SUPERFAMILY 1.75 HMM library and genome assignments server

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HMG-box superfamily domain assignments
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Candidatus Nitrospira defluvii


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Select to display   Genome       Domains   Proteins
No Yes ALL   130581 130581
No Yes Homo sapiens 76_38 Human 250 192
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 57 48
No Yes Gorilla gorilla 76_3.1 Western gorilla 118 89
No Yes Pongo abelii 76_2 Sumatran orangutan 78 59
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 62 51
No Yes Papio anubis 76 Olive baboon 80 63
No Yes Macaca mulatta 76_1 Rhesus monkey 127 102
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 207 150
No Yes Otolemur garnettii 76_3 Small-eared galago 113 79
No Yes Microcebus murinus 76_1 Gray mouse lemur 57 43
No Yes Rattus norvegicus 76_5.0 Norway rat 171 106
No Yes Mus musculus 76_38 House mouse 209 150
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 47 38
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 64 50
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 79 63
No Yes Cavia porcellus 76_3 Domestic guinea pig 69 54
No Yes Oryctolagus cuniculus 76_2 Rabbit 88 63
No Yes Ochotona princeps 76 American pika 41 34
No Yes Tupaia belangeri 76 Northern tree shrew 65 47
No Yes Sus scrofa 76_10.2 Pig 69 56
No Yes Bos taurus 76_3.1 Cattle 81 63
No Yes Ovis aries 76_3.1 Sheep 82 62
No Yes Vicugna pacos 76_1 Alpaca 30 27
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 52 42
No Yes Mustela putorius furo 76_1.0 Domestic ferret 65 51
No Yes Ailuropoda melanoleuca 76_1 Giant panda 70 58
No Yes Canis familiaris 76_3.1 Dog 80 70
No Yes Felis catus 76_6.2 Domestic cat 64 50
No Yes Equus caballus 76_2 Horse 61 49
No Yes Myotis lucifugus 76_2.0 Little brown bat 59 46
No Yes Pteropus vampyrus 76_1 Large flying fox 55 44
No Yes Sorex araneus 76_1 European shrew 26 24
No Yes Erinaceus europaeus 76 Western European hedgehog 46 34
No Yes Procavia capensis 76_1 Cape rock hyrax 42 34
No Yes Loxodonta africana 76_3 African savanna elephant 87 69
No Yes Echinops telfairi 76 Small Madagascar hedgehog 57 47
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 103 79
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 29 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 48 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 61 51
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 68 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 43 38
No Yes Saccoglossus kowalevskii v3.0   91 70
No Yes Petromyzon marinus 76_7.0 Sea lamprey 38 28
No Yes Meleagris gallopavo 76_2 Turkey 48 38
No Yes Gallus gallus 76_4 Chicken 47 42
No Yes Anas platyrhynchos 76_1.0 Mallard 43 40
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 51 42
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 54 45
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 51 47
No Yes Anolis carolinensis 76_2.0 Green anole 53 43
No Yes Xenopus laevis African clawed frog 267 212
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 70 59
No Yes Latimeria chalumnae 76_1 Coelacanth 78 61
No Yes Lepisosteus oculatus 76 Spotted gar 61 49
No Yes Gadus morhua 76_1 Atlantic cod 70 56
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 97 80
No Yes Takifugu rubripes 76_4 Torafugu 209 171
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 86 65
No Yes Oryzias latipes 76_1 Japanese medaka 90 75
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 78 62
No Yes Poecilia formosa 76 Amazon molly 78 65
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 104 84
No Yes Astyanax mexicanus 76 Mexican tetra 80 66
No Yes Danio rerio 76_9 Zebrafish 147 117
No Yes Oikopleura dioica   22 20
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 26 22
No Yes Ciona intestinalis 76 Vase tunicate 33 24
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 37 30
No Yes Adineta vaga   93 82
No Yes Octopus bimaculoides 280   94 79
No Yes Crassostrea gigas 22 Pacific oyster 36 32
No Yes Lottia gigantea Owl limpet 38 32
No Yes Helobdella robusta   78 68
No Yes Capitella sp. I   39 32
No Yes Danaus plexippus OGS1.0 Monarch butterfly 23 22
No Yes Heliconius melpomene Postman butterfly 27 24
No Yes Bombyx mori Domestic silkworm 27 26
No Yes Nasonia vitripennis Jewel wasp 23 21
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 31 30
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 29 28
No Yes Linepithema humile v1.1 Argentine ant 32 30
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 31 29
No Yes Solenopsis invicta v.2.2.3 Red fire ant 26 24
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 29 28
No Yes Atta cephalotes v1.1   34 32
No Yes Camponotus floridanus v3.3 Florida carpenter ant 29 27
No Yes Lucilia cuprina Australian sheep blowfly 26 22
No Yes Drosophila grimshawi 1.3   29 26
No Yes Drosophila willistoni 1.3   34 32
No Yes Drosophila pseudoobscura 2.13   36 34
No Yes Drosophila persimilis 1.3   33 31
No Yes Drosophila suzukii   38 32
No Yes Drosophila yakuba 1.3   32 28
No Yes Drosophila simulans 1.3   31 29
No Yes Drosophila sechellia 1.3   28 27
No Yes Drosophila melanogaster 76_5 Fruit fly 83 75
No Yes Drosophila erecta 1.3   31 28
No Yes Drosophila ananassae 1.3   34 32
No Yes Drosophila virilis 1.2   32 30
No Yes Drosophila mojavensis 1.3   31 29
No Yes Megaselia scalaris 22   13 12
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 42 36
No Yes Culex pipiens quinquefasciatus Southern house mosquito 38 36
No Yes Anopheles darlingi 22 American malaria mosquito 21 17
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 22
No Yes Tribolium castaneum 3.0 Red flour beetle 44 34
No Yes Pediculus humanus corporis (Early assembly) Human body louse 34 29
No Yes Acyrthosiphon pisum Pea aphid 24 20
No Yes Rhodnius prolixus 22   35 30
No Yes Daphnia pulex Common water flea 57 40
No Yes Strigamia maritima 22   53 36
No Yes Sarcoptes scabiei   26 19
No Yes Tetranychus urticae Two-spotted spider mite 44 37
No Yes Ixodes scapularis (Preliminary) Black-legged tick 28 22
No Yes Pristionchus pacificus   31 27
No Yes Meloidogyne incognita Southern root-knot nematode 31 26
No Yes Meloidogyne hapla   17 15
No Yes Onchocerca volvulus 22   24 21
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 46 43
No Yes Caenorhabditis japonica   18 16
No Yes Caenorhabditis brenneri   41 40
No Yes Caenorhabditis remanei   54 36
No Yes Caenorhabditis elegans 76_235 Roundworm 42 36
No Yes Caenorhabditis briggsae 2   52 41
No Yes Trichinella spiralis 22   26 23
No Yes Hymenolepis microstoma   23 19
No Yes Echinococcus multilocularis   26 22
No Yes Echinococcus granulosus   26 22
No Yes Taenia solium Pork tapeworm 24 20
No Yes Schistosoma mansoni   27 23
No Yes Mnemiopsis leidyi Sea walnut 23 21
No Yes Thelohanellus kitauei   7 6
No Yes Acropora digitifera v1.0   32 28
No Yes Nematostella vectensis 1.0 Starlet sea anemone 38 33
No Yes Hydra vulgaris   33 29
No Yes Amphimedon queenslandica   21 16
No Yes Trichoplax adhaerens   21 18
No Yes Proterospongia sp. ATCC 50818   20 15
No Yes Monosiga brevicollis   17 12
No Yes Sphaeroforma arctica JP610   8 6
No Yes Capsaspora owczarzaki ATCC 30864   13 9
No Yes Conidiobolus coronatus NRRL28638 v1.0   8 7
No Yes Mortierella verticillata NRRL 6337   22 17
No Yes Phycomyces blakesleeanus   27 25
No Yes Rhizopus oryzae RA 99-880   34 30
No Yes Mucor circinelloides   30 26
No Yes Rhizomucor miehei CAU432   19 16
No Yes Malassezia globosa CBS 7966   10 6
No Yes Sporisorium reilianum 22   11 9
No Yes Ustilago maydis   11 9
No Yes Mixia osmundae IAM 14324 v1.0   10 9
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   9 8
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   23 21
No Yes Melampsora laricis-populina   21 20
No Yes Rhodotorula graminis WP1 v1.0   12 11
No Yes Sporobolomyces roseus IAM 13481   9 8
No Yes Microbotryum violaceum 22   13 12
No Yes Wallemia sebi v1.0   8 7
No Yes Sphaerobolus stellatus v1.0   32 30
No Yes Piloderma croceum F 1598 v1.0   19 17
No Yes Serpula lacrymans var. lacrymans S7.9   21 19
No Yes Coniophora puteana   27 24
No Yes Hydnomerulius pinastri v2.0   20 18
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   19 17
No Yes Pisolithus microcarpus 441 v1.0   18 16
No Yes Pisolithus tinctorius Marx 270 v1.0   19 18
No Yes Scleroderma citrinum Foug A v1.0   19 17
No Yes Coprinopsis cinerea okayama7 130 v3   30 28
No Yes Pleurotus ostreatus Oyster mushroom 19 17
No Yes Amanita thiersii Skay4041 v1.0   19 17
No Yes Amanita muscaria Koide v1.0 Fly agaric 26 24
No Yes Galerina marginata v1.0   26 24
No Yes Hebeloma cylindrosporum h7 v2.0   17 15
No Yes Laccaria bicolor S238N-H82   25 21
No Yes Agaricus bisporus var. bisporus   15 14
No Yes Schizophyllum commune   39 37
No Yes Stereum hirsutum FP-91666 SS1 v1.0   29 26
No Yes Heterobasidion annosum   23 21
No Yes Gloeophyllum trabeumv1.0   17 15
No Yes Punctularia strigosozonata v1.0   18 15
No Yes Sebacina vermifera MAFF 305830 v1.0   20 18
No Yes Fomitiporia mediterranea v1.0   44 43
No Yes Tulasnella calospora AL13/4D v1.0   16 14
No Yes Postia placenta   39 35
No Yes Wolfiporia cocos MD-104 SS10 v1.0   18 16
No Yes Fomitopsis pinicolav1.0   19 17
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   21 19
No Yes Phanerochaete chrysosporium RP-78 2.1   25 23
No Yes Dichomitus squalens   21 19
No Yes Trametes versicolor v1.0   32 30
No Yes Tremella mesenterica Witches' butter 7 6
No Yes Daldinia eschscholzii EC12 v1.0   10 9
No Yes Apiospora montagnei NRRL 25634 v1.0   11 11
No Yes Magnaporthe poae ATCC 64411 22   8 7
No Yes Magnaporthe grisea 70-15   13 12
No Yes Podospora anserina   10 10
No Yes Sporotrichum thermophile ATCC 42464   13 12
No Yes Thielavia terrestris NRRL 8126   11 10
No Yes Chaetomium globosum CBS 148.51   12 11
No Yes Neurospora tetrasperma   14 12
No Yes Neurospora discreta FGSC 8579   13 12
No Yes Neurospora crassa OR74A   16 13
No Yes Cryphonectria parasitica Chestnut blight fungus 11 10
No Yes Verticillium albo-atrum VaMs.102   8 7
No Yes Verticillium dahliae VdLs.17   12 11
No Yes Acremonium alcalophilumv 1.0   11 10
No Yes Glomerella graminicola 22   11 10
No Yes Fusarium graminearum   12 11
No Yes Nectria haematococca mpVI   11 11
No Yes Fusarium oxysporum f. sp. lycopersici 4286   14 13
No Yes Fusarium verticillioides 7600   10 9
No Yes Trichoderma asperellum CBS 433.97 v1.0   11 10
No Yes Trichoderma atroviride   11 10
No Yes Trichoderma citrinoviride v1.0   10 9
No Yes Trichoderma reesei 1.2   9 8
No Yes Trichoderma virens Gv29-8   14 12
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   11 10
No Yes Trichoderma harzianum CBS 226.95 v1.0   10 9
No Yes Amorphotheca resinae v1.0 Creosote fungus 11 10
No Yes Botrytis cinerea B05.10   11 10
No Yes Sclerotinia sclerotiorum   9 9
No Yes Blumeria graminis 22   7 7
No Yes Didymella exigua CBS 183.55 v1.0   12 11
No Yes Leptosphaeria maculans 22   12 11
No Yes Setosphaeria turcica v1.0   12 11
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   13 12
No Yes Cochliobolus victoriae FI3 v1.0   14 13
No Yes Cochliobolus carbonum 26-R-13 v1.0   12 11
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 8 8
No Yes Alternaria brassicicola   10 10
No Yes Cochliobolus lunatus m118 v2.0   12 11
No Yes Pyrenophora teres f. teres 22   13 12
No Yes Pyrenophora tritici-repentis   15 14
No Yes Stagonospora nodorum   11 10
No Yes Mycosphaerella graminicola IPO323   9 8
No Yes Zasmidium cellare ATCC 36951 v1.0   11 10
No Yes Dothistroma septosporum   11 10
No Yes Septoria musiva v1.0   8 7
No Yes Mycosphaerella fijiensis CIRAD86   9 8
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   12 11
No Yes Paracoccidioides brasiliensis Pb18   8 7
No Yes Coccidioides posadasii RMSCC 3488   6 5
No Yes Coccidioides immitis RS   8 7
No Yes Ajellomyces dermatitidis SLH14081   9 8
No Yes Histoplasma capsulatum class NAmI strain WU24   8 7
No Yes Microsporum canis CBS 113480   6 6
No Yes Trichophyton equinum CBS 127.97   6 6
No Yes Trichophyton verrucosum HKI 0517   6 6
No Yes Arthroderma benhamiae CBS 112371   7 7
No Yes Trichophyton tonsurans CBS 112818   6 6
No Yes Trichophyton rubrum CBS 118892   6 6
No Yes Uncinocarpus reesii 1704   7 6
No Yes Aspergillus zonatus v1.0   8 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   8 7
No Yes Penicillium chrysogenum v1.0   8 7
No Yes Aspergillus acidus v1.0   18 17
No Yes Aspergillus fumigatus Af293   8 7
No Yes Aspergillus brasiliensis v1.0   8 7
No Yes Aspergillus nidulans FGSC A4   9 8
No Yes Aspergillus sydowii v1.0   8 7
No Yes Aspergillus versicolor v1.0   8 7
No Yes Aspergillus glaucus   8 7
No Yes Aspergillus carbonarius ITEM 5010   7 6
No Yes Neosartorya fischeri NRRL 181   9 8
No Yes Aspergillus terreus NIH2624   7 6
No Yes Aspergillus tubingensis v1.0   6 6
No Yes Aspergillus wentii v1.0   9 8
No Yes Aspergillus oryzae RIB40   5 4
No Yes Aspergillus niger 22   7 6
No Yes Aspergillus niger ATCC 1015   7 6
No Yes Aspergillus flavus NRRL3357   7 6
No Yes Aspergillus clavatus NRRL 1   6 6
No Yes Penicillium marneffei ATCC 18224   9 8
No Yes Tuber melanosporum Mel28 22   11 10
No Yes Tuber melanosporum Vittad Perigord truffle 11 10
No Yes Hansenula polymorpha v2.0   7 6
No Yes Dekkera bruxellensis CBS 2499 v2.0   7 6
No Yes Pichia membranifaciensv1.0   7 6
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   7 6
No Yes Candida dubliniensis CD36   5 5
No Yes Candida tropicalis MYA-3404   5 5
No Yes Candida parapsilosis   5 5
No Yes Candida albicans SC5314   6 6
No Yes Lodderomyces elongisporus NRRL YB-4239   4 4
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   11 8
No Yes Pichia stipitis CBS 6054   6 5
No Yes Candida guilliermondii ATCC 6260   6 5
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   7 6
No Yes Debaromyces hansenii   7 6
No Yes Wickerhamomyces anomalus   6 5
No Yes Pichia pastoris GS115   5 5
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   7 6
No Yes Yarrowia lipolytica CLIB122   8 8
No Yes Candida lusitaniae ATCC 42720   4 4
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   7 7
No Yes Vanderwaltozyma polyspora DSM 70294   10 8
No Yes Candida glabrata CBS138   10 8
No Yes Kluyveromyces thermotolerans CBS 6340   6 5
No Yes Lachancea kluyveri   12 11
No Yes Kluyveromyces waltii   7 6
No Yes Ashbya gossypii ATCC 10895   7 6
No Yes Zygosaccharomyces rouxii   7 6
No Yes Saccharomyces mikatae MIT   9 7
No Yes Saccharomyces paradoxus MIT   9 7
No Yes Saccharomyces cerevisiae 76 Baker's yeast 9 7
No Yes Saccharomyces bayanus MIT   7 5
No Yes Kluyveromyces lactis   8 6
No Yes Schizosaccharomyces cryophilus OY26 22   10 10
No Yes Schizosaccharomyces octosporus yFS286   10 10
No Yes Schizosaccharomyces japonicus yFS275   12 11
No Yes Schizosaccharomyces pombe Fission yeast 12 12
No Yes Catenaria anguillulae PL171 v1.0   13 11
No Yes Allomyces macrogynus ATCC 38327   33 24
No Yes Spizellomyces punctatus DAOM BR117   15 14
No Yes Dictyostelium discoideum   4 4
No Yes Dictyostelium purpureum   6 6
No Yes Entamoeba dispar 1.2   14 14
No Yes Entamoeba invadens 1.2   15 15
No Yes Entamoeba histolytica 1   14 14
No Yes Selaginella moellendorffii   20 16
No Yes Pinus taeda Loblolly pine 34 30
No Yes Picea abies Norway spruce 23 21
No Yes Eucalyptus grandis v201 Rose gum 44 42
No Yes Theobroma cacao B97-61/B2 v1 Cacao 25 23
No Yes Gossypium raimondii v221   99 93
No Yes Citrus clementina v165   39 38
No Yes Citrus sinensis v154 Sweet orange 79 78
No Yes Thellungiella halophila v173   32 28
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 41 37
No Yes Capsella rubella v183   30 26
No Yes Arabidopsis lyrata Lyrate rockcress 26 23
No Yes Arabidopsis thaliana 10 Thale cress 44 38
No Yes Carica papaya Papaya 21 19
No Yes Medicago truncatula Barrel medic 39 36
No Yes Phaseolus vulgaris v186 French bean 27 25
No Yes Glycine max v109 Soybean 81 75
No Yes Cucumis sativus v122 Cucumber 49 45
No Yes Fragaria vesca Wild strawberry 28 26
No Yes Malus domestica v196 Apple 46 43
No Yes Prunus persica v139 Peach 29 27
No Yes Linum usitatissimum v200 Flax 57 45
No Yes Manihot esculenta v147 Cassava 39 37
No Yes Populus trichocarpa v156 Black cottonwood 38 34
No Yes Vitis vinifera Wine grape 23 21
No Yes Mimulus guttatus v140 Spotted monkey flower 28 26
No Yes Solanum lycopersicum v.2.3 Tomato 24 22
No Yes Solanum tuberosum Potato 46 40
No Yes Actinidia chinensis Hongyang   30 29
No Yes Aquilegia coerulea v195   35 33
No Yes Triticum urartu 22   13 13
No Yes Triticum aestivum 22 Bread wheat 49 46
No Yes Aegilops tauschii 22   14 12
No Yes Brachypodium distachyon Stiff brome 26 24
No Yes Oryza barthii 22 African wild rice 21 19
No Yes Oryza meridionalis 22   28 26
No Yes Oryza glumaepatula 22   25 23
No Yes Oryza glaberrima African rice 11 11
No Yes Oryza punctata 22   27 24
No Yes Oryza nivara 22   25 23
No Yes Oryza brachyantha 22 Malo sina 20 18
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 36 34
No Yes Oryza sativa v193 Rice 33 31
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 28 26
No Yes Panicum virgatum v202 Switchgrass 41 37
No Yes Setaria italica v164 Foxtail millet 24 22
No Yes Zea mays subsp. mays Maize 51 49
No Yes Zea mays v181 Maize 57 55
No Yes Sorghum bicolor Sorghum 19 16
No Yes Musa balbisiana Balbis banana 37 33
No Yes Musa acuminata 22 Wild Malaysian banana 48 44
No Yes Amborella trichopoda 22   20 18
No Yes Physcomitrella patens   15 11
No Yes Coccomyxa subellipsoidea sp. C-169 v2   13 9
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 7
No Yes Chlorella variabilis sp. NC64A   8 6
No Yes Chlorella vulgaris   14 10
No Yes Volvox carteri f. nagariensis   13 11
No Yes Volvox carteri v199   13 10
No Yes Chlamydomonas reinhardtii 4.0   15 11
No Yes Ostreococcus sp. RCC809   9 9
No Yes Ostreococcus lucimarinus CCE9901   11 11
No Yes Ostreococcus tauri   12 9
No Yes Bathycoccus prasinos   14 11
No Yes Micromonas sp. RCC299   17 14
No Yes Micromonas pusilla CCMP1545 v3.0   20 15
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   10 7
No Yes Bigelowiella natans CCMP2755 22   46 39
No Yes Giardia lamblia 2.3   3 3
No Yes Cyanophora paradoxa   30 24
No Yes Leishmania mexicana 2.4   8 5
No Yes Leishmania major strain Friedlin   7 5
No Yes Leishmania infantum JPCM5 2.4   7 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   8 6
No Yes Trypanosoma vivax   5 4
No Yes Trypanosoma cruzi strain CL Brener   9 6
No Yes Trypanosoma congolense 2.4   9 7
No Yes Trypanosoma brucei gambiense v4.1   7 6
No Yes Trypanosoma brucei TREU927 v4.1   7 6
No Yes Ectocarpus siliculosus   16 13
No Yes Aureococcus anophagefferens   18 16
No Yes Albugo laibachii 22   11 8
No Yes Pythium iwayamai DAOM BR242034 22   8 7
No Yes Pythium arrhenomanes ATCC 12531 22   10 7
No Yes Pythium ultimum v1.7-2   15 9
No Yes Pythium aphanidermatum DAOM BR444 22   13 7
No Yes Pythium irregulare DAOM BR486 22   16 9
No Yes Pythium vexans DAOM BR484 22   16 10
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 16 9
No Yes Phytophthora sojae 1.1   13 7
No Yes Phytophthora infestans T30-4   14 8
No Yes Phytophthora capsici   20 13
No Yes Hyaloperonospora arabidopsidis 22   10 8
No Yes Phaeodactylum tricornutumCCAP 1055/1   44 36
No Yes Fragilariopsis cylindrus   81 57
No Yes Thalassiosira pseudonana CCMP1335   55 51
No Yes Perkinsus marinus ATCC 50983   11 11
No Yes Paramecium tetraurelia   44 38
No Yes Tetrahymena thermophila SB210 1   19 13
No Yes Ichthyophthirius multifiliis strain G5   5 5
No Yes Cryptosporidium hominis   4 4
No Yes Cryptosporidium muris   4 4
No Yes Cryptosporidium parvum Iowa II   4 4
No Yes Neospora caninum   8 7
No Yes Toxoplasma gondii VEG   8 7
No Yes Toxoplasma gondii ME49   8 7
No Yes Toxoplasma gondii GT1   8 7
No Yes Babesia bovis T2Bo   16 16
No Yes Theileria parva   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   5 4
No Yes Plasmodium vivax SaI-1 7.0   5 4
No Yes Plasmodium knowlesi strain H   5 4
No Yes Plasmodium yoelii ssp. yoelii 1   4 3
No Yes Plasmodium chabaudi   5 4
No Yes Plasmodium berghei ANKA   5 4
No Yes Symbiodinium minutum clade B1 v1.2   61 28
No Yes Naegleria gruberi   26 18
No Yes Trichomonas vaginalis   56 47
No Yes Guillardia theta CCMP2712 v1.0   42 33
No Yes Emiliania huxleyi CCMP1516   41 41
No Yes Halothece sp. PCC 7418   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 167 142
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 64 56
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 23
No Yes Ascaris suum Victoria/Ghent Pig roundworm 27 26
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 31 27
No Yes Cryptococcus neoformans var. grubii H99   11 9
No Yes Cryptococcus neoformans B-3501A   11 9
No Yes Cryptococcus neoformans JEC21   9 8
No Yes Paracoccidioides brasiliensis Pb01   6 6
No Yes Paracoccidioides brasiliensis Pb03   9 8
No Yes Coccidioides posadasii str. Silveira   7 6
No Yes Coccidioides immitis RMSCC 3703   6 5
No Yes Coccidioides immitis RMSCC 2394   7 6
No Yes Coccidioides immitis H538.4   6 5
No Yes Ajellomyces dermatitidis ER-3   9 8
No Yes Histoplasma capsulatum H143   8 7
No Yes Histoplasma capsulatum H88   8 7
No Yes Histoplasma capsulatum G186AR   10 9
No Yes Aspergillus fumigatus A1163   7 6
No Yes Candida albicans WO-1   5 5
No Yes Saccharomyces cerevisiae UC5   9 7
No Yes Saccharomyces cerevisiae PW5   7 6
No Yes Saccharomyces cerevisiae FL100   7 6
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   2 2
No Yes Saccharomyces cerevisiae CBS7960   5 4
No Yes Saccharomyces cerevisiae YJM269   7 6
No Yes Saccharomyces cerevisiae T7   9 7
No Yes Saccharomyces cerevisiae FostersB   8 7
No Yes Saccharomyces cerevisiae FostersO   8 7
No Yes Saccharomyces cerevisiae VL3   8 7
No Yes Saccharomyces cerevisiae Vin13   9 7
No Yes Saccharomyces cerevisiae LalvinQA23   8 6
No Yes Saccharomyces cerevisiae AWRI796   7 6
No Yes Saccharomyces cerevisiae Sigma1278b   7 6
No Yes Saccharomyces cerevisiae W303   9 7
No Yes Saccharomyces cerevisiae JAY291   9 7
No Yes Saccharomyces cerevisiae AWRI1631   8 6
No Yes Saccharomyces cerevisiae YPS163   3 3
No Yes Saccharomyces cerevisiae M22   4 3
No Yes Saccharomyces cerevisiae T73   5 4
No Yes Saccharomyces cerevisiae CLIB215   4 4
No Yes Saccharomyces cerevisiae Y10   3 3
No Yes Saccharomyces cerevisiae YJM789   9 7
No Yes Saccharomyces cerevisiae YJM789   9 7
No Yes Saccharomyces cerevisiae RM11-1a   9 7
No Yes Saccharomyces cerevisiae RM11-1a   7 6
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 9 7
No Yes Schizosaccharomyces pombe 972h-   10 10
No Yes Batrachochytrium dendrobatidis JEL423   10 8
No Yes Batrachochytrium dendrobatidis JAM81   10 9
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 27 24
No Yes Hordeum vulgare 22 Domesticated barley 36 30
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 21 19
No Yes Trypanosoma brucei Lister 427 v4.1   7 6
No Yes Neospora caninum Nc-Liverpool 6.2   8 7
No Yes Plasmodium falciparum HB3   5 4
No Yes Plasmodium falciparum Dd2   3 2
No Yes Bacillus cereus Q1   1 1
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Dickeya dadantii 3937   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 276 213
No Yes Homo sapiens (NCBI version) Human 121 99
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 67 54
No Yes Heliconius numata (Incomplete)   7 7
No Yes Loa loa v3.3 (Request) Eye worm 25 23
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 25 23
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 23 21
No Yes Moniliophthora perniciosa FA553 (Genome survey)   7 6
No Yes Encephalitozoon intestinalis (endoparasite)   3 2
No Yes Encephalitozoon cuniculi (endoparasite)   3 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 4 4
No Yes Lotus japonicus (Early assembly)   17 15
No Yes Malus x domestica (Duplicate) Apple 46 43
No Yes Ricinus communis (Early assembly) Castor bean 22 20
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   40 35
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 24 22
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 24 22
No Yes Phoenix dactylifera (Early draft) Date palm 18 16
No Yes Homo sapiens 69_37 Human 64 54
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 57 48
No Yes Gorilla gorilla 69_3.1 Western gorilla 85 60
No Yes Pongo abelii 69_2 Sumatran orangutan 68 53
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 58 47
No Yes Macaca mulatta 69_1 Rhesus monkey 86 64
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 109 70
No Yes Otolemur garnettii 69_3 Small-eared galago 112 78
No Yes Microcebus murinus 69_1 Gray mouse lemur 57 43
No Yes Rattus norvegicus 69_3.4 Norway rat 217 131
No Yes Mus musculus 69_38 House mouse 67 55
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 47 38
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 60 46
No Yes Cavia porcellus 69_3 Domestic guinea pig 68 53
No Yes Oryctolagus cuniculus 69_2 Rabbit 84 59
No Yes Ochotona princeps 69 American pika 41 34
No Yes Tupaia belangeri 69 Northern tree shrew 65 47
No Yes Sus scrofa 69_10.2 Pig 67 54
No Yes Bos taurus 69_3.1 Cattle 72 55
No Yes Vicugna pacos 69_1 Alpaca 30 27
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 52 42
No Yes Mustela putorius furo 69_1.0 Domestic ferret 65 51
No Yes Ailuropoda melanoleuca 69_1 Giant panda 61 49
No Yes Canis familiaris 69_3.1 Dog 60 51
No Yes Felis catus 69 Domestic cat 39 33
No Yes Equus caballus 69_2 Horse 55 43
No Yes Myotis lucifugus 69_2.0 Little brown bat 58 45
No Yes Pteropus vampyrus 69_1 Large flying fox 55 44
No Yes Sorex araneus 69_1 European shrew 26 24
No Yes Erinaceus europaeus 69 Western European hedgehog 46 34
No Yes Procavia capensis 69_1 Cape rock hyrax 42 34
No Yes Loxodonta africana 69_3 African savanna elephant 59 47
No Yes Echinops telfairi 69 Small Madagascar hedgehog 57 47
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 36 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 29 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 48 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 56 46
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 67 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 43 38
No Yes Petromyzon marinus 69_7.0 Sea lamprey 34 24
No Yes Meleagris gallopavo 69_2 Turkey 41 34
No Yes Gallus gallus 69_2 Chicken 38 34
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 50 41
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 44 40
No Yes Anolis carolinensis 69_2.0 Green anole 52 42
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 54 46
No Yes Latimeria chalumnae 69_1 Coelacanth 62 49
No Yes Gadus morhua 69_1 Atlantic cod 68 54
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 76 64
No Yes Takifugu rubripes 69_4 Torafugu 73 58
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 70 54
No Yes Oryzias latipes 69_1 Japanese medaka 69 59
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 78 62
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 80 64
No Yes Danio rerio 69_9 Zebrafish 83 67
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 19 16
No Yes Ciona intestinalis 69 Vase tunicate 30 22
No Yes Drosophila melanogaster 69_5 Fruit fly 32 30
No Yes Caenorhabditis elegans 69_215 Roundworm 20 18
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 9 7
No Yes Arabidopsis thaliana 10 Thale cress 26 22
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 1
No Yes NCBI 2017_08 genome   52058 43918
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   316 272
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3480 2838
No Yes Uniprot 2018_03 genome   44963 38049
No Yes Global Ocean Sampling Expedition (GOS)   302 261
No Yes NCBI viral sequences (Viral)   31 21
No Yes PDB chains (SCOP 1.75) (PDB)   25 24
No Yes Protein Data Bank (all PDB sequenc)   127 97
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   236 236
No Yes TargetDB (Targets)   106 93
No Yes UniProt viral sequences (Viral)   18 13

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