
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   6 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   12 12
No Yes TargetDB (Targets)   4 4
No Yes The Salmonella enterica Pan-genome (meta-genome)   5 5

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