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Second domain of FERM family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 21 significant domains in 21 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1e5wA   3.51e-57   0.00000527   83-201   1ef1 A:88-198  
1ef1A   2.49e-57   0.00000527   80-198   1ef1 A:88-198  
1gc7A   1.32e-58   0.00000494   83-201   1gc7 A:88-198  
1h4rA   1.68e-54   0.00000756   100-218   1h4r A:104-214  
1isnA   1.1e-53   0.00000756   82-200   1h4r A:104-214  
1j19A   1.54e-58   0.00000494   83-201   1gc7 A:88-198  
1mixA   5.35e-48   0.0000022   2-114   1mix A:195-308  
1mizB   8.05e-45   0.00000311   1-109   1mix A:195-308  
1mk7B   6.08e-43   0.00000521   1-100   1mix A:195-308  
1ni2A   2.2e-56   0.00000651   82-200   1ni2 A:88-198  
1sghA   2.56e-57   0.00000527   83-201   1ef1 A:88-198  
1y19B   8.79e-41   0.00000553   1-100   1y19 B:209-308  
2aehA   4.03e-41   0.000000496   102-223   2al6 A:131-253  
2al6A   4.12e-41   0.000000496   102-223   2al6 A:131-253  
2d10A   1.46e-58   0.00000494   85-203   1gc7 A:88-198  
2d2qA   1.46e-58   0.00000494   83-201   1gc7 A:88-198  
2emsA   1.54e-58   0.00000494   85-203   1gc7 A:88-198  
2hrjA   9.52e-49   0.0000022   8-120   1mix A:195-308  
2j0mA   4.03e-41   0.000000496   104-225   2al6 A:131-253  
2zpyA   1.46e-58   0.00000494   85-203   1gc7 A:88-198  
 
Weak hits:
1gg3A   1.83e-71   0.0029   78-187   1gg3 A:82-187  

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Select to display   Genome       Domains   Proteins
No Yes ALL   35683 35683
No Yes Homo sapiens 76_38 Human 83 83
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 15 15
No Yes Gorilla gorilla 76_3.1 Western gorilla 24 24
No Yes Pongo abelii 76_2 Sumatran orangutan 17 17
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 17 17
No Yes Papio anubis 76 Olive baboon 24 24
No Yes Macaca mulatta 76_1 Rhesus monkey 42 42
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 55 55
No Yes Otolemur garnettii 76_3 Small-eared galago 18 18
No Yes Microcebus murinus 76_1 Gray mouse lemur 14 14
No Yes Rattus norvegicus 76_5.0 Norway rat 29 29
No Yes Mus musculus 76_38 House mouse 60 60
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 11 11
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 15 15
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 16 16
No Yes Cavia porcellus 76_3 Domestic guinea pig 16 16
No Yes Oryctolagus cuniculus 76_2 Rabbit 20 20
No Yes Ochotona princeps 76 American pika 12 12
No Yes Tupaia belangeri 76 Northern tree shrew 7 7
No Yes Sus scrofa 76_10.2 Pig 17 17
No Yes Bos taurus 76_3.1 Cattle 19 19
No Yes Ovis aries 76_3.1 Sheep 21 21
No Yes Vicugna pacos 76_1 Alpaca 12 12
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 15
No Yes Mustela putorius furo 76_1.0 Domestic ferret 16 16
No Yes Ailuropoda melanoleuca 76_1 Giant panda 22 22
No Yes Canis familiaris 76_3.1 Dog 27 27
No Yes Felis catus 76_6.2 Domestic cat 20 20
No Yes Equus caballus 76_2 Horse 35 35
No Yes Myotis lucifugus 76_2.0 Little brown bat 21 21
No Yes Pteropus vampyrus 76_1 Large flying fox 15 15
No Yes Sorex araneus 76_1 European shrew 9 9
No Yes Erinaceus europaeus 76 Western European hedgehog 9 9
No Yes Procavia capensis 76_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 76_3 African savanna elephant 33 33
No Yes Echinops telfairi 76 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 28 28
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 11 11
No Yes Macropus eugenii 76_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 26 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 20 20
No Yes Ornithorhynchus anatinus 76_5 Platypus 18 18
No Yes Saccoglossus kowalevskii v3.0   38 38
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 11
No Yes Meleagris gallopavo 76_2 Turkey 21 21
No Yes Gallus gallus 76_4 Chicken 23 23
No Yes Anas platyrhynchos 76_1.0 Mallard 18 18
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 17 17
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 20 20
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 25 25
No Yes Anolis carolinensis 76_2.0 Green anole 17 17
No Yes Xenopus laevis African clawed frog 32 32
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 27 27
No Yes Latimeria chalumnae 76_1 Coelacanth 19 19
No Yes Lepisosteus oculatus 76 Spotted gar 29 29
No Yes Gadus morhua 76_1 Atlantic cod 23 23
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 41 41
No Yes Takifugu rubripes 76_4 Torafugu 122 122
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 29 29
No Yes Oryzias latipes 76_1 Japanese medaka 37 37
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 24 24
No Yes Poecilia formosa 76 Amazon molly 29 29
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 38 38
No Yes Astyanax mexicanus 76 Mexican tetra 27 27
No Yes Danio rerio 76_9 Zebrafish 47 47
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 26 26
No Yes Ciona intestinalis 76 Vase tunicate 7 7
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 8 8
No Yes Adineta vaga   19 19
No Yes Octopus bimaculoides 280   8 8
No Yes Crassostrea gigas 22 Pacific oyster 9 9
No Yes Lottia gigantea Owl limpet 11 11
No Yes Helobdella robusta   14 14
No Yes Capitella sp. I   12 12
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 9
No Yes Heliconius melpomene Postman butterfly 6 6
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 6 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 20 20
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 11
No Yes Linepithema humile v1.1 Argentine ant 7 7
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 7 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 6
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 8
No Yes Atta cephalotes v1.1   9 9
No Yes Camponotus floridanus v3.3 Florida carpenter ant 10 10
No Yes Lucilia cuprina Australian sheep blowfly 8 8
No Yes Drosophila grimshawi 1.3   8 8
No Yes Drosophila willistoni 1.3   8 8
No Yes Drosophila pseudoobscura 2.13   8 8
No Yes Drosophila persimilis 1.3   8 8
No Yes Drosophila suzukii   7 7
No Yes Drosophila yakuba 1.3   7 7
No Yes Drosophila simulans 1.3   6 6
No Yes Drosophila sechellia 1.3   8 8
No Yes Drosophila melanogaster 76_5 Fruit fly 39 39
No Yes Drosophila erecta 1.3   7 7
No Yes Drosophila ananassae 1.3   8 8
No Yes Drosophila virilis 1.2   8 8
No Yes Drosophila mojavensis 1.3   8 8
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 11 11
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 7
No Yes Anopheles darlingi 22 American malaria mosquito 6 6
No Yes Anopheles gambiae 49_3j African malaria mosquito 8 8
No Yes Tribolium castaneum 3.0 Red flour beetle 11 11
No Yes Pediculus humanus corporis (Early assembly) Human body louse 9 9
No Yes Acyrthosiphon pisum Pea aphid 9 9
No Yes Rhodnius prolixus 22   6 6
No Yes Daphnia pulex Common water flea 6 6
No Yes Strigamia maritima 22   9 8
No Yes Sarcoptes scabiei   5 5
No Yes Tetranychus urticae Two-spotted spider mite 6 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 6 6
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 5 5
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   5 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 8 8
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   4 4
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 13 13
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   6 6
No Yes Hymenolepis microstoma   4 4
No Yes Echinococcus multilocularis   5 5
No Yes Echinococcus granulosus   6 6
No Yes Taenia solium Pork tapeworm 6 6
No Yes Schistosoma mansoni   4 4
No Yes Mnemiopsis leidyi Sea walnut 5 5
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 9
No Yes Hydra vulgaris   7 7
No Yes Amphimedon queenslandica   4 4
No Yes Trichoplax adhaerens   4 4
No Yes Proterospongia sp. ATCC 50818   4 4
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   2 2
No Yes Dictyostelium purpureum   3 3
No Yes Thecamonas trahens ATCC 50062   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 36 36
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 29 29
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 12 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 6 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 9 9
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 85 85
No Yes Homo sapiens (NCBI version) Human 43 43
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 19 19
No Yes Loa loa v3.3 (Request) Eye worm 6 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 5 5
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Homo sapiens 69_37 Human 17 17
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 15 15
No Yes Gorilla gorilla 69_3.1 Western gorilla 17 17
No Yes Pongo abelii 69_2 Sumatran orangutan 17 17
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 15 15
No Yes Macaca mulatta 69_1 Rhesus monkey 16 16
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 18 18
No Yes Otolemur garnettii 69_3 Small-eared galago 18 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 14 14
No Yes Rattus norvegicus 69_3.4 Norway rat 18 18
No Yes Mus musculus 69_38 House mouse 19 19
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 11 11
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 12 12
No Yes Cavia porcellus 69_3 Domestic guinea pig 16 16
No Yes Oryctolagus cuniculus 69_2 Rabbit 18 18
No Yes Ochotona princeps 69 American pika 12 12
No Yes Tupaia belangeri 69 Northern tree shrew 7 7
No Yes Sus scrofa 69_10.2 Pig 16 16
No Yes Bos taurus 69_3.1 Cattle 16 16
No Yes Vicugna pacos 69_1 Alpaca 12 12
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 15
No Yes Mustela putorius furo 69_1.0 Domestic ferret 16 16
No Yes Ailuropoda melanoleuca 69_1 Giant panda 17 17
No Yes Canis familiaris 69_3.1 Dog 17 17
No Yes Felis catus 69 Domestic cat 9 9
No Yes Equus caballus 69_2 Horse 18 18
No Yes Myotis lucifugus 69_2.0 Little brown bat 20 20
No Yes Pteropus vampyrus 69_1 Large flying fox 15 15
No Yes Sorex araneus 69_1 European shrew 9 9
No Yes Erinaceus europaeus 69 Western European hedgehog 9 9
No Yes Procavia capensis 69_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 69_3 African savanna elephant 18 18
No Yes Echinops telfairi 69 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 11 11
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 11 11
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 20 20
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 19 19
No Yes Ornithorhynchus anatinus 69_5 Platypus 15 15
No Yes Petromyzon marinus 69_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 69_2 Turkey 17 17
No Yes Gallus gallus 69_2 Chicken 19 19
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 17 17
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 17 17
No Yes Anolis carolinensis 69_2.0 Green anole 17 17
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 19 19
No Yes Latimeria chalumnae 69_1 Coelacanth 15 15
No Yes Gadus morhua 69_1 Atlantic cod 23 23
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 28 28
No Yes Takifugu rubripes 69_4 Torafugu 28 28
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 24 24
No Yes Oryzias latipes 69_1 Japanese medaka 26 26
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 24 24
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 28 28
No Yes Danio rerio 69_9 Zebrafish 24 24
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 6 6
No Yes Ciona intestinalis 69 Vase tunicate 6 6
No Yes Drosophila melanogaster 69_5 Fruit fly 8 8
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes NCBI 2017_08 genome   21449 21448
No Yes STRING v9.0.5 (STRING)   646 646
No Yes Uniprot 2018_03 genome   7897 7894
No Yes PDB chains (SCOP 1.75) (PDB)   21 21
No Yes Protein Data Bank (all PDB sequenc)   96 96
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   268 268
No Yes TargetDB (Targets)   19 19

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