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Viral glycoprotein ectodomain-like superfamily domain assignments
in
PDB chains (SCOP 1.75)

Network of domain occurrence in all genomes


Assignment details

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PDB chains (SCOP 1.75) (PDB) has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
2cmzA   3.66e-152   1-409   Spike glycoprotein-like  
2gumA   4.39e-240   10-622   Glycoprotein B-like  
2j6jA   3.66e-152   1-409   Spike glycoprotein-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   12764 12764
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 1
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Caenorhabditis japonica   13 13
No Yes Caenorhabditis brenneri   10 10
No Yes Caenorhabditis remanei   17 17
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes NCBI 2017_08 genome   210 207
No Yes STRING v9.0.5 (STRING)   37 36
No Yes Uniprot 2018_03 genome   8742 8728
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   93 93
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   61 61
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   202 189
No Yes TargetDB (Targets)   3 3
No Yes UniProt viral sequences (Viral)   3323 3322

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