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PspA lactotransferrin-binding region superfamily domain assignments
in
all bacterial genomes

Assignment details

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25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 76
  1 2 3 4   Next Last

Cyanothece sp. PCC 8802 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|257058071|ref|YP_003135959.1|   0.0000837   29-100   PspA lactotransferrin-binding region  
 
Weak hits:
gi|256818694|ref|YP_003135761.1|   0.000353   12-75   PspA lactotransferrin-binding region  
gi|257058796|ref|YP_003136684.1|   0.000314   34-98   PspA lactotransferrin-binding region  
gi|257059737|ref|YP_003137625.1|   0.00942   10-44   PspA lactotransferrin-binding region  

Eggerthella sp. YY7918 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|339444552|ref|YP_004710556.1|   0.0000183   25-86   PspA lactotransferrin-binding region  

Mycobacterium vanbaalenii PYR-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|120404587|ref|YP_954416.1|   0.000068   7-107   PspA lactotransferrin-binding region  

Clostridium perfringens ATCC 13124 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|110801116|ref|YP_694655.1|   0.000085   26-119   PspA lactotransferrin-binding region  

Lactobacillus johnsonii FI9785 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|268319339|ref|YP_003292995.1|   0.000000641   34-95   PspA lactotransferrin-binding region  
 
Weak hits:
gi|268319477|ref|YP_003293133.1|   0.034   270-320   PspA lactotransferrin-binding region  

Lactobacillus gasseri ATCC 33323 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116629497|ref|YP_814669.1|   0.00000301   37-95   PspA lactotransferrin-binding region  
 
Weak hits:
gi|116629653|ref|YP_814825.1|   0.0248   277-320   PspA lactotransferrin-binding region  
gi|116629828|ref|YP_815000.1|   0.0314   9-71   PspA lactotransferrin-binding region  

Streptococcus pneumoniae P1031 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|225855905|ref|YP_002737416.1|   8.5e-32   189-309   PspA lactotransferrin-binding region  
  0.000497   130-184   PspA lactotransferrin-binding region  
 
Weak hits:
gi|225856531|ref|YP_002738042.1|   0.0562   363-384   PspA lactotransferrin-binding region  
gi|225857018|ref|YP_002738529.1|   0.0405   699-764   PspA lactotransferrin-binding region  

Staphylococcus lugdunensis HKU09-01 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|289550136|ref|YP_003471040.1|   0.0000811   4-52   PspA lactotransferrin-binding region  

Runella slithyformis DSM 19594 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|338210217|ref|YP_004654264.1|   0.000017   130-217   PspA lactotransferrin-binding region  

Bacteroides helcogenes P 36-108 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|319901047|ref|YP_004160775.1|   0.0000235   54-149   PspA lactotransferrin-binding region  

Chlamydophila caviae GPIC has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|29840551|ref|NP_829657.1|   0.0000301   244-322   PspA lactotransferrin-binding region  

Sulfurihydrogenibium sp. YO3AOP1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188996293|ref|YP_001930544.1|   0.000051   35-129   PspA lactotransferrin-binding region  
 
Weak hits:
gi|188996042|ref|YP_001930293.1|   0.00157   380-439   PspA lactotransferrin-binding region  
gi|188997120|ref|YP_001931371.1|   0.00235   380-435   PspA lactotransferrin-binding region  

Desulfovibrio vulgaris subsp. vulgaris DP4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|120601970|ref|YP_966370.1|   0.0000549   37-127   PspA lactotransferrin-binding region  
 
Weak hits:
gi|120586871|ref|YP_961216.1|   0.00641   71-134   PspA lactotransferrin-binding region  
gi|120603175|ref|YP_967575.1|   0.00981   120-182   PspA lactotransferrin-binding region  

Ruegeria pomeroyi DSS-3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|56697337|ref|YP_167704.1|   0.0000418   499-591   PspA lactotransferrin-binding region  
 
Weak hits:
gi|56697086|ref|YP_167449.1|   0.011   48-113   PspA lactotransferrin-binding region  

Methylobacterium sp. 4-46 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|170741264|ref|YP_001769919.1|   0.0000732   77-172   PspA lactotransferrin-binding region  
 
Weak hits:
gi|170740781|ref|YP_001769436.1|   0.000759   12-67   PspA lactotransferrin-binding region  

Methylobacterium nodulans ORS 2060 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|220924409|ref|YP_002499711.1|   0.0000144   77-172   PspA lactotransferrin-binding region  
 
Weak hits:
gi|220915113|ref|YP_002490419.1|   0.00392   48-148   PspA lactotransferrin-binding region  

Parvibaculum lavamentivorans DS-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|154252540|ref|YP_001413364.1|   0.00000458   2-61   PspA lactotransferrin-binding region  
 
Weak hits:
gi|154251919|ref|YP_001412743.1|   0.0288   94-118   PspA lactotransferrin-binding region  

Brucella microti CCM 4915 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|256370121|ref|YP_003107632.1|   0.0000837   85-181   PspA lactotransferrin-binding region  

Brucella pinnipedialis B2/94 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|340791313|ref|YP_004756778.1|   0.0000837   85-181   PspA lactotransferrin-binding region  

Brucella canis ATCC 23365 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|161619642|ref|YP_001593529.1|   0.0000693   85-181   PspA lactotransferrin-binding region  

Brucella suis ATCC 23445 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|163845293|ref|YP_001622948.1|   0.0000837   85-181   PspA lactotransferrin-binding region  

Brucella melitensis ATCC 23457 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|225853169|ref|YP_002733402.1|   0.0000837   85-181   PspA lactotransferrin-binding region  

Brucella abortus S19 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|189024803|ref|YP_001935571.1|   0.0000837   85-181   PspA lactotransferrin-binding region  

Sinorhizobium fredii NGR234 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|227823722|ref|YP_002827695.1|   0.0000589   203-254   PspA lactotransferrin-binding region  
 
Weak hits:
gi|16519709|ref|NP_443829.1|   0.0248   6-54   PspA lactotransferrin-binding region  
gi|227821342|ref|YP_002825312.1|   0.00288   2-49   PspA lactotransferrin-binding region  
gi|227821585|ref|YP_002825555.1|   0.0628   194-265   PspA lactotransferrin-binding region  
gi|227823342|ref|YP_002827314.1|   0.0262   15-46   PspA lactotransferrin-binding region  

Pelagibacterium halotolerans B2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|357385522|ref|YP_004900246.1|   0.0000379   20-57   PspA lactotransferrin-binding region  
 
Weak hits:
gi|357385727|ref|YP_004900451.1|   0.0183   135-177   PspA lactotransferrin-binding region  

  1 2 3 4   Next Last
Showing genomes 1 to 25 of 76

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Select to display   Genome       Domains   Proteins
No Yes ALL   16799 16799
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Adineta vaga   1 1
No Yes Lottia gigantea Owl limpet 3 3
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Podospora anserina   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   2 2
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 4 4
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Malus domestica v196 Apple 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Leishmania mexicana 2.4   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Trichomonas vaginalis   34 28
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Eggerthella sp. YY7918   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus gasseri ATCC 33323   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Chlamydophila caviae GPIC   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Lactobacillus johnsonii N6.2   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Streptococcus pneumoniae A026   3 1
No Yes Streptococcus pneumoniae ST556   3 1
No Yes Streptococcus pneumoniae SPNA45   1 1
No Yes Streptococcus pneumoniae SPN994039   3 1
No Yes Streptococcus pneumoniae SPN994038   3 1
No Yes Streptococcus pneumoniae SPN034183   3 1
No Yes Streptococcus pneumoniae SPN034156   1 1
No Yes Streptococcus pneumoniae INV104   1 1
No Yes Streptococcus pneumoniae INV200   1 1
No Yes Streptococcus pneumoniae OXC141   3 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae AP200   3 1
No Yes Streptococcus pneumoniae TCH8431/19A   3 1
No Yes Streptococcus pneumoniae CGSP14   1 1
No Yes Streptococcus pneumoniae G54   3 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   2 1
No Yes Streptococcus pneumoniae Taiwan19F-14   3 1
No Yes Streptococcus pneumoniae D39   1 1
No Yes Streptococcus pneumoniae 670-6B   2 2
No Yes Streptococcus pneumoniae R6   1 1
No Yes Streptococcus pneumoniae TIGR4   3 1
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Brachyspira pilosicoli WesB   1 1
No Yes Brachyspira pilosicoli B2904   1 1
No Yes Brachyspira pilosicoli P43/6/78   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   3 3
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 2
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   14535 9144
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   70 58
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   81 68
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1680 1371
No Yes Global Ocean Sampling Expedition (GOS)   41 41
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2 2
No Yes TargetDB (Targets)   6 6

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