SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


HR1 repeat superfamily domain assignments
in
Bacillus weihenstephanensis KBAB4


No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a HR1 repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   17144 17144
No Yes Homo sapiens 76_38 Human 43 27
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 14 8
No Yes Pongo abelii 76_2 Sumatran orangutan 10 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 11 6
No Yes Papio anubis 76 Olive baboon 13 7
No Yes Macaca mulatta 76_1 Rhesus monkey 22 12
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 23 12
No Yes Otolemur garnettii 76_3 Small-eared galago 11 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 3
No Yes Rattus norvegicus 76_5.0 Norway rat 10 5
No Yes Mus musculus 76_38 House mouse 31 15
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 8 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 11 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 12 6
No Yes Cavia porcellus 76_3 Domestic guinea pig 12 6
No Yes Oryctolagus cuniculus 76_2 Rabbit 7 3
No Yes Ochotona princeps 76 American pika 7 4
No Yes Tupaia belangeri 76 Northern tree shrew 3 2
No Yes Sus scrofa 76_10.2 Pig 17 7
No Yes Bos taurus 76_3.1 Cattle 12 6
No Yes Ovis aries 76_3.1 Sheep 11 5
No Yes Vicugna pacos 76_1 Alpaca 4 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 12 6
No Yes Ailuropoda melanoleuca 76_1 Giant panda 15 7
No Yes Canis familiaris 76_3.1 Dog 16 9
No Yes Felis catus 76_6.2 Domestic cat 11 6
No Yes Equus caballus 76_2 Horse 8 4
No Yes Myotis lucifugus 76_2.0 Little brown bat 10 4
No Yes Pteropus vampyrus 76_1 Large flying fox 11 5
No Yes Sorex araneus 76_1 European shrew 3 2
No Yes Erinaceus europaeus 76 Western European hedgehog 5 3
No Yes Procavia capensis 76_1 Cape rock hyrax 10 5
No Yes Loxodonta africana 76_3 African savanna elephant 18 8
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 13 7
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 4 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 7 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 12 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 12 6
No Yes Ornithorhynchus anatinus 76_5 Platypus 13 5
No Yes Saccoglossus kowalevskii v3.0   6 5
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 9 5
No Yes Gallus gallus 76_4 Chicken 8 4
No Yes Anas platyrhynchos 76_1.0 Mallard 4 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 10 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 5
No Yes Anolis carolinensis 76_2.0 Green anole 8 4
No Yes Xenopus laevis African clawed frog 12 8
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 11 5
No Yes Latimeria chalumnae 76_1 Coelacanth 16 8
No Yes Lepisosteus oculatus 76 Spotted gar 13 7
No Yes Gadus morhua 76_1 Atlantic cod 15 7
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 17 8
No Yes Takifugu rubripes 76_4 Torafugu 44 20
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 22 10
No Yes Oryzias latipes 76_1 Japanese medaka 15 7
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 7
No Yes Poecilia formosa 76 Amazon molly 16 7
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 21 10
No Yes Astyanax mexicanus 76 Mexican tetra 16 8
No Yes Danio rerio 76_9 Zebrafish 25 11
No Yes Oikopleura dioica   4 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 7 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 6 5
No Yes Adineta vaga   5 2
No Yes Octopus bimaculoides 280   7 3
No Yes Crassostrea gigas 22 Pacific oyster 4 2
No Yes Lottia gigantea Owl limpet 4 2
No Yes Helobdella robusta   3 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 2
No Yes Heliconius melpomene Postman butterfly 4 2
No Yes Bombyx mori Domestic silkworm 5 3
No Yes Nasonia vitripennis Jewel wasp 4 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 24 10
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 5 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 4 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 5 2
No Yes Atta cephalotes v1.1   5 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 2
No Yes Lucilia cuprina Australian sheep blowfly 5 3
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   5 3
No Yes Drosophila pseudoobscura 2.13   5 3
No Yes Drosophila persimilis 1.3   5 3
No Yes Drosophila suzukii   6 4
No Yes Drosophila yakuba 1.3   5 3
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   5 3
No Yes Drosophila melanogaster 76_5 Fruit fly 46 24
No Yes Drosophila erecta 1.3   5 3
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   5 3
No Yes Megaselia scalaris 22   4 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 3
No Yes Anopheles darlingi 22 American malaria mosquito 3 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 6 3
No Yes Tribolium castaneum 3.0 Red flour beetle 3 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 4 2
No Yes Rhodnius prolixus 22   5 3
No Yes Daphnia pulex Common water flea 3 2
No Yes Strigamia maritima 22   3 2
No Yes Sarcoptes scabiei   3 1
No Yes Tetranychus urticae Two-spotted spider mite 2 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 5 3
No Yes Pristionchus pacificus   2 1
No Yes Meloidogyne incognita Southern root-knot nematode 2 1
No Yes Meloidogyne hapla   2 1
No Yes Onchocerca volvulus 22   3 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 9 5
No Yes Caenorhabditis japonica   2 1
No Yes Caenorhabditis brenneri   2 1
No Yes Caenorhabditis remanei   2 1
No Yes Caenorhabditis elegans 76_235 Roundworm 4 2
No Yes Caenorhabditis briggsae 2   2 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 3 1
No Yes Acropora digitifera v1.0   3 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 4 2
No Yes Hydra vulgaris   3 2
No Yes Amphimedon queenslandica   4 2
No Yes Trichoplax adhaerens   4 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   4 4
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 3
No Yes Mortierella verticillata NRRL 6337   7 6
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   4 4
No Yes Mucor circinelloides   3 3
No Yes Rhizomucor miehei CAU432   3 3
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   2 2
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   2 1
No Yes Wallemia sebi v1.0   2 2
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Piloderma croceum F 1598 v1.0   2 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 2
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   2 2
No Yes Scleroderma citrinum Foug A v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 2
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   2 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 2
No Yes Galerina marginata v1.0   2 2
No Yes Hebeloma cylindrosporum h7 v2.0   2 2
No Yes Laccaria bicolor S238N-H82   2 2
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   3 3
No Yes Punctularia strigosozonata v1.0   2 2
No Yes Sebacina vermifera MAFF 305830 v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   2 2
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   1 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 2
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   2 2
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   2 2
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   2 2
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   2 2
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   2 2
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   2 2
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   2 2
No Yes Pyrenophora tritici-repentis   2 2
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 2
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   2 2
No Yes Coccidioides immitis RS   4 4
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   2 2
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   2 2
No Yes Trichophyton verrucosum HKI 0517   2 2
No Yes Arthroderma benhamiae CBS 112371   2 2
No Yes Trichophyton tonsurans CBS 112818   2 2
No Yes Trichophyton rubrum CBS 118892   2 2
No Yes Uncinocarpus reesii 1704   2 2
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   2 2
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   2 2
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   2 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   2 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   1 1
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   2 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   2 2
No Yes Candida lusitaniae ATCC 42720   2 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Kluyveromyces thermotolerans CBS 6340   1 1
No Yes Lachancea kluyveri   2 2
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces octosporus yFS286   2 2
No Yes Schizosaccharomyces japonicus yFS275   3 3
No Yes Schizosaccharomyces pombe Fission yeast 3 3
No Yes Catenaria anguillulae PL171 v1.0   2 2
No Yes Allomyces macrogynus ATCC 38327   5 4
No Yes Spizellomyces punctatus DAOM BR117   7 5
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 14 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 31 13
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 7 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 2
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   2 2
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   2 2
No Yes Paracoccidioides brasiliensis Pb03   2 2
No Yes Coccidioides posadasii str. Silveira   2 2
No Yes Coccidioides immitis RMSCC 3703   2 2
No Yes Coccidioides immitis RMSCC 2394   2 2
No Yes Ajellomyces dermatitidis ER-3   2 2
No Yes Histoplasma capsulatum H143   2 2
No Yes Histoplasma capsulatum H88   2 2
No Yes Histoplasma capsulatum G186AR   2 2
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Schizosaccharomyces pombe 972h-   3 3
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 42 26
No Yes Homo sapiens (NCBI version) Human 18 10
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 11 5
No Yes Loa loa v3.3 (Request) Eye worm 3 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 2
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Homo sapiens 69_37 Human 13 7
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 11 5
No Yes Pongo abelii 69_2 Sumatran orangutan 10 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 11 6
No Yes Macaca mulatta 69_1 Rhesus monkey 12 6
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 15 7
No Yes Otolemur garnettii 69_3 Small-eared galago 11 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 3
No Yes Rattus norvegicus 69_3.4 Norway rat 10 5
No Yes Mus musculus 69_38 House mouse 11 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 8 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 11 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 12 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 8 4
No Yes Ochotona princeps 69 American pika 7 4
No Yes Tupaia belangeri 69 Northern tree shrew 3 2
No Yes Sus scrofa 69_10.2 Pig 11 5
No Yes Bos taurus 69_3.1 Cattle 12 6
No Yes Vicugna pacos 69_1 Alpaca 4 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 12 6
No Yes Ailuropoda melanoleuca 69_1 Giant panda 15 7
No Yes Canis familiaris 69_3.1 Dog 11 6
No Yes Felis catus 69 Domestic cat 9 5
No Yes Equus caballus 69_2 Horse 8 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 10 4
No Yes Pteropus vampyrus 69_1 Large flying fox 11 5
No Yes Sorex araneus 69_1 European shrew 3 2
No Yes Erinaceus europaeus 69 Western European hedgehog 5 3
No Yes Procavia capensis 69_1 Cape rock hyrax 10 5
No Yes Loxodonta africana 69_3 African savanna elephant 12 6
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 4 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 7 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 11 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 12 6
No Yes Ornithorhynchus anatinus 69_5 Platypus 10 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 7 4
No Yes Gallus gallus 69_2 Chicken 7 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 10 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 9 5
No Yes Anolis carolinensis 69_2.0 Green anole 8 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 11 5
No Yes Latimeria chalumnae 69_1 Coelacanth 11 6
No Yes Gadus morhua 69_1 Atlantic cod 15 7
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 14 7
No Yes Takifugu rubripes 69_4 Torafugu 16 8
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 16 8
No Yes Oryzias latipes 69_1 Japanese medaka 15 7
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 7
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 16 8
No Yes Danio rerio 69_9 Zebrafish 18 8
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 4 2
No Yes Drosophila melanogaster 69_5 Fruit fly 5 3
No Yes Caenorhabditis elegans 69_215 Roundworm 2 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes NCBI 2017_08 genome   7775 4043
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   434 251
No Yes Uniprot 2018_03 genome   5433 3481
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   15 15
No Yes TargetDB (Targets)   19 12

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]