SUPERFAMILY 1.75 HMM library and genome assignments server

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Bacterial polysaccharide co-polymerase-like superfamily domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 27 significant domains in 27 proteins.

Showing genomes 1 to 25 of 302
  1 2 3 4 5 6 7 8 9 10 11   Next Last

Caldicellulosiruptor obsidiansis OB47 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|302871962|ref|YP_003840598.1|   0.00000562   54-193   FepE-like  

Caldicellulosiruptor kronotskyensis 2002 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312622526|ref|YP_004024139.1|   0.0000157   56-192   FepE-like  

Caldicellulosiruptor hydrothermalis 108 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312127701|ref|YP_003992575.1|   0.00000981   57-193   FepE-like  
 
Weak hits:
gi|312126660|ref|YP_003991534.1|   0.00726   3-44   FepE-like  

Caldicellulosiruptor owensensis OL has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312135052|ref|YP_004002390.1|   0.0000249   59-194   FepE-like  
 
Weak hits:
gi|312135971|ref|YP_004003309.1|   0.018   16-117   FepE-like  
gi|312136178|ref|YP_004003516.1|   0.0017   181-249   FepE-like  

Caldicellulosiruptor lactoaceticus 6A has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|344995911|ref|YP_004798254.1|   0.0000196   57-193   FepE-like  
 
Weak hits:
gi|344997155|ref|YP_004799498.1|   0.00222   16-82   FepE-like  

Caldicellulosiruptor kristjanssonii 177R1B has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312793415|ref|YP_004026338.1|   0.0000157   57-193   FepE-like  
 
Weak hits:
gi|312792655|ref|YP_004025578.1|   0.00222   16-82   FepE-like  

Caldicellulosiruptor saccharolyticus DSM 8903 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|146296806|ref|YP_001180577.1|   0.000000249   54-193   FepE-like  
 
Weak hits:
gi|146295658|ref|YP_001179429.1|   0.00549   6-69   FepE-like  

Caldicellulosiruptor bescii DSM 6725 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|222529227|ref|YP_002573109.1|   0.0000157   57-193   FepE-like  
 
Weak hits:
gi|222530250|ref|YP_002574132.1|   0.0135   14-117   FepE-like  
gi|222530386|ref|YP_002574268.1|   0.00235   3-48   FepE-like  

Rhodothermus marinus DSM 4252 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|268318166|ref|YP_003291885.1|   0.0000824   49-206   FepE-like  

Campylobacter hominis ATCC BAA-381 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|154149399|ref|YP_001406017.1|   0.000085   90-237   FepE-like  
 
Weak hits:
gi|154147863|ref|YP_001405622.1|   0.0687   259-364   FepE-like  
gi|154149255|ref|YP_001405951.1|   0.0549   61-144   FepE-like  

Desulfotalea psychrophila LSv54 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|51243902|ref|YP_063786.1|   0.00000693   132-317   FepE-like  
gi|51243903|ref|YP_063787.1|   0.00000011   241-341   FepE-like  
  0.00379   98-234   FepE-like  

Pusillimonas sp. T7-7 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|332283530|ref|YP_004415441.1|   1.31e-25   49-303   FepE-like  

Saccharophagus degradans 2-40 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|90019782|ref|YP_525609.1|   0.0000589   122-239   FepE-like  
 
Weak hits:
gi|90020211|ref|YP_526038.1|   0.00405   175-261   FepE-like  
gi|90021557|ref|YP_527384.1|   0.00759   40-75   FepE-like  

Teredinibacter turnerae T7901 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|254788321|ref|YP_003075750.1|   0.00000654   59-216   FepE-like  

Gallibacterium anatis UMN179 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|332288388|ref|YP_004419240.1|   1.31e-29   50-337   FepE-like  
gi|332290191|ref|YP_004421043.1|   7.06e-51   77-368   FepE-like  

Pasteurella multocida subsp. multocida str. 3480 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386834422|ref|YP_006239738.1|   9.03e-38   43-238   FepE-like  
 
Weak hits:
gi|386834071|ref|YP_006239386.1|   0.0255   79-263   FepE-like  
gi|386835565|ref|YP_006240884.1|   0.000235   93-194   FepE-like  

Haemophilus parainfluenzae T3T1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|345428872|ref|YP_004821988.1|   1.31e-56   52-338   FepE-like  

Actinobacillus succinogenes 130Z has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|152978489|ref|YP_001344118.1|   2.22e-43   53-307   FepE-like  

Actinobacillus pleuropneumoniae serovar 5b str. L20 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126209017|ref|YP_001054242.1|   4.97e-36   31-253   FepE-like  

Tolumonas auensis DSM 9187 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|237808800|ref|YP_002893240.1|   8.5e-59   63-335   FepE-like  

Aeromonas veronii B565 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|330830473|ref|YP_004393425.1|   2.75e-50   58-329   FepE-like  

Vibrio splendidus LGP32 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|218708299|ref|YP_002415920.1|   5.49e-61   61-337   FepE-like  

Psychromonas ingrahamii 37 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|119944100|ref|YP_941780.1|   2.22e-52   20-308   FepE-like  
 
Weak hits:
gi|119946288|ref|YP_943968.1|   0.000419   92-109,145-225   FepE-like  

Psychromonas sp. CNPT3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|470478546|ref|YP_007639290.1|   8.24e-52   59-343   FepE-like  

Marinomonas posidonica IVIA-Po-181 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|333906832|ref|YP_004480418.1|   1.31e-44   64-339   FepE-like  

  1 2 3 4 5 6 7 8 9 10 11   Next Last
Showing genomes 1 to 25 of 302

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Select to display   Genome       Domains   Proteins
No Yes ALL   70011 70011
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Sorghum bicolor Sorghum 1 1
No Yes Caldicellulosiruptor obsidiansis OB47   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Campylobacter hominis ATCC BAA-381   1 1
No Yes Desulfotalea psychrophila LSv54   2 2
No Yes Pusillimonas sp. T7-7   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Gallibacterium anatis UMN179   2 2
No Yes Pasteurella multocida subsp. multocida str. 3480   1 1
No Yes Haemophilus parainfluenzae T3T1   1 1
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   1 1
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Aeromonas veronii B565   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Photorhabdus asymbiotica   2 2
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 2
No Yes Xenorhabdus bovienii SS-2004   2 2
No Yes Xenorhabdus nematophila ATCC 19061   2 2
No Yes Providencia stuartii MRSN 2154   2 2
No Yes Proteus mirabilis HI4320   2 2
No Yes Edwardsiella ictaluri 93-146   2 2
No Yes Edwardsiella tarda EIB202   3 3
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia pseudotuberculosis IP 31758   2 2
No Yes Yersinia pestis Pestoides F   2 2
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 2
No Yes Serratia sp. AS12   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Sodalis glossinidius str. 'morsitans'   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   3 3
No Yes Cronobacter sakazakii ES15   3 3
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   3 3
No Yes Shigella sonnei Ss046   4 4
No Yes Shigella flexneri 5 str. 8401   2 2
No Yes Shigella dysenteriae Sd197   3 3
No Yes Shigella boydii CDC 3083-94   3 3
No Yes Salmonella bongori NCTC 12419   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   3 3
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   3 3
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   3 3
No Yes Enterobacter sp. R4-368   2 2
No Yes Enterobacter sp. 638   2 2
No Yes Enterobacter asburiae LF7a   3 3
No Yes Enterobacter cloacae subsp. dissolvens SDM   3 3
No Yes Citrobacter rodentium ICC168   2 2
No Yes Citrobacter koseri ATCC BAA-895   3 3
No Yes Pseudomonas sp. TKP   4 2
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas fluorescens SBW25   2 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   3 2
No Yes Pseudomonas sp. VLB120   2 2
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Thioalkalimicrobium cyclicum ALM1   2 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Mannheimia succiniciproducens MBEL55E   2 2
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   1 1
No Yes Mannheimia haemolytica USMARC_2286   2 2
No Yes Mannheimia haemolytica M42548   2 2
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   2 2
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   2 2
No Yes Pasteurella multocida 36950   1 1
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Pasteurella multocida subsp. multocida str. Pm70   1 1
No Yes Haemophilus influenzae F3047   1 1
No Yes Haemophilus influenzae F3031   1 1
No Yes Haemophilus influenzae 10810   2 2
No Yes Haemophilus influenzae PittGG   2 2
No Yes Haemophilus influenzae 86-028NP   1 1
No Yes Haemophilus influenzae R2866   2 2
No Yes Haemophilus influenzae R2846   2 2
No Yes Haemophilus influenzae Rd KW20   2 2
No Yes Actinobacillus suis H91-0380   2 2
No Yes Actinobacillus pleuropneumoniae serovar 3 str. JL03   2 2
No Yes Actinobacillus pleuropneumoniae serovar 7 str. AP76   2 2
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Proteus mirabilis BB2000   2 2
No Yes Morganella morganii subsp. morganii KT   2 2
No Yes Edwardsiella tarda C07-087   3 3
No Yes Edwardsiella tarda FL6-60   3 3
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis PB1/+   2 2
No Yes Yersinia pseudotuberculosis YPIII   2 2
No Yes Yersinia pseudotuberculosis IP 32953   2 2
No Yes Yersinia pestis biovar Microtus str. 91001   2 2
No Yes Yersinia pestis A1122   2 2
No Yes Yersinia pestis Z176003   2 2
No Yes Yersinia pestis D182038   2 2
No Yes Yersinia pestis D106004   2 2
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   2 2
No Yes Yersinia pestis Nepal516   2 2
No Yes Yersinia pestis Antiqua   2 2
No Yes Yersinia pestis Angola   2 2
No Yes Yersinia pestis CO92   2 2
No Yes Yersinia pestis KIM10+   2 2
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Dickeya dadantii 3937   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   2 2
No Yes Pantoea ananatis PA13   2 2
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Cronobacter sakazakii CMCC 45402   3 3
No Yes Cronobacter sakazakii SP291   3 3
No Yes Cronobacter sakazakii ATCC BAA-894   3 3
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella sonnei 53G   4 4
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   2 2
No Yes Shigella flexneri 2a str. 301   2 2
No Yes Shigella dysenteriae 1617   3 3
No Yes Shigella boydii Sb227   3 3
No Yes Salmonella bongori N268-08   3 3
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   3 3
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   3 3
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   3 3
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   3 3
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   3 3
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   3 3
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   3 3
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   3 3
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   3 3
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   3 3
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   2 2
No Yes Salmonella enterica serovar Bovismorbificans genomics   3 3
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   3 3
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   3 3
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   3 3
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   3 3
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   3 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   3 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   3 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   3 3
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   3 3
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   3 3
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   3 3
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   3 3
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   3 3
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   3 3
No Yes Escherichia coli E. coli PMV-1   3 3
No Yes Escherichia coli JJ1886   3 3
No Yes Escherichia coli LY180   3 3
No Yes Escherichia coli APEC O78   3 3
No Yes Escherichia coli O7:K1 str. CE10   3 3
No Yes Escherichia coli O104:H4 str. 2009EL-2050   3 3
No Yes Escherichia coli O104:H4 str. 2009EL-2071   3 3
No Yes Escherichia coli O104:H4 str. 2011C-3493   3 3
No Yes Escherichia coli NA114   3 3
No Yes Escherichia coli P12b   2 2
No Yes Escherichia coli str. 'clone D i2'   3 3
No Yes Escherichia coli str. 'clone D i14'   3 3
No Yes Escherichia coli UM146   3 3
No Yes Escherichia coli 042   3 3
No Yes Escherichia coli Xuzhou21   3 3
No Yes Escherichia coli IHE3034   3 3
No Yes Escherichia coli UMNK88   3 3
No Yes Escherichia coli O83:H1 str. NRG 857C   3 3
No Yes Escherichia coli ABU 83972   3 3
No Yes Escherichia coli KO11FL   3 3
No Yes Escherichia coli KO11FL   3 3
No Yes Escherichia coli LF82   3 3
No Yes Escherichia coli ED1a   3 3
No Yes Escherichia coli IAI39   3 3
No Yes Escherichia coli UMN026   3 3
No Yes Escherichia coli 55989   3 3
No Yes Escherichia coli S88   3 3
No Yes Escherichia coli IAI1   3 3
No Yes Escherichia coli W   3 3
No Yes Escherichia coli W   3 3
No Yes Escherichia coli DH1   3 3
No Yes Escherichia coli DH1   3 3
No Yes Escherichia coli ATCC 8739   3 3
No Yes Escherichia coli BL21(DE3)   3 3
No Yes Escherichia coli BL21(DE3)   3 3
No Yes Escherichia coli SMS-3-5   3 3
No Yes Escherichia coli SE15   3 3
No Yes Escherichia coli SE11   3 3
No Yes Escherichia coli APEC O1   3 3
No Yes Escherichia coli O103:H2 str. 12009   3 3
No Yes Escherichia coli UTI89   3 3
No Yes Escherichia coli 536   3 3
No Yes Escherichia coli HS   2 2
No Yes Escherichia coli ETEC H10407   3 3
No Yes Escherichia coli O55:H7 str. RM12579   3 3
No Yes Escherichia coli O55:H7 str. CB9615   3 3
No Yes Escherichia coli O26:H11 str. 11368   3 3
No Yes Escherichia coli CFT073   3 3
No Yes Escherichia coli O111:H- str. 11128   3 3
No Yes Escherichia coli O127:H6 str. E2348/69   2 2
No Yes Escherichia coli O157:H7 str. TW14359   3 3
No Yes Escherichia coli O157:H7 str. EC4115   3 3
No Yes Escherichia coli O157:H7 str. Sakai   3 3
No Yes Escherichia coli O157:H7 str. EDL933   3 3
No Yes Escherichia coli str. K-12 substr. MDS42   3 3
No Yes Escherichia coli BW2952   3 3
No Yes Escherichia coli str. K-12 substr. MG1655   3 3
No Yes Escherichia coli str. K-12 substr. W3110   3 3
No Yes Escherichia coli str. K-12 substr. DH10B   4 4
No Yes Escherichia coli B str. REL606   3 3
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   3 3
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   3 3
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   3 3
No Yes Pseudomonas denitrificans ATCC 13867   3 2
No Yes Pseudomonas stutzeri DSM 10701   4 2
No Yes Pseudomonas stutzeri RCH2   4 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   4 2
No Yes Pseudomonas putida HB3267   2 2
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas poae RE*1-1-14   4 2
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   4 2
No Yes Pseudomonas resinovorans NBRC 106553   3 2
No Yes Pseudomonas aeruginosa SCV20265   2 1
No Yes Pseudomonas aeruginosa MTB-1   3 2
No Yes Pseudomonas aeruginosa LES431   3 2
No Yes Pseudomonas aeruginosa RP73   3 2
No Yes Pseudomonas aeruginosa B136-33   3 2
No Yes Pseudomonas aeruginosa PA1R   2 1
No Yes Pseudomonas aeruginosa PA1   2 1
No Yes Pseudomonas aeruginosa DK2   3 2
No Yes Pseudomonas aeruginosa NCGM2.S1   2 1
No Yes Pseudomonas aeruginosa M18   3 2
No Yes Pseudomonas aeruginosa LESB58   3 2
No Yes Pseudomonas aeruginosa PA7   3 2
No Yes Pseudomonas aeruginosa PAO1   3 2
No Yes 1_050719N (meta-genome)   3 3
No Yes 2_050719S (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   3 3
No Yes 5_050719P (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   23 23
No Yes Combined (meta-genome)   52 52
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   53 53
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   10 10
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   13 12
No Yes Dump bottom (Dump bottom) (meta-genome)   13 13
No Yes Dump top (Dump top) (meta-genome)   12 12
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   34 34
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   70 69
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   80 80
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   4 4
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   5 4
No Yes NCBI 2017_08 genome   63815 60878
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   258 253
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   6 6
No Yes Uniprot 2018_03 genome   4122 3783
No Yes Global Ocean Sampling Expedition (GOS)   108 108
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   91 91
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   200 200
No Yes TargetDB (Targets)   13 13
No Yes The Salmonella enterica Pan-genome (meta-genome)   91 91

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