SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Second domain of FERM superfamily domain assignments


No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a Second domain of FERM domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   83567 83567
No Yes Homo sapiens 76_38 Human 207 191
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 51 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 76 71
No Yes Pongo abelii 76_2 Sumatran orangutan 49 47
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 57 54
No Yes Papio anubis 76 Olive baboon 69 66
No Yes Macaca mulatta 76_1 Rhesus monkey 108 101
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 130 122
No Yes Otolemur garnettii 76_3 Small-eared galago 54 50
No Yes Microcebus murinus 76_1 Gray mouse lemur 45 44
No Yes Rattus norvegicus 76_5.0 Norway rat 66 63
No Yes Mus musculus 76_38 House mouse 127 121
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 43 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 51 47
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 53 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 49 44
No Yes Oryctolagus cuniculus 76_2 Rabbit 58 54
No Yes Ochotona princeps 76 American pika 44 41
No Yes Tupaia belangeri 76 Northern tree shrew 42 41
No Yes Sus scrofa 76_10.2 Pig 58 55
No Yes Bos taurus 76_3.1 Cattle 59 56
No Yes Ovis aries 76_3.1 Sheep 62 58
No Yes Vicugna pacos 76_1 Alpaca 30 30
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 51 47
No Yes Mustela putorius furo 76_1.0 Domestic ferret 51 48
No Yes Ailuropoda melanoleuca 76_1 Giant panda 60 55
No Yes Canis familiaris 76_3.1 Dog 70 65
No Yes Felis catus 76_6.2 Domestic cat 55 51
No Yes Equus caballus 76_2 Horse 84 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 54 50
No Yes Pteropus vampyrus 76_1 Large flying fox 50 46
No Yes Sorex araneus 76_1 European shrew 31 31
No Yes Erinaceus europaeus 76 Western European hedgehog 41 38
No Yes Procavia capensis 76_1 Cape rock hyrax 43 42
No Yes Loxodonta africana 76_3 African savanna elephant 79 77
No Yes Echinops telfairi 76 Small Madagascar hedgehog 39 38
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 67 66
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 30 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 43 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 64 62
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 57 55
No Yes Ornithorhynchus anatinus 76_5 Platypus 55 53
No Yes Saccoglossus kowalevskii v3.0   72 71
No Yes Petromyzon marinus 76_7.0 Sea lamprey 32 31
No Yes Meleagris gallopavo 76_2 Turkey 55 53
No Yes Gallus gallus 76_4 Chicken 55 52
No Yes Anas platyrhynchos 76_1.0 Mallard 50 47
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 53 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 52 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 67 62
No Yes Anolis carolinensis 76_2.0 Green anole 56 51
No Yes Xenopus laevis African clawed frog 62 60
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 66 63
No Yes Latimeria chalumnae 76_1 Coelacanth 51 48
No Yes Lepisosteus oculatus 76 Spotted gar 78 74
No Yes Gadus morhua 76_1 Atlantic cod 68 65
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 99 92
No Yes Takifugu rubripes 76_4 Torafugu 256 237
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 86 79
No Yes Oryzias latipes 76_1 Japanese medaka 92 85
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 74 69
No Yes Poecilia formosa 76 Amazon molly 76 72
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 100 93
No Yes Astyanax mexicanus 76 Mexican tetra 70 68
No Yes Danio rerio 76_9 Zebrafish 134 126
No Yes Oikopleura dioica   15 14
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 67 57
No Yes Ciona intestinalis 76 Vase tunicate 22 21
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 31 31
No Yes Adineta vaga   53 48
No Yes Octopus bimaculoides 280   46 41
No Yes Crassostrea gigas 22 Pacific oyster 27 24
No Yes Lottia gigantea Owl limpet 25 22
No Yes Helobdella robusta   36 34
No Yes Capitella sp. I   28 26
No Yes Danaus plexippus OGS1.0 Monarch butterfly 27 24
No Yes Heliconius melpomene Postman butterfly 21 19
No Yes Bombyx mori Domestic silkworm 22 22
No Yes Nasonia vitripennis Jewel wasp 15 12
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 41 38
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 22 20
No Yes Linepithema humile v1.1 Argentine ant 20 18
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 24 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 18
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 21 19
No Yes Atta cephalotes v1.1   22 21
No Yes Camponotus floridanus v3.3 Florida carpenter ant 20 18
No Yes Lucilia cuprina Australian sheep blowfly 24 22
No Yes Drosophila grimshawi 1.3   25 22
No Yes Drosophila willistoni 1.3   24 22
No Yes Drosophila pseudoobscura 2.13   25 22
No Yes Drosophila persimilis 1.3   21 19
No Yes Drosophila suzukii   28 25
No Yes Drosophila yakuba 1.3   23 20
No Yes Drosophila simulans 1.3   20 18
No Yes Drosophila sechellia 1.3   24 21
No Yes Drosophila melanogaster 76_5 Fruit fly 86 79
No Yes Drosophila erecta 1.3   24 21
No Yes Drosophila ananassae 1.3   23 21
No Yes Drosophila virilis 1.2   24 21
No Yes Drosophila mojavensis 1.3   25 22
No Yes Megaselia scalaris 22   12 11
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 25 23
No Yes Culex pipiens quinquefasciatus Southern house mosquito 25 22
No Yes Anopheles darlingi 22 American malaria mosquito 24 21
No Yes Anopheles gambiae 49_3j African malaria mosquito 17 17
No Yes Tribolium castaneum 3.0 Red flour beetle 26 23
No Yes Pediculus humanus corporis (Early assembly) Human body louse 21 19
No Yes Acyrthosiphon pisum Pea aphid 20 18
No Yes Rhodnius prolixus 22   23 22
No Yes Daphnia pulex Common water flea 25 23
No Yes Strigamia maritima 22   21 19
No Yes Sarcoptes scabiei   21 19
No Yes Tetranychus urticae Two-spotted spider mite 18 16
No Yes Ixodes scapularis (Preliminary) Black-legged tick 14 13
No Yes Pristionchus pacificus   16 15
No Yes Meloidogyne incognita Southern root-knot nematode 17 17
No Yes Meloidogyne hapla   10 10
No Yes Onchocerca volvulus 22   20 19
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 31 30
No Yes Caenorhabditis japonica   28 27
No Yes Caenorhabditis brenneri   23 22
No Yes Caenorhabditis remanei   22 21
No Yes Caenorhabditis elegans 76_235 Roundworm 55 54
No Yes Caenorhabditis briggsae 2   19 18
No Yes Trichinella spiralis 22   29 27
No Yes Hymenolepis microstoma   23 23
No Yes Echinococcus multilocularis   25 25
No Yes Echinococcus granulosus   26 26
No Yes Taenia solium Pork tapeworm 25 25
No Yes Schistosoma mansoni   23 23
No Yes Mnemiopsis leidyi Sea walnut 15 15
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   26 25
No Yes Nematostella vectensis 1.0 Starlet sea anemone 30 28
No Yes Hydra vulgaris   22 21
No Yes Amphimedon queenslandica   32 30
No Yes Trichoplax adhaerens   20 18
No Yes Proterospongia sp. ATCC 50818   21 19
No Yes Monosiga brevicollis   16 14
No Yes Sphaeroforma arctica JP610   2 2
No Yes Capsaspora owczarzaki ATCC 30864   19 17
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   4 3
No Yes Dictyostelium discoideum   10 7
No Yes Dictyostelium purpureum   9 7
No Yes Entamoeba dispar 1.2   3 3
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   3 3
No Yes Selaginella moellendorffii   4 4
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   7 7
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 3 3
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 4 4
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 2 2
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 4 4
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 2 2
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   4 4
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   30 27
No Yes Bigelowiella natans CCMP2755 22   3 3
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 2 2
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   2 2
No Yes Paramecium tetraurelia   3 3
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Naegleria gruberi   3 3
No Yes Trichomonas vaginalis   28 15
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 82 79
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 66 59
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 25
No Yes Ascaris suum Victoria/Ghent Pig roundworm 20 19
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 39 38
No Yes Batrachochytrium dendrobatidis JEL423   2 2
No Yes Batrachochytrium dendrobatidis JAM81   2 2
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 227 206
No Yes Homo sapiens (NCBI version) Human 101 93
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 49 46
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 20 19
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 19 19
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 17 17
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 56 51
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 50 46
No Yes Gorilla gorilla 69_3.1 Western gorilla 53 50
No Yes Pongo abelii 69_2 Sumatran orangutan 49 47
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 52 49
No Yes Macaca mulatta 69_1 Rhesus monkey 52 49
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 55 51
No Yes Otolemur garnettii 69_3 Small-eared galago 52 49
No Yes Microcebus murinus 69_1 Gray mouse lemur 45 44
No Yes Rattus norvegicus 69_3.4 Norway rat 54 51
No Yes Mus musculus 69_38 House mouse 49 46
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 43 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 38
No Yes Cavia porcellus 69_3 Domestic guinea pig 49 44
No Yes Oryctolagus cuniculus 69_2 Rabbit 51 48
No Yes Ochotona princeps 69 American pika 44 41
No Yes Tupaia belangeri 69 Northern tree shrew 42 41
No Yes Sus scrofa 69_10.2 Pig 53 50
No Yes Bos taurus 69_3.1 Cattle 53 50
No Yes Vicugna pacos 69_1 Alpaca 30 30
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 51 47
No Yes Mustela putorius furo 69_1.0 Domestic ferret 51 48
No Yes Ailuropoda melanoleuca 69_1 Giant panda 51 47
No Yes Canis familiaris 69_3.1 Dog 53 49
No Yes Felis catus 69 Domestic cat 36 35
No Yes Equus caballus 69_2 Horse 52 48
No Yes Myotis lucifugus 69_2.0 Little brown bat 51 48
No Yes Pteropus vampyrus 69_1 Large flying fox 50 46
No Yes Sorex araneus 69_1 European shrew 31 31
No Yes Erinaceus europaeus 69 Western European hedgehog 41 38
No Yes Procavia capensis 69_1 Cape rock hyrax 43 42
No Yes Loxodonta africana 69_3 African savanna elephant 50 48
No Yes Echinops telfairi 69 Small Madagascar hedgehog 39 38
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 36 35
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 30 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 43 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 49 48
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 52 50
No Yes Ornithorhynchus anatinus 69_5 Platypus 47 46
No Yes Petromyzon marinus 69_7.0 Sea lamprey 29 28
No Yes Meleagris gallopavo 69_2 Turkey 47 45
No Yes Gallus gallus 69_2 Chicken 48 45
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 52 49
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 51 47
No Yes Anolis carolinensis 69_2.0 Green anole 52 48
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 52 49
No Yes Latimeria chalumnae 69_1 Coelacanth 45 42
No Yes Gadus morhua 69_1 Atlantic cod 67 64
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 77 70
No Yes Takifugu rubripes 69_4 Torafugu 75 70
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 70 65
No Yes Oryzias latipes 69_1 Japanese medaka 70 65
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 74 69
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 75 70
No Yes Danio rerio 69_9 Zebrafish 73 69
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 18 17
No Yes Ciona intestinalis 69 Vase tunicate 20 19
No Yes Drosophila melanogaster 69_5 Fruit fly 24 21
No Yes Caenorhabditis elegans 69_215 Roundworm 20 19
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   44206 41973
No Yes Protozoadb 2010_08 (Protozoadb)   72 46
No Yes STRING v9.0.5 (STRING)   2017 1872
No Yes Uniprot 2018_03 genome   21193 19912
No Yes Global Ocean Sampling Expedition (GOS)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   21 21
No Yes Protein Data Bank (all PDB sequenc)   155 155
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   319 319
No Yes TargetDB (Targets)   77 74

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]