SUPERFAMILY 1.75 HMM library and genome assignments server

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HR1 repeat superfamily domain assignments
in
Escherichia coli O157:H7 str. TW14359


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View all assignments containing a HR1 repeat domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   17144 17144
No Yes Homo sapiens 76_38 Human 43 27
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 14 8
No Yes Pongo abelii 76_2 Sumatran orangutan 10 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 11 6
No Yes Papio anubis 76 Olive baboon 13 7
No Yes Macaca mulatta 76_1 Rhesus monkey 22 12
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 23 12
No Yes Otolemur garnettii 76_3 Small-eared galago 11 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 3
No Yes Rattus norvegicus 76_5.0 Norway rat 10 5
No Yes Mus musculus 76_38 House mouse 31 15
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 8 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 11 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 12 6
No Yes Cavia porcellus 76_3 Domestic guinea pig 12 6
No Yes Oryctolagus cuniculus 76_2 Rabbit 7 3
No Yes Ochotona princeps 76 American pika 7 4
No Yes Tupaia belangeri 76 Northern tree shrew 3 2
No Yes Sus scrofa 76_10.2 Pig 17 7
No Yes Bos taurus 76_3.1 Cattle 12 6
No Yes Ovis aries 76_3.1 Sheep 11 5
No Yes Vicugna pacos 76_1 Alpaca 4 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 12 6
No Yes Ailuropoda melanoleuca 76_1 Giant panda 15 7
No Yes Canis familiaris 76_3.1 Dog 16 9
No Yes Felis catus 76_6.2 Domestic cat 11 6
No Yes Equus caballus 76_2 Horse 8 4
No Yes Myotis lucifugus 76_2.0 Little brown bat 10 4
No Yes Pteropus vampyrus 76_1 Large flying fox 11 5
No Yes Sorex araneus 76_1 European shrew 3 2
No Yes Erinaceus europaeus 76 Western European hedgehog 5 3
No Yes Procavia capensis 76_1 Cape rock hyrax 10 5
No Yes Loxodonta africana 76_3 African savanna elephant 18 8
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 13 7
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 4 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 7 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 12 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 12 6
No Yes Ornithorhynchus anatinus 76_5 Platypus 13 5
No Yes Saccoglossus kowalevskii v3.0   6 5
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 9 5
No Yes Gallus gallus 76_4 Chicken 8 4
No Yes Anas platyrhynchos 76_1.0 Mallard 4 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 10 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 5
No Yes Anolis carolinensis 76_2.0 Green anole 8 4
No Yes Xenopus laevis African clawed frog 12 8
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 11 5
No Yes Latimeria chalumnae 76_1 Coelacanth 16 8
No Yes Lepisosteus oculatus 76 Spotted gar 13 7
No Yes Gadus morhua 76_1 Atlantic cod 15 7
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 17 8
No Yes Takifugu rubripes 76_4 Torafugu 44 20
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 22 10
No Yes Oryzias latipes 76_1 Japanese medaka 15 7
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 7
No Yes Poecilia formosa 76 Amazon molly 16 7
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 21 10
No Yes Astyanax mexicanus 76 Mexican tetra 16 8
No Yes Danio rerio 76_9 Zebrafish 25 11
No Yes Oikopleura dioica   4 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 7 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 6 5
No Yes Adineta vaga   5 2
No Yes Octopus bimaculoides 280   7 3
No Yes Crassostrea gigas 22 Pacific oyster 4 2
No Yes Lottia gigantea Owl limpet 4 2
No Yes Helobdella robusta   3 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 2
No Yes Heliconius melpomene Postman butterfly 4 2
No Yes Bombyx mori Domestic silkworm 5 3
No Yes Nasonia vitripennis Jewel wasp 4 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 24 10
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 5 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 4 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 5 2
No Yes Atta cephalotes v1.1   5 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 2
No Yes Lucilia cuprina Australian sheep blowfly 5 3
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   5 3
No Yes Drosophila pseudoobscura 2.13   5 3
No Yes Drosophila persimilis 1.3   5 3
No Yes Drosophila suzukii   6 4
No Yes Drosophila yakuba 1.3   5 3
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   5 3
No Yes Drosophila melanogaster 76_5 Fruit fly 46 24
No Yes Drosophila erecta 1.3   5 3
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   5 3
No Yes Megaselia scalaris 22   4 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 3
No Yes Anopheles darlingi 22 American malaria mosquito 3 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 6 3
No Yes Tribolium castaneum 3.0 Red flour beetle 3 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 4 2
No Yes Rhodnius prolixus 22   5 3
No Yes Daphnia pulex Common water flea 3 2
No Yes Strigamia maritima 22   3 2
No Yes Sarcoptes scabiei   3 1
No Yes Tetranychus urticae Two-spotted spider mite 2 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 5 3
No Yes Pristionchus pacificus   2 1
No Yes Meloidogyne incognita Southern root-knot nematode 2 1
No Yes Meloidogyne hapla   2 1
No Yes Onchocerca volvulus 22   3 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 9 5
No Yes Caenorhabditis japonica   2 1
No Yes Caenorhabditis brenneri   2 1
No Yes Caenorhabditis remanei   2 1
No Yes Caenorhabditis elegans 76_235 Roundworm 4 2
No Yes Caenorhabditis briggsae 2   2 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 3 1
No Yes Acropora digitifera v1.0   3 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 4 2
No Yes Hydra vulgaris   3 2
No Yes Amphimedon queenslandica   4 2
No Yes Trichoplax adhaerens   4 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   4 4
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 3
No Yes Mortierella verticillata NRRL 6337   7 6
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   4 4
No Yes Mucor circinelloides   3 3
No Yes Rhizomucor miehei CAU432   3 3
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   2 2
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   2 1
No Yes Wallemia sebi v1.0   2 2
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Piloderma croceum F 1598 v1.0   2 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 2
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   2 2
No Yes Scleroderma citrinum Foug A v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 2
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   2 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 2
No Yes Galerina marginata v1.0   2 2
No Yes Hebeloma cylindrosporum h7 v2.0   2 2
No Yes Laccaria bicolor S238N-H82   2 2
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   3 3
No Yes Punctularia strigosozonata v1.0   2 2
No Yes Sebacina vermifera MAFF 305830 v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   2 2
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   1 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 2
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   2 2
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   2 2
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   2 2
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   2 2
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   2 2
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   2 2
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   2 2
No Yes Pyrenophora tritici-repentis   2 2
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 2
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   2 2
No Yes Coccidioides immitis RS   4 4
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   2 2
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   2 2
No Yes Trichophyton verrucosum HKI 0517   2 2
No Yes Arthroderma benhamiae CBS 112371   2 2
No Yes Trichophyton tonsurans CBS 112818   2 2
No Yes Trichophyton rubrum CBS 118892   2 2
No Yes Uncinocarpus reesii 1704   2 2
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   2 2
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   2 2
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   2 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   2 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   1 1
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   2 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   2 2
No Yes Candida lusitaniae ATCC 42720   2 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Kluyveromyces thermotolerans CBS 6340   1 1
No Yes Lachancea kluyveri   2 2
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces octosporus yFS286   2 2
No Yes Schizosaccharomyces japonicus yFS275   3 3
No Yes Schizosaccharomyces pombe Fission yeast 3 3
No Yes Catenaria anguillulae PL171 v1.0   2 2
No Yes Allomyces macrogynus ATCC 38327   5 4
No Yes Spizellomyces punctatus DAOM BR117   7 5
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 14 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 31 13
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 7 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 2
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   2 2
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   2 2
No Yes Paracoccidioides brasiliensis Pb03   2 2
No Yes Coccidioides posadasii str. Silveira   2 2
No Yes Coccidioides immitis RMSCC 3703   2 2
No Yes Coccidioides immitis RMSCC 2394   2 2
No Yes Ajellomyces dermatitidis ER-3   2 2
No Yes Histoplasma capsulatum H143   2 2
No Yes Histoplasma capsulatum H88   2 2
No Yes Histoplasma capsulatum G186AR   2 2
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Schizosaccharomyces pombe 972h-   3 3
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 42 26
No Yes Homo sapiens (NCBI version) Human 18 10
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 11 5
No Yes Loa loa v3.3 (Request) Eye worm 3 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 2
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Homo sapiens 69_37 Human 13 7
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 11 5
No Yes Pongo abelii 69_2 Sumatran orangutan 10 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 11 6
No Yes Macaca mulatta 69_1 Rhesus monkey 12 6
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 15 7
No Yes Otolemur garnettii 69_3 Small-eared galago 11 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 3
No Yes Rattus norvegicus 69_3.4 Norway rat 10 5
No Yes Mus musculus 69_38 House mouse 11 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 8 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 11 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 12 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 8 4
No Yes Ochotona princeps 69 American pika 7 4
No Yes Tupaia belangeri 69 Northern tree shrew 3 2
No Yes Sus scrofa 69_10.2 Pig 11 5
No Yes Bos taurus 69_3.1 Cattle 12 6
No Yes Vicugna pacos 69_1 Alpaca 4 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 12 6
No Yes Ailuropoda melanoleuca 69_1 Giant panda 15 7
No Yes Canis familiaris 69_3.1 Dog 11 6
No Yes Felis catus 69 Domestic cat 9 5
No Yes Equus caballus 69_2 Horse 8 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 10 4
No Yes Pteropus vampyrus 69_1 Large flying fox 11 5
No Yes Sorex araneus 69_1 European shrew 3 2
No Yes Erinaceus europaeus 69 Western European hedgehog 5 3
No Yes Procavia capensis 69_1 Cape rock hyrax 10 5
No Yes Loxodonta africana 69_3 African savanna elephant 12 6
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 4 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 7 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 11 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 12 6
No Yes Ornithorhynchus anatinus 69_5 Platypus 10 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 7 4
No Yes Gallus gallus 69_2 Chicken 7 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 10 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 9 5
No Yes Anolis carolinensis 69_2.0 Green anole 8 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 11 5
No Yes Latimeria chalumnae 69_1 Coelacanth 11 6
No Yes Gadus morhua 69_1 Atlantic cod 15 7
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 14 7
No Yes Takifugu rubripes 69_4 Torafugu 16 8
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 16 8
No Yes Oryzias latipes 69_1 Japanese medaka 15 7
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 7
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 16 8
No Yes Danio rerio 69_9 Zebrafish 18 8
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 4 2
No Yes Drosophila melanogaster 69_5 Fruit fly 5 3
No Yes Caenorhabditis elegans 69_215 Roundworm 2 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes NCBI 2017_08 genome   7775 4043
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   434 251
No Yes Uniprot 2018_03 genome   5433 3481
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   15 15
No Yes TargetDB (Targets)   19 12

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