SUPERFAMILY 1.75 HMM library and genome assignments server

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PG1857-like superfamily domain assignments
in
Escherichia coli B str. REL606

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   1299 1299
No Yes Halanaerobium praevalens DSM 2228   1 1
No Yes Chlorobium phaeovibrioides DSM 265   1 1
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chlorobium tepidum TLS   1 1
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   1 1
No Yes Porphyromonas gingivalis ATCC 33277   1 1
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   1 1
No Yes Porphyromonas gingivalis TDC60   1 1
No Yes Porphyromonas gingivalis W83   1 1
No Yes Alistipes shahii WAL 8301   1 1
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   3 3
No Yes NCBI 2017_08 genome   700 700
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   22 22
No Yes Uniprot 2018_03 genome   468 467
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6
No Yes TargetDB (Targets)   1 1

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