SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Photosystem II antenna protein-like superfamily domain assignments
in
all eukaryotic genomes

Assignment details

(show help)

25 selected genomes have 127 significant domains in 125 proteins.

Showing genomes 1 to 25 of 66
  1 2 3   Next Last

Selaginella moellendorffii has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Selmo1|137689|e_gw1.175.162.1   1.23e-198   28-472   Photosystem II antenna protein-like  
jgi|Selmo1|137729|e_gw1.175.204.1   1.83e-178   2-487   Photosystem II antenna protein-like  

Pinus taeda has 7 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
PITA_000030945-RA   2.22e-34   149-288   Photosystem II antenna protein-like  
  2.62e-17   1-112   Photosystem II antenna protein-like  
PITA_000030947-RA   0.00000000288   1-59   Photosystem II antenna protein-like  
PITA_000033687-RA   1.02e-35   73-240   Photosystem II antenna protein-like  
PITA_000041602-RA   2.22e-23   1-169   Photosystem II antenna protein-like  
PITA_000041603-RA   5.75e-23   47-127   Photosystem II antenna protein-like  
PITA_000083518-RA   0.0000000000144   317-353   Photosystem II antenna protein-like  

Eucalyptus grandis v201 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Eucgr.A00264.1|PACid:23561978   1.91e-57   1-130   Photosystem II antenna protein-like  
Eucgr.B02132.1|PACid:23567219   6.93e-30   1-75   Photosystem II antenna protein-like  
Eucgr.F01309.1|PACid:23581998   5.89e-19   10-65   Photosystem II antenna protein-like  
 
Weak hits:
Eucgr.G00037.1|PACid:23585813   0.0288   513-561   Photosystem II antenna protein-like  
Eucgr.H01967.1|PACid:23591352   0.0275   38-62   Photosystem II antenna protein-like  

Theobroma cacao B97-61/B2 v1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
Tc00_g040750   0.00000107   17-68   Photosystem II antenna protein-like  
Tc01_g034980   0.00000379   4-60   Photosystem II antenna protein-like  
Tc04_g003810   3.53e-229   2-488   Photosystem II antenna protein-like  
Tc04_g003900   2.62e-198   350-785   Photosystem II antenna protein-like  
Tc05_g008880   3.79e-59   11-234   Photosystem II antenna protein-like  
Tc05_g019850   0.000000000000314   260-334   Photosystem II antenna protein-like  
 
Weak hits:
Tc03_g030750   0.0837   258-322   Photosystem II antenna protein-like  
Tc05_g000730   0.0759   352-379   Photosystem II antenna protein-like  

Gossypium raimondii v221 has 18 significant domains in 18 proteins.

     

Sequence ID   Evalue   Region   Family  
Gorai.001G099800.1|PACid:26824193   1.7e-98   2-261   Photosystem II antenna protein-like  
Gorai.001G201300.1|PACid:26822802   3.27e-24   3-68   Photosystem II antenna protein-like  
Gorai.001G244900.1|PACid:26821953   3.79e-54   1-141   Photosystem II antenna protein-like  
Gorai.002G148800.1|PACid:26796399   8.37e-19   34-89   Photosystem II antenna protein-like  
Gorai.002G254300.1|PACid:26792035   0.0000000000000139   16-79   Photosystem II antenna protein-like  
Gorai.003G087600.1|PACid:26798149   4.97e-34   2-85   Photosystem II antenna protein-like  
Gorai.004G027100.1|PACid:26774759   6.54e-49   23-154   Photosystem II antenna protein-like  
Gorai.005G110500.1|PACid:26803075   4.97e-167   2-442   Photosystem II antenna protein-like  
Gorai.006G014600.1|PACid:26831538   1.03e-28   2-80   Photosystem II antenna protein-like  
Gorai.007G251900.1|PACid:26778672   4.71e-101   7-257   Photosystem II antenna protein-like  
Gorai.007G282700.1|PACid:26780123   6.8e-64   3-185   Photosystem II antenna protein-like  
Gorai.007G283100.1|PACid:26782058   2.35e-63   3-185   Photosystem II antenna protein-like  
Gorai.008G081300.1|PACid:26815502   3.4e-51   46-169   Photosystem II antenna protein-like  
Gorai.009G253800.1|PACid:26767641   1.2e-50   11-145   Photosystem II antenna protein-like  
Gorai.010G129900.1|PACid:26759710   7.72e-106   3-303   Photosystem II antenna protein-like  
Gorai.010G169000.1|PACid:26759621   2.35e-22   2-71   Photosystem II antenna protein-like  
Gorai.011G213400.1|PACid:26806732   2.22e-78   4-197   Photosystem II antenna protein-like  
Gorai.012G044000.1|PACid:26825656   1.7e-25   2-141   Photosystem II antenna protein-like  
 
Weak hits:
Gorai.011G274600.1|PACid:26811026   0.0314   148-238   Photosystem II antenna protein-like  
Gorai.011G274600.3|PACid:26811028   0.0222   148-238   Photosystem II antenna protein-like  

Citrus clementina v165 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
clementine0.9_025245m|PACid:19268157   1.1e-47   1-131   Photosystem II antenna protein-like  
clementine0.9_027766m|PACid:19268548   9.81e-31   14-110   Photosystem II antenna protein-like  
clementine0.9_027778m|PACid:19286223   9.42e-18   1-75   Photosystem II antenna protein-like  
clementine0.9_028266m|PACid:19268457   1.22e-24   14-120   Photosystem II antenna protein-like  

Citrus sinensis v154 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
orange1.1g037213m|PACid:18126129   0.00000000981   3-65   Photosystem II antenna protein-like  
 
Weak hits:
orange1.1g046348m|PACid:18111748   0.0418   55-134   Photosystem II antenna protein-like  

Thellungiella halophila v173 has 3 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Thhalv10011056m|PACid:20207264   5.36e-128   1-318   Photosystem II antenna protein-like  
Thhalv10023930m|PACid:20201580   2.49e-73   75-266   Photosystem II antenna protein-like  
  0.000000314   28-58   Photosystem II antenna protein-like  

Brassica rapa Chiifu-401 1.2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Bra040977   7.98e-215   2-466   Photosystem II antenna protein-like  
Bra041123   6.15e-27   1-77   Photosystem II antenna protein-like  
 
Weak hits:
Bra006133   0.0575   124-156   Photosystem II antenna protein-like  

Capsella rubella v183 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Carubv10011746m|PACid:20889601   2.22e-75   5-172   Photosystem II antenna protein-like  

Arabidopsis lyrata has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Araly1|315545|fgenesh1_pm.C_scaffold_2000578   3.27e-202   28-472   Photosystem II antenna protein-like  
jgi|Araly1|338690|fgenesh1_pg.C_scaffold_2000789   2.22e-224   2-488   Photosystem II antenna protein-like  
jgi|Araly1|475572|fgenesh2_kg.2__702__ATCG00280.1   3.27e-202   28-472   Photosystem II antenna protein-like  
jgi|Araly1|876352|Al_scaffold_0002_946   5.62e-228   2-488   Photosystem II antenna protein-like  
jgi|Araly1|894440|scaffold_201514.1   3.01e-162   28-410   Photosystem II antenna protein-like  
jgi|Araly1|899419|scaffold_303389.1   6.15e-92   35-235   Photosystem II antenna protein-like  
jgi|Araly1|915394|scaffold_703136.1   0.00000000000405   1-46   Photosystem II antenna protein-like  

Arabidopsis thaliana 10 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ATCG00280.1   3.27e-202   28-472   Photosystem II antenna protein-like  
ATCG00680.1   4.19e-228   2-488   Photosystem II antenna protein-like  

Carica papaya has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
evm.TU.contig_31780.1   2.22e-31   1-174   Photosystem II antenna protein-like  
evm.TU.supercontig_101.26   9.29e-25   1-74   Photosystem II antenna protein-like  
evm.TU.supercontig_185.15   1.44e-119   2-306   Photosystem II antenna protein-like  
evm.TU.supercontig_28.100   7.72e-21   28-99   Photosystem II antenna protein-like  
evm.TU.supercontig_66.98   1.31e-59   90-258   Photosystem II antenna protein-like  
evm.TU.supercontig_846.4   1.83e-23   1-77   Photosystem II antenna protein-like  
 
Weak hits:
evm.TU.supercontig_13.51   0.0471   2-47   Photosystem II antenna protein-like  

Medicago truncatula has 13 significant domains in 13 proteins.

     

Sequence ID   Evalue   Region   Family  
Medtr0002s0420.1   2.22e-201   353-797   Photosystem II antenna protein-like  
Medtr0002s0740.1   1.28e-226   2-488   Photosystem II antenna protein-like  
Medtr1g058960.1   0.00000732   13-41   Photosystem II antenna protein-like  
Medtr3g008370.1   1.96e-19   194-241   Photosystem II antenna protein-like  
Medtr4g022700.1   6.93e-22   50-130   Photosystem II antenna protein-like  
Medtr4g051370.1   5.1e-228   2-488   Photosystem II antenna protein-like  
Medtr4g083450.1   0.000000157   6-65   Photosystem II antenna protein-like  
Medtr5g041300.1   2.12e-32   12-135   Photosystem II antenna protein-like  
Medtr5g041320.1   0.00000018   25-62   Photosystem II antenna protein-like  
Medtr5g092940.1   0.00000000000000392   17-64   Photosystem II antenna protein-like  
Medtr7g016660.1   2.35e-27   3-109   Photosystem II antenna protein-like  
Medtr8g014470.1   4.71e-125   210-480   Photosystem II antenna protein-like  
Medtr8g056790.1   0.00000000000000183   1-63   Photosystem II antenna protein-like  
 
Weak hits:
Medtr1g006690.2   0.017   2-46   Photosystem II antenna protein-like  

Phaseolus vulgaris v186 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Phvulv091017070m|PACid:23532260   6.28e-48   123-235   Photosystem II antenna protein-like  
Phvulv091030379m|PACid:23554937   1.31e-53   12-142   Photosystem II antenna protein-like  

Glycine max v109 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Glyma08g38510.1|PACid:16273168   3.53e-24   20-87   Photosystem II antenna protein-like  
Glyma09g21330.1|PACid:16275959   1.44e-17   2-52   Photosystem II antenna protein-like  
 
Weak hits:
Glyma15g14340.1|PACid:16298757   0.0759   157-253   Photosystem II antenna protein-like  

Cucumis sativus v122 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Cucsa.089860.1|PACid:16957215   1.44e-16   2-68   Photosystem II antenna protein-like  
 
Weak hits:
Cucsa.130040.2|PACid:16962344   0.00288   3-43   Photosystem II antenna protein-like  

Fragaria vesca has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gene02809   2.09e-85   1-211   Photosystem II antenna protein-like  
gene32818   0.0000000000654   1-78   Photosystem II antenna protein-like  
 
Weak hits:
gene05426   0.011   2-84   Photosystem II antenna protein-like  

Malus domestica v196 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
MDP0000354801|PACid:22626841   7.19e-34   2-97   Photosystem II antenna protein-like  
MDP0000551952|PACid:22662694   4.45e-98   2-231   Photosystem II antenna protein-like  
MDP0000898513|PACid:22647070   9.68e-16   3-61   Photosystem II antenna protein-like  

Linum usitatissimum v200 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Lus10001686|PACid:23144372   4.58e-23   2-58   Photosystem II antenna protein-like  
Lus10006593|PACid:23162686   5.75e-71   1-159   Photosystem II antenna protein-like  
Lus10006594|PACid:23162691   6.93e-122   2-298   Photosystem II antenna protein-like  
 
Weak hits:
Lus10006862|PACid:23144410   0.0798   202-278   Photosystem II antenna protein-like  

Manihot esculenta v147 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
cassava4.1_021092m|PACid:17972336   2.62e-70   2-157   Photosystem II antenna protein-like  
cassava4.1_022561m|PACid:17979103   2.43e-24   1-75   Photosystem II antenna protein-like  
cassava4.1_024553m|PACid:17976643   0.000000000706   32-79   Photosystem II antenna protein-like  
cassava4.1_029271m|PACid:17990875   1.57e-28   1-74   Photosystem II antenna protein-like  
cassava4.1_031990m|PACid:17985630   8.63e-22   1-87   Photosystem II antenna protein-like  

Populus trichocarpa v156 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
POPTR_0002s10900.1|PACid:18245314   0.0000000000262   14-61   Photosystem II antenna protein-like  
POPTR_0010s10350.1|PACid:18241631   2.49e-27   8-99   Photosystem II antenna protein-like  
POPTR_0014s08840.1|PACid:18222870   0.00000000241   2-68   Photosystem II antenna protein-like  
POPTR_0014s19200.1|PACid:18224051   1.11e-22   18-77   Photosystem II antenna protein-like  
POPTR_0018s07700.1|PACid:18215543   6.54e-26   1-90   Photosystem II antenna protein-like  
POPTR_0019s04120.1|PACid:18218915   0.0000000000000209   3-78   Photosystem II antenna protein-like  
POPTR_0019s06110.1|PACid:18219946   0.0000000222   1-78   Photosystem II antenna protein-like  
POPTR_0019s07190.1|PACid:18219464   8.5e-24   1-83   Photosystem II antenna protein-like  
 
Weak hits:
POPTR_0009s15400.1|PACid:18228113   0.0785   264-337   Photosystem II antenna protein-like  
POPTR_0009s15430.1|PACid:18227504   0.0811   254-326   Photosystem II antenna protein-like  

Vitis vinifera has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
GSVIVT01003327001   0.00000000000863   5-54   Photosystem II antenna protein-like  
GSVIVT01006503001   5.1e-49   21-186   Photosystem II antenna protein-like  
GSVIVT01006662001   3.92e-73   1-179   Photosystem II antenna protein-like  
GSVIVT01009345001   3.66e-40   14-136   Photosystem II antenna protein-like  
GSVIVT01028641001   0.0000000000000152   1-51   Photosystem II antenna protein-like  

Mimulus guttatus v140 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
mgv11b017436m|PACid:17671503   5.75e-24   2-58   Photosystem II antenna protein-like  
mgv1a015376m|PACid:17676294   2.49e-72   1-159   Photosystem II antenna protein-like  
mgv1a019557m|PACid:17697208   0.0000000968   55-107   Photosystem II antenna protein-like  
mgv1a023465m|PACid:17697277   3.4e-38   1-92   Photosystem II antenna protein-like  
mgv1a025072m|PACid:17687353   1.7e-26   11-104   Photosystem II antenna protein-like  
mgv1a025905m|PACid:17690007   1.18e-19   1-86   Photosystem II antenna protein-like  

Solanum lycopersicum v.2.3 has 15 significant domains in 15 proteins.

     

Sequence ID   Evalue   Region   Family  
Solyc00g230070.1.1   6.15e-29   28-87   Photosystem II antenna protein-like  
Solyc01g007500.2.1   4.71e-229   2-488   Photosystem II antenna protein-like  
Solyc01g011480.1.1   4.45e-17   3-73   Photosystem II antenna protein-like  
Solyc01g044250.1.1   1.2e-23   3-72   Photosystem II antenna protein-like  
Solyc01g056470.1.1   3.66e-28   6-109   Photosystem II antenna protein-like  
Solyc05g041230.1.1   3.79e-29   31-98   Photosystem II antenna protein-like  
Solyc07g009000.1.1   1.7e-24   65-124   Photosystem II antenna protein-like  
Solyc09g016930.1.1   0.00000000445   37-66   Photosystem II antenna protein-like  
Solyc10g017940.1.1   6.15e-61   15-200   Photosystem II antenna protein-like  
Solyc10g018840.1.1   3.01e-19   12-59   Photosystem II antenna protein-like  
Solyc10g047410.1.1   7.06e-48   46-176   Photosystem II antenna protein-like  
Solyc10g061830.1.1   6.41e-22   2-56   Photosystem II antenna protein-like  
Solyc11g045260.1.1   7.06e-37   9-83   Photosystem II antenna protein-like  
Solyc12g027550.1.1   9.02e-22   1-66   Photosystem II antenna protein-like  
Solyc12g038080.1.1   1.57e-20   28-72   Photosystem II antenna protein-like  

  1 2 3   Next Last
Showing genomes 1 to 25 of 66

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Photosystem II antenna protein-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   18705 18705
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 7 6
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   18 18
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Thellungiella halophila v173   3 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 7 7
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 6 6
No Yes Medicago truncatula Barrel medic 13 13
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 3 3
No Yes Linum usitatissimum v200 Flax 3 3
No Yes Manihot esculenta v147 Cassava 5 5
No Yes Populus trichocarpa v156 Black cottonwood 8 8
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 6 6
No Yes Solanum lycopersicum v.2.3 Tomato 15 15
No Yes Solanum tuberosum Potato 5 4
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   10 10
No Yes Triticum aestivum 22 Bread wheat 111 111
No Yes Aegilops tauschii 22   5 5
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 12 12
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 8 8
No Yes Oryza sativa v193 Rice 8 8
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 2
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 9 9
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella vulgaris   2 2
No Yes Bathycoccus prasinos   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   2 2
No Yes Cyanidioschyzon merolae   2 2
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thalassiosira pseudonana CCMP1335   2 2
No Yes Leptolyngbya sp. PCC 7376   6 6
No Yes Pseudanabaena sp. PCC 7367   2 2
No Yes Acaryochloris marina MBIC11017   13 13
No Yes Synechocystis sp. PCC 6803   3 3
No Yes Thermosynechococcus sp. NK55   3 3
No Yes Thermosynechococcus elongatus BP-1   3 3
No Yes Synechococcus sp. PCC 7502   2 2
No Yes Synechococcus sp. PCC 6312   3 3
No Yes Synechococcus sp. CC9311   3 3
No Yes Synechococcus elongatus PCC 7942   3 3
No Yes Prochlorococcus marinus str. MIT 9515   4 4
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Trichodesmium erythraeum IMS101   6 6
No Yes Geitlerinema sp. PCC 7407   2 2
No Yes Cyanothece sp. PCC 8802   2 2
No Yes Gloeocapsa sp. PCC 7428   5 5
No Yes cyanobacterium UCYN-A   1 1
No Yes Halothece sp. PCC 7418   4 4
No Yes Microcystis aeruginosa NIES-843   2 2
No Yes Gloeobacter violaceus PCC 7421   2 2
No Yes Rivularia sp. PCC 7116   5 5
No Yes Calothrix sp. PCC 7507   8 8
No Yes Anabaena variabilis ATCC 29413   2 2
No Yes 'Nostoc azollae' 0708   2 2
No Yes Nostoc sp. PCC 7107   3 3
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   6 6
No Yes Nostoc sp. PCC 7524   7 6
No Yes Anabaena sp. 90   2 2
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Chroococcidiopsis thermalis PCC 7203   7 7
No Yes Chamaesiphon minutus PCC 6605   3 3
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   3 3
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   3 3
No Yes Synechocystis sp. PCC 6803 substr. GT-I   3 3
No Yes Synechocystis sp. PCC 6803   3 3
No Yes Cyanobium gracile PCC 6307   2 2
No Yes Dactylococcopsis salina PCC 8305   4 4
No Yes Synechococcus sp. JA-2-3B'a(2-13)   4 4
No Yes Synechococcus sp. JA-3-3Ab   4 4
No Yes Synechococcus sp. CC9902   3 3
No Yes Synechococcus sp. RCC307   2 2
No Yes Synechococcus sp. CC9605   3 3
No Yes Synechococcus sp. WH 8102   2 2
No Yes Synechococcus sp. WH 7803   2 2
No Yes Synechococcus sp. PCC 7002   3 3
No Yes Synechococcus elongatus PCC 6301   3 3
No Yes Prochlorococcus marinus str. NATL1A   9 9
No Yes Prochlorococcus marinus str. MIT 9301   4 4
No Yes Prochlorococcus marinus str. AS9601   4 4
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   10 10
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   3 3
No Yes Prochlorococcus marinus str. MIT 9215   4 4
No Yes Prochlorococcus marinus str. MIT 9211   9 9
No Yes Prochlorococcus marinus str. MIT 9313   4 4
No Yes Prochlorococcus marinus str. MIT 9312   4 4
No Yes Prochlorococcus marinus str. MIT 9303   4 4
No Yes Prochlorococcus marinus str. NATL2A   9 9
No Yes Crinalium epipsammum PCC 9333   2 2
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Oscillatoria acuminata PCC 6304   3 3
No Yes Arthrospira platensis NIES-39   3 3
No Yes Cyanothece sp. PCC 7822   2 2
No Yes Cyanothece sp. PCC 7425   3 3
No Yes Cyanothece sp. PCC 7424   3 3
No Yes Cyanothece sp. ATCC 51142   3 3
No Yes Cyanothece sp. PCC 8801   2 2
No Yes Cyanobacterium aponinum PCC 10605   3 3
No Yes Cyanobacterium stanieri PCC 7202   3 3
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   2 2
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   8 8
No Yes Stanieria cyanosphaera PCC 7437   3 3
No Yes Calothrix parietina Calothrix sp. PCC 6303   5 5
No Yes Cylindrospermum stagnale PCC 7417   2 2
No Yes Anabaena cylindrica PCC 7122   6 6
No Yes Lotus japonicus (Early assembly)   18 18
No Yes Malus x domestica (Duplicate) Apple 3 3
No Yes Ricinus communis (Early assembly) Castor bean 8 8
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   19 19
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 15 15
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 15 15
No Yes Guillardia theta (nucleomorph)   2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   12 12
No Yes 5_050719P (meta-genome)   9 9
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   17 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   1484 1482
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   9 9
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   7 7
No Yes STRING v9.0.5 (STRING)   219 217
No Yes Uniprot 2018_03 genome   13564 13497
No Yes Global Ocean Sampling Expedition (GOS)   777 777
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   6 4
No Yes Protein Data Bank (all PDB sequenc)   178 174
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   329 327

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]