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Histone-fold superfamily domain assignments
in
Aquilegia coerulea v195

Assignment details

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Aquilegia coerulea v195 has 101 significant domains in 101 proteins.

     

Sequence ID   Evalue   Region   Family  
Aquca_002_00871.1|PACid:22053519   0.0000197   28-91   Archaeal histone  
Aquca_002_01056.1|PACid:22053546   1.46e-32   12-141   TBP-associated factors, TAFs  
Aquca_002_01208.1|PACid:22053090   4.19e-52   35-150   Nucleosome core histones  
Aquca_002_01219.1|PACid:22053060   8.38e-43   12-128   Nucleosome core histones  
Aquca_002_01323.1|PACid:22052777   4.04e-32   3-102   Nucleosome core histones  
Aquca_002_01324.1|PACid:22053098   4.04e-32   3-102   Nucleosome core histones  
Aquca_002_01351.1|PACid:22053079   4.04e-32   3-102   Nucleosome core histones  
Aquca_003_00243.1|PACid:22049712   1.4e-54   2-133   Nucleosome core histones  
Aquca_003_00457.1|PACid:22050307   1.09e-51   1-119   Nucleosome core histones  
Aquca_003_00696.1|PACid:22050263   4.53e-51   2-133   Nucleosome core histones  
Aquca_003_00784.1|PACid:22049939   8.38e-42   11-129   Nucleosome core histones  
Aquca_003_00805.1|PACid:22049575   5.87e-42   39-162   TBP-associated factors, TAFs  
Aquca_004_00081.1|PACid:22030756   4.86e-19   180-251   TBP-associated factors, TAFs  
Aquca_005_00328.1|PACid:22023494   6.06e-35   42-136   TBP-associated factors, TAFs  
Aquca_005_00329.1|PACid:22024132   2.85e-17   41-132   TBP-associated factors, TAFs  
Aquca_005_00415.1|PACid:22023754   1.27e-44   4-123   Nucleosome core histones  
Aquca_005_00416.1|PACid:22024427   2.1e-44   9-125   Nucleosome core histones  
Aquca_006_00069.1|PACid:22036468   8.56e-55   2-133   Nucleosome core histones  
Aquca_007_00370.1|PACid:22048156   5.32e-57   2-133   Nucleosome core histones  
Aquca_007_00370.2|PACid:22048155   5.32e-57   2-133   Nucleosome core histones  
Aquca_007_00521.1|PACid:22048575   1.9e-18   14-78   TBP-associated factors, TAFs  
Aquca_009_00062.1|PACid:22033650   3.32e-19   4-88   TBP-associated factors, TAFs  
Aquca_009_00062.2|PACid:22033651   3.97e-17   1-71   TBP-associated factors, TAFs  
Aquca_009_00205.1|PACid:22034194   2.35e-56   30-161   Nucleosome core histones  
Aquca_009_00211.1|PACid:22034500   1.36e-56   7-138   Nucleosome core histones  
Aquca_009_00562.1|PACid:22033571   1.19e-56   2-133   Nucleosome core histones  
Aquca_009_00880.1|PACid:22033927   2.29e-16   500-564   TBP-associated factors, TAFs  
Aquca_009_00880.2|PACid:22033928   8.58e-19   500-571   TBP-associated factors, TAFs  
Aquca_009_00880.3|PACid:22033929   8.38e-19   499-570   TBP-associated factors, TAFs  
Aquca_009_00880.4|PACid:22033930   8.38e-19   497-568   TBP-associated factors, TAFs  
Aquca_009_00880.5|PACid:22033931   1.88e-16   500-564   TBP-associated factors, TAFs  
Aquca_009_01066.1|PACid:22033665   5.33e-40   107-217   Nucleosome core histones  
Aquca_009_01093.1|PACid:22033688   1.23e-52   28-143   Nucleosome core histones  
Aquca_010_00131.1|PACid:22046980   5.64e-56   157-288   Nucleosome core histones  
Aquca_010_00706.1|PACid:22046339   3.42e-42   14-131   Nucleosome core histones  
Aquca_012_00241.1|PACid:22037587   1.8e-44   10-124   Nucleosome core histones  
Aquca_013_00109.1|PACid:22059834   4.5e-38   10-129   Nucleosome core histones  
Aquca_013_00109.2|PACid:22059835   1.06e-21   10-95   Nucleosome core histones  
Aquca_013_00131.1|PACid:22060009   0.0000000000159   23-86   Nucleosome core histones  
Aquca_013_00172.1|PACid:22059282   0.0000117   39-101   TBP-associated factors, TAFs  
Aquca_013_00352.1|PACid:22059109   2.4e-26   15-96   TBP-associated factors, TAFs  
Aquca_013_00487.1|PACid:22059628   5.29e-23   35-99   Nucleosome core histones  
Aquca_014_00124.1|PACid:22028071   3.39e-52   43-153   Nucleosome core histones  
Aquca_014_00124.2|PACid:22028072   7.72e-37   43-134   Nucleosome core histones  
Aquca_014_00448.1|PACid:22027526   5.03e-17   23-105   TBP-associated factors, TAFs  
Aquca_014_00670.1|PACid:22028419   8.68e-53   29-144   Nucleosome core histones  
Aquca_014_00810.1|PACid:22028700   1.09e-49   762-889   Nucleosome core histones  
Aquca_014_00810.2|PACid:22028701   1.07e-49   758-885   Nucleosome core histones  
Aquca_014_00934.1|PACid:22029025   6.29e-18   7-88   TBP-associated factors, TAFs  
Aquca_017_00120.1|PACid:22032541   0.00000000000103   75-117   TBP-associated factors, TAFs  
Aquca_017_00275.1|PACid:22032109   1.38e-41   36-145   TBP-associated factors, TAFs  
Aquca_017_00339.1|PACid:22032074   5.03e-50   40-154   Nucleosome core histones  
Aquca_017_00339.2|PACid:22032075   1.8e-38   2-127   Nucleosome core histones  
Aquca_017_00341.1|PACid:22032353   1.38e-43   10-128   Nucleosome core histones  
Aquca_017_00420.1|PACid:22031732   3.69e-33   72-180   TBP-associated factors, TAFs  
Aquca_017_00567.1|PACid:22031834   5.07e-41   7-111   Nucleosome core histones  
Aquca_018_00068.1|PACid:22041013   6.13e-52   33-148   Nucleosome core histones  
Aquca_020_00300.1|PACid:22025732   4.04e-32   3-102   Nucleosome core histones  
Aquca_022_00175.1|PACid:22054548   9.19e-53   28-143   Nucleosome core histones  
Aquca_026_00100.1|PACid:22056370   2.84e-43   21-124   Nucleosome core histones  
Aquca_026_00163.1|PACid:22056195   2.42e-33   12-140   TBP-associated factors, TAFs  
Aquca_027_00046.1|PACid:22045699   0.00000000000000516   66-165   TBP-associated factors, TAFs  
Aquca_027_00046.2|PACid:22045700   0.00000259   65-126   Nucleosome core histones  
Aquca_027_00124.1|PACid:22045971   5.43e-41   27-133   TBP-associated factors, TAFs  
Aquca_027_00124.2|PACid:22045972   2.19e-36   27-131   TBP-associated factors, TAFs  
Aquca_027_00124.3|PACid:22045973   3.42e-39   27-121   TBP-associated factors, TAFs  
Aquca_027_00124.4|PACid:22045974   8.69e-39   27-116   TBP-associated factors, TAFs  
Aquca_027_00137.1|PACid:22045956   1.52e-52   36-146   Nucleosome core histones  
Aquca_027_00148.1|PACid:22045842   4.04e-32   3-102   Nucleosome core histones  
Aquca_027_00197.1|PACid:22045550   4.04e-32   3-102   Nucleosome core histones  
Aquca_027_00276.1|PACid:22045825   2.27e-42   26-129   Nucleosome core histones  
Aquca_027_00434.1|PACid:22046010   4.04e-32   3-102   Nucleosome core histones  
Aquca_028_00138.1|PACid:22038790   1.77e-17   4-76   TBP-associated factors, TAFs  
Aquca_028_00138.2|PACid:22038791   1.61e-17   4-76   TBP-associated factors, TAFs  
Aquca_028_00138.3|PACid:22038792   7.26e-18   4-76   TBP-associated factors, TAFs  
Aquca_033_00038.1|PACid:22024533   1.93e-30   160-249   TBP-associated factors, TAFs  
Aquca_033_00038.2|PACid:22024534   1.41e-30   132-221   TBP-associated factors, TAFs  
Aquca_034_00189.1|PACid:22056751   5.32e-57   2-133   Nucleosome core histones  
Aquca_034_00189.2|PACid:22056752   1.71e-38   19-104   Nucleosome core histones  
Aquca_036_00018.1|PACid:22055188   1.19e-56   2-133   Nucleosome core histones  
Aquca_036_00030.1|PACid:22055343   1.19e-56   2-133   Nucleosome core histones  
Aquca_040_00072.1|PACid:22044332   0.000000000218   66-118   Archaeal histone  
Aquca_040_00072.2|PACid:22044331   0.000000000218   66-118   Archaeal histone  
Aquca_040_00072.3|PACid:22044333   0.000000000159   48-100   Archaeal histone  
Aquca_040_00092.1|PACid:22044435   1.84e-33   28-135   TBP-associated factors, TAFs  
Aquca_043_00133.1|PACid:22045140   4.4e-24   2-74   Nucleosome core histones  
Aquca_045_00002.1|PACid:22027027   9.19e-53   35-150   Nucleosome core histones  
Aquca_045_00159.1|PACid:22027281   1.37e-52   38-153   Nucleosome core histones  
Aquca_045_00161.1|PACid:22026926   1.56e-52   38-153   Nucleosome core histones  
Aquca_045_00164.1|PACid:22027270   1.37e-52   38-153   Nucleosome core histones  
Aquca_049_00119.1|PACid:22044707   5.07e-41   7-111   Nucleosome core histones  
Aquca_054_00147.1|PACid:22037156   1.21e-32   80-180   TBP-associated factors, TAFs  
Aquca_054_00147.2|PACid:22037157   1.21e-32   80-180   TBP-associated factors, TAFs  
Aquca_058_00208.1|PACid:22051016   4.49e-38   7-95   Nucleosome core histones  
Aquca_058_00211.1|PACid:22051330   2.4e-43   9-131   Nucleosome core histones  
Aquca_061_00057.1|PACid:22060800   8.07e-52   36-141   Nucleosome core histones  
Aquca_068_00078.1|PACid:22057734   4.04e-32   3-102   Nucleosome core histones  
Aquca_068_00080.1|PACid:22057751   4.04e-32   3-102   Nucleosome core histones  
Aquca_072_00118.1|PACid:22041300   1.68e-23   15-138   TBP-associated factors, TAFs  
Aquca_096_00005.1|PACid:22039812   4.04e-32   3-102   Nucleosome core histones  
Aquca_110_00016.1|PACid:22033478   1.37e-36   53-148   TBP-associated factors, TAFs  
 
Weak hits:
Aquca_013_00068.1|PACid:22060172   0.0138   24-137   TBP-associated factors, TAFs  
Aquca_013_00068.2|PACid:22060173   0.0138   24-137   TBP-associated factors, TAFs  
Aquca_013_00814.2|PACid:22058537   0.0349   54-116   TBP-associated factors, TAFs  
Aquca_030_00376.1|PACid:22035973   0.00532   28-89   Archaeal histone  
Aquca_054_00094.1|PACid:22037147   0.0764   674-716   TBP-associated factors, TAFs  
Aquca_054_00094.2|PACid:22037148   0.0722   674-716   TBP-associated factors, TAFs  
Aquca_054_00094.3|PACid:22037149   0.0638   674-716   TBP-associated factors, TAFs  

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Select to display   Genome       Domains   Proteins
No Yes ALL   206647 206647
No Yes Homo sapiens 76_38 Human 236 232
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 97 96
No Yes Gorilla gorilla 76_3.1 Western gorilla 102 101
No Yes Pongo abelii 76_2 Sumatran orangutan 99 98
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 91 90
No Yes Papio anubis 76 Olive baboon 98 96
No Yes Macaca mulatta 76_1 Rhesus monkey 139 138
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 146 146
No Yes Otolemur garnettii 76_3 Small-eared galago 104 103
No Yes Microcebus murinus 76_1 Gray mouse lemur 84 83
No Yes Rattus norvegicus 76_5.0 Norway rat 106 105
No Yes Mus musculus 76_38 House mouse 180 177
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 83 81
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 87 86
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 127 122
No Yes Cavia porcellus 76_3 Domestic guinea pig 81 80
No Yes Oryctolagus cuniculus 76_2 Rabbit 93 92
No Yes Ochotona princeps 76 American pika 90 89
No Yes Tupaia belangeri 76 Northern tree shrew 51 50
No Yes Sus scrofa 76_10.2 Pig 92 90
No Yes Bos taurus 76_3.1 Cattle 183 181
No Yes Ovis aries 76_3.1 Sheep 112 109
No Yes Vicugna pacos 76_1 Alpaca 60 60
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 93 91
No Yes Mustela putorius furo 76_1.0 Domestic ferret 64 62
No Yes Ailuropoda melanoleuca 76_1 Giant panda 106 105
No Yes Canis familiaris 76_3.1 Dog 110 108
No Yes Felis catus 76_6.2 Domestic cat 99 97
No Yes Equus caballus 76_2 Horse 99 97
No Yes Myotis lucifugus 76_2.0 Little brown bat 97 96
No Yes Pteropus vampyrus 76_1 Large flying fox 78 77
No Yes Sorex araneus 76_1 European shrew 97 96
No Yes Erinaceus europaeus 76 Western European hedgehog 74 73
No Yes Procavia capensis 76_1 Cape rock hyrax 72 72
No Yes Loxodonta africana 76_3 African savanna elephant 117 116
No Yes Echinops telfairi 76 Small Madagascar hedgehog 73 72
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 108 105
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 67 66
No Yes Macropus eugenii 76_1.0 Tammar wallaby 54 54
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 66 66
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 56 55
No Yes Ornithorhynchus anatinus 76_5 Platypus 137 135
No Yes Saccoglossus kowalevskii v3.0   173 161
No Yes Petromyzon marinus 76_7.0 Sea lamprey 56 56
No Yes Meleagris gallopavo 76_2 Turkey 44 44
No Yes Gallus gallus 76_4 Chicken 50 49
No Yes Anas platyrhynchos 76_1.0 Mallard 58 57
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 75 74
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 49 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 76 74
No Yes Anolis carolinensis 76_2.0 Green anole 61 61
No Yes Xenopus laevis African clawed frog 498 496
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 176 173
No Yes Latimeria chalumnae 76_1 Coelacanth 62 59
No Yes Lepisosteus oculatus 76 Spotted gar 51 48
No Yes Gadus morhua 76_1 Atlantic cod 120 116
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 84 81
No Yes Takifugu rubripes 76_4 Torafugu 194 187
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 167 166
No Yes Oryzias latipes 76_1 Japanese medaka 76 76
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 48 46
No Yes Poecilia formosa 76 Amazon molly 70 66
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 71 69
No Yes Astyanax mexicanus 76 Mexican tetra 49 46
No Yes Danio rerio 76_9 Zebrafish 204 199
No Yes Oikopleura dioica   52 51
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 44 39
No Yes Ciona intestinalis 76 Vase tunicate 20 20
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 385 382
No Yes Adineta vaga   92 92
No Yes Octopus bimaculoides 280   101 100
No Yes Crassostrea gigas 22 Pacific oyster 55 55
No Yes Lottia gigantea Owl limpet 120 118
No Yes Helobdella robusta   61 61
No Yes Capitella sp. I   123 110
No Yes Danaus plexippus OGS1.0 Monarch butterfly 28 28
No Yes Heliconius melpomene Postman butterfly 26 24
No Yes Bombyx mori Domestic silkworm 20 20
No Yes Nasonia vitripennis Jewel wasp 91 91
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 49 49
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 33 33
No Yes Linepithema humile v1.1 Argentine ant 37 36
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 37 37
No Yes Solenopsis invicta v.2.2.3 Red fire ant 22 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 36 36
No Yes Atta cephalotes v1.1   39 38
No Yes Camponotus floridanus v3.3 Florida carpenter ant 38 38
No Yes Lucilia cuprina Australian sheep blowfly 30 30
No Yes Drosophila grimshawi 1.3   169 169
No Yes Drosophila willistoni 1.3   58 58
No Yes Drosophila pseudoobscura 2.13   30 30
No Yes Drosophila persimilis 1.3   60 60
No Yes Drosophila suzukii   50 48
No Yes Drosophila yakuba 1.3   33 33
No Yes Drosophila simulans 1.3   88 88
No Yes Drosophila sechellia 1.3   336 335
No Yes Drosophila melanogaster 76_5 Fruit fly 133 133
No Yes Drosophila erecta 1.3   167 167
No Yes Drosophila ananassae 1.3   109 108
No Yes Drosophila virilis 1.2   108 108
No Yes Drosophila mojavensis 1.3   73 73
No Yes Megaselia scalaris 22   30 29
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 86 86
No Yes Culex pipiens quinquefasciatus Southern house mosquito 123 123
No Yes Anopheles darlingi 22 American malaria mosquito 21 21
No Yes Anopheles gambiae 49_3j African malaria mosquito 56 56
No Yes Tribolium castaneum 3.0 Red flour beetle 35 35
No Yes Pediculus humanus corporis (Early assembly) Human body louse 41 41
No Yes Acyrthosiphon pisum Pea aphid 34 34
No Yes Rhodnius prolixus 22   38 38
No Yes Daphnia pulex Common water flea 129 129
No Yes Strigamia maritima 22   54 52
No Yes Sarcoptes scabiei   29 29
No Yes Tetranychus urticae Two-spotted spider mite 38 37
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 25
No Yes Pristionchus pacificus   32 31
No Yes Meloidogyne incognita Southern root-knot nematode 57 57
No Yes Meloidogyne hapla   24 24
No Yes Onchocerca volvulus 22   40 38
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 55 55
No Yes Caenorhabditis japonica   39 39
No Yes Caenorhabditis brenneri   167 167
No Yes Caenorhabditis remanei   89 89
No Yes Caenorhabditis elegans 76_235 Roundworm 100 100
No Yes Caenorhabditis briggsae 2   67 67
No Yes Trichinella spiralis 22   82 82
No Yes Hymenolepis microstoma   32 32
No Yes Echinococcus multilocularis   89 89
No Yes Echinococcus granulosus   34 34
No Yes Taenia solium Pork tapeworm 57 57
No Yes Schistosoma mansoni   45 45
No Yes Mnemiopsis leidyi Sea walnut 20 20
No Yes Thelohanellus kitauei   13 13
No Yes Acropora digitifera v1.0   31 29
No Yes Nematostella vectensis 1.0 Starlet sea anemone 191 181
No Yes Hydra vulgaris   32 32
No Yes Amphimedon queenslandica   41 41
No Yes Trichoplax adhaerens   24 24
No Yes Proterospongia sp. ATCC 50818   26 26
No Yes Monosiga brevicollis   18 18
No Yes Sphaeroforma arctica JP610   33 33
No Yes Capsaspora owczarzaki ATCC 30864   33 33
No Yes Conidiobolus coronatus NRRL28638 v1.0   25 24
No Yes Mortierella verticillata NRRL 6337   33 33
No Yes Phycomyces blakesleeanus   37 36
No Yes Rhizopus oryzae RA 99-880   31 31
No Yes Mucor circinelloides   27 27
No Yes Rhizomucor miehei CAU432   32 31
No Yes Malassezia globosa CBS 7966   32 32
No Yes Sporisorium reilianum 22   22 22
No Yes Ustilago maydis   20 20
No Yes Mixia osmundae IAM 14324 v1.0   26 25
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   29 29
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   38 37
No Yes Melampsora laricis-populina   35 35
No Yes Rhodotorula graminis WP1 v1.0   31 31
No Yes Sporobolomyces roseus IAM 13481   31 31
No Yes Microbotryum violaceum 22   38 38
No Yes Wallemia sebi v1.0   31 31
No Yes Sphaerobolus stellatus v1.0   37 37
No Yes Piloderma croceum F 1598 v1.0   36 36
No Yes Serpula lacrymans var. lacrymans S7.9   30 30
No Yes Coniophora puteana   31 31
No Yes Hydnomerulius pinastri v2.0   36 35
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   33 33
No Yes Pisolithus microcarpus 441 v1.0   32 32
No Yes Pisolithus tinctorius Marx 270 v1.0   29 29
No Yes Scleroderma citrinum Foug A v1.0   40 40
No Yes Coprinopsis cinerea okayama7 130 v3   30 30
No Yes Pleurotus ostreatus Oyster mushroom 33 33
No Yes Amanita thiersii Skay4041 v1.0   29 29
No Yes Amanita muscaria Koide v1.0 Fly agaric 33 33
No Yes Galerina marginata v1.0   29 29
No Yes Hebeloma cylindrosporum h7 v2.0   31 31
No Yes Laccaria bicolor S238N-H82   58 58
No Yes Agaricus bisporus var. bisporus   33 33
No Yes Schizophyllum commune   35 35
No Yes Stereum hirsutum FP-91666 SS1 v1.0   29 29
No Yes Heterobasidion annosum   29 29
No Yes Gloeophyllum trabeumv1.0   29 28
No Yes Punctularia strigosozonata v1.0   27 27
No Yes Sebacina vermifera MAFF 305830 v1.0   30 30
No Yes Fomitiporia mediterranea v1.0   30 30
No Yes Tulasnella calospora AL13/4D v1.0   34 34
No Yes Postia placenta   40 40
No Yes Wolfiporia cocos MD-104 SS10 v1.0   29 29
No Yes Fomitopsis pinicolav1.0   29 29
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   28 28
No Yes Phanerochaete chrysosporium RP-78 2.1   28 28
No Yes Dichomitus squalens   32 31
No Yes Trametes versicolor v1.0   25 25
No Yes Tremella mesenterica Witches' butter 22 22
No Yes Daldinia eschscholzii EC12 v1.0   24 22
No Yes Apiospora montagnei NRRL 25634 v1.0   24 23
No Yes Magnaporthe poae ATCC 64411 22   25 24
No Yes Magnaporthe grisea 70-15   26 24
No Yes Podospora anserina   23 21
No Yes Sporotrichum thermophile ATCC 42464   24 23
No Yes Thielavia terrestris NRRL 8126   25 23
No Yes Chaetomium globosum CBS 148.51   25 23
No Yes Neurospora tetrasperma   23 22
No Yes Neurospora discreta FGSC 8579   24 22
No Yes Neurospora crassa OR74A   26 25
No Yes Cryphonectria parasitica Chestnut blight fungus 24 23
No Yes Verticillium albo-atrum VaMs.102   18 18
No Yes Verticillium dahliae VdLs.17   23 22
No Yes Acremonium alcalophilumv 1.0   23 22
No Yes Glomerella graminicola 22   24 23
No Yes Fusarium graminearum   24 22
No Yes Nectria haematococca mpVI   26 24
No Yes Fusarium oxysporum f. sp. lycopersici 4286   27 25
No Yes Fusarium verticillioides 7600   25 23
No Yes Trichoderma asperellum CBS 433.97 v1.0   27 25
No Yes Trichoderma atroviride   25 23
No Yes Trichoderma citrinoviride v1.0   23 21
No Yes Trichoderma reesei 1.2   24 22
No Yes Trichoderma virens Gv29-8   26 24
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   24 22
No Yes Trichoderma harzianum CBS 226.95 v1.0   27 25
No Yes Amorphotheca resinae v1.0 Creosote fungus 25 23
No Yes Botrytis cinerea B05.10   23 22
No Yes Sclerotinia sclerotiorum   23 21
No Yes Blumeria graminis 22   25 23
No Yes Didymella exigua CBS 183.55 v1.0   25 24
No Yes Leptosphaeria maculans 22   23 22
No Yes Setosphaeria turcica v1.0   25 24
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   24 23
No Yes Cochliobolus victoriae FI3 v1.0   24 23
No Yes Cochliobolus carbonum 26-R-13 v1.0   24 23
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 22 21
No Yes Alternaria brassicicola   17 16
No Yes Cochliobolus lunatus m118 v2.0   24 23
No Yes Pyrenophora teres f. teres 22   24 23
No Yes Pyrenophora tritici-repentis   49 48
No Yes Stagonospora nodorum   23 23
No Yes Mycosphaerella graminicola IPO323   19 19
No Yes Zasmidium cellare ATCC 36951 v1.0   26 25
No Yes Dothistroma septosporum   22 21
No Yes Septoria musiva v1.0   42 42
No Yes Mycosphaerella fijiensis CIRAD86   36 36
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   24 23
No Yes Paracoccidioides brasiliensis Pb18   24 23
No Yes Coccidioides posadasii RMSCC 3488   22 21
No Yes Coccidioides immitis RS   38 37
No Yes Ajellomyces dermatitidis SLH14081   32 31
No Yes Histoplasma capsulatum class NAmI strain WU24   20 19
No Yes Microsporum canis CBS 113480   24 23
No Yes Trichophyton equinum CBS 127.97   24 23
No Yes Trichophyton verrucosum HKI 0517   20 19
No Yes Arthroderma benhamiae CBS 112371   20 19
No Yes Trichophyton tonsurans CBS 112818   22 21
No Yes Trichophyton rubrum CBS 118892   24 23
No Yes Uncinocarpus reesii 1704   19 18
No Yes Aspergillus zonatus v1.0   24 23
No Yes Penicillium chrysogenum Wisconsin 54-1255   23 22
No Yes Penicillium chrysogenum v1.0   22 21
No Yes Aspergillus acidus v1.0   24 23
No Yes Aspergillus fumigatus Af293   22 21
No Yes Aspergillus brasiliensis v1.0   23 22
No Yes Aspergillus nidulans FGSC A4   23 22
No Yes Aspergillus sydowii v1.0   23 22
No Yes Aspergillus versicolor v1.0   23 22
No Yes Aspergillus glaucus   24 23
No Yes Aspergillus carbonarius ITEM 5010   23 22
No Yes Neosartorya fischeri NRRL 181   23 22
No Yes Aspergillus terreus NIH2624   22 21
No Yes Aspergillus tubingensis v1.0   24 23
No Yes Aspergillus wentii v1.0   24 23
No Yes Aspergillus oryzae RIB40   23 21
No Yes Aspergillus niger 22   22 21
No Yes Aspergillus niger ATCC 1015   14 13
No Yes Aspergillus flavus NRRL3357   24 22
No Yes Aspergillus clavatus NRRL 1   23 22
No Yes Penicillium marneffei ATCC 18224   27 26
No Yes Tuber melanosporum Mel28 22   25 23
No Yes Tuber melanosporum Vittad Perigord truffle 27 25
No Yes Hansenula polymorpha v2.0   24 23
No Yes Dekkera bruxellensis CBS 2499 v2.0   26 25
No Yes Pichia membranifaciensv1.0   24 23
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   27 27
No Yes Candida dubliniensis CD36   28 27
No Yes Candida tropicalis MYA-3404   28 27
No Yes Candida parapsilosis   24 23
No Yes Candida albicans SC5314   26 25
No Yes Lodderomyces elongisporus NRRL YB-4239   24 23
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   25 25
No Yes Pichia stipitis CBS 6054   28 27
No Yes Candida guilliermondii ATCC 6260   23 23
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   27 26
No Yes Debaromyces hansenii   27 26
No Yes Wickerhamomyces anomalus   23 22
No Yes Pichia pastoris GS115   20 20
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   15 15
No Yes Yarrowia lipolytica CLIB122   25 24
No Yes Candida lusitaniae ATCC 42720   24 22
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   25 24
No Yes Vanderwaltozyma polyspora DSM 70294   23 23
No Yes Candida glabrata CBS138   27 27
No Yes Kluyveromyces thermotolerans CBS 6340   23 23
No Yes Lachancea kluyveri   23 23
No Yes Kluyveromyces waltii   23 23
No Yes Ashbya gossypii ATCC 10895   22 22
No Yes Zygosaccharomyces rouxii   22 22
No Yes Saccharomyces mikatae MIT   24 24
No Yes Saccharomyces paradoxus MIT   23 23
No Yes Saccharomyces cerevisiae 76 Baker's yeast 24 24
No Yes Saccharomyces bayanus MIT   23 23
No Yes Kluyveromyces lactis   24 23
No Yes Schizosaccharomyces cryophilus OY26 22   26 26
No Yes Schizosaccharomyces octosporus yFS286   26 26
No Yes Schizosaccharomyces japonicus yFS275   26 26
No Yes Schizosaccharomyces pombe Fission yeast 25 25
No Yes Catenaria anguillulae PL171 v1.0   25 25
No Yes Allomyces macrogynus ATCC 38327   40 38
No Yes Spizellomyces punctatus DAOM BR117   31 31
No Yes Dictyostelium discoideum   29 29
No Yes Dictyostelium purpureum   30 29
No Yes Entamoeba dispar 1.2   25 25
No Yes Entamoeba invadens 1.2   26 26
No Yes Entamoeba histolytica 1   22 22
No Yes Selaginella moellendorffii   76 76
No Yes Pinus taeda Loblolly pine 244 224
No Yes Picea abies Norway spruce 131 129
No Yes Eucalyptus grandis v201 Rose gum 87 87
No Yes Theobroma cacao B97-61/B2 v1 Cacao 67 67
No Yes Gossypium raimondii v221   208 208
No Yes Citrus clementina v165   89 89
No Yes Citrus sinensis v154 Sweet orange 118 118
No Yes Thellungiella halophila v173   79 79
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 112 112
No Yes Capsella rubella v183   78 78
No Yes Arabidopsis lyrata Lyrate rockcress 108 103
No Yes Arabidopsis thaliana 10 Thale cress 121 121
No Yes Carica papaya Papaya 48 48
No Yes Medicago truncatula Barrel medic 164 164
No Yes Phaseolus vulgaris v186 French bean 103 103
No Yes Glycine max v109 Soybean 177 177
No Yes Cucumis sativus v122 Cucumber 90 90
No Yes Fragaria vesca Wild strawberry 87 87
No Yes Malus domestica v196 Apple 190 189
No Yes Prunus persica v139 Peach 68 68
No Yes Linum usitatissimum v200 Flax 134 132
No Yes Manihot esculenta v147 Cassava 102 102
No Yes Populus trichocarpa v156 Black cottonwood 127 126
No Yes Vitis vinifera Wine grape 73 73
No Yes Mimulus guttatus v140 Spotted monkey flower 146 146
No Yes Solanum lycopersicum v.2.3 Tomato 131 129
No Yes Solanum tuberosum Potato 149 149
No Yes Actinidia chinensis Hongyang   95 94
No Yes Aquilegia coerulea v195   101 101
No Yes Triticum urartu 22   165 161
No Yes Triticum aestivum 22 Bread wheat 489 489
No Yes Aegilops tauschii 22   159 158
No Yes Brachypodium distachyon Stiff brome 113 111
No Yes Oryza barthii 22 African wild rice 96 95
No Yes Oryza meridionalis 22   102 91
No Yes Oryza glumaepatula 22   96 94
No Yes Oryza glaberrima African rice 73 73
No Yes Oryza punctata 22   99 97
No Yes Oryza nivara 22   113 110
No Yes Oryza brachyantha 22 Malo sina 79 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 105 105
No Yes Oryza sativa v193 Rice 99 99
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 87 86
No Yes Panicum virgatum v202 Switchgrass 190 190
No Yes Setaria italica v164 Foxtail millet 100 100
No Yes Zea mays subsp. mays Maize 221 220
No Yes Zea mays v181 Maize 223 222
No Yes Sorghum bicolor Sorghum 99 98
No Yes Musa balbisiana Balbis banana 109 109
No Yes Musa acuminata 22 Wild Malaysian banana 112 112
No Yes Amborella trichopoda 22   60 60
No Yes Physcomitrella patens   77 77
No Yes Coccomyxa subellipsoidea sp. C-169 v2   47 47
No Yes Asterochloris sp. Cgr/DA1pho v1.0   36 36
No Yes Chlorella variabilis sp. NC64A   43 43
No Yes Chlorella vulgaris   44 43
No Yes Volvox carteri f. nagariensis   63 61
No Yes Volvox carteri v199   65 65
No Yes Chlamydomonas reinhardtii 4.0   136 136
No Yes Ostreococcus sp. RCC809   26 26
No Yes Ostreococcus lucimarinus CCE9901   23 23
No Yes Ostreococcus tauri   25 25
No Yes Bathycoccus prasinos   28 28
No Yes Micromonas sp. RCC299   28 28
No Yes Micromonas pusilla CCMP1545 v3.0   29 29
No Yes Cyanidioschyzon merolae strain 10D 22   19 19
No Yes Cyanidioschyzon merolae   22 22
No Yes Porphyridium purpureum 02_2012   23 23
No Yes Thecamonas trahens ATCC 50062   38 30
No Yes Bigelowiella natans CCMP2755 22   38 37
No Yes Giardia lamblia 2.3   15 15
No Yes Cyanophora paradoxa   41 41
No Yes Leishmania mexicana 2.4   27 27
No Yes Leishmania major strain Friedlin   31 31
No Yes Leishmania infantum JPCM5 2.4   24 24
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   35 35
No Yes Trypanosoma vivax   41 41
No Yes Trypanosoma cruzi strain CL Brener   26 26
No Yes Trypanosoma congolense 2.4   17 17
No Yes Trypanosoma brucei gambiense v4.1   34 34
No Yes Trypanosoma brucei TREU927 v4.1   50 50
No Yes Ectocarpus siliculosus   50 50
No Yes Aureococcus anophagefferens   55 55
No Yes Albugo laibachii 22   25 25
No Yes Pythium iwayamai DAOM BR242034 22   21 21
No Yes Pythium arrhenomanes ATCC 12531 22   19 19
No Yes Pythium ultimum v1.7-2   35 35
No Yes Pythium aphanidermatum DAOM BR444 22   25 25
No Yes Pythium irregulare DAOM BR486 22   22 22
No Yes Pythium vexans DAOM BR484 22   22 21
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 29 29
No Yes Phytophthora sojae 1.1   24 24
No Yes Phytophthora infestans T30-4   28 28
No Yes Phytophthora capsici   31 31
No Yes Hyaloperonospora arabidopsidis 22   25 25
No Yes Phaeodactylum tricornutumCCAP 1055/1   23 23
No Yes Fragilariopsis cylindrus   48 48
No Yes Thalassiosira pseudonana CCMP1335   34 34
No Yes Perkinsus marinus ATCC 50983   108 107
No Yes Paramecium tetraurelia   62 62
No Yes Tetrahymena thermophila SB210 1   20 20
No Yes Ichthyophthirius multifiliis strain G5   27 27
No Yes Cryptosporidium hominis   12 12
No Yes Cryptosporidium muris   13 13
No Yes Cryptosporidium parvum Iowa II   12 12
No Yes Neospora caninum   10 10
No Yes Toxoplasma gondii VEG   11 11
No Yes Toxoplasma gondii ME49   12 12
No Yes Toxoplasma gondii GT1   11 11
No Yes Babesia bovis T2Bo   22 22
No Yes Theileria parva   12 12
No Yes Theileria annulata   13 13
No Yes Plasmodium falciparum 3D7   12 12
No Yes Plasmodium vivax SaI-1 7.0   12 12
No Yes Plasmodium knowlesi strain H   12 12
No Yes Plasmodium yoelii ssp. yoelii 1   9 9
No Yes Plasmodium chabaudi   12 12
No Yes Plasmodium berghei ANKA   12 12
No Yes Symbiodinium minutum clade B1 v1.2   17 17
No Yes Naegleria gruberi   32 32
No Yes Trichomonas vaginalis   91 91
No Yes Guillardia theta CCMP2712 v1.0   40 40
No Yes Emiliania huxleyi CCMP1516   81 79
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   3 3
No Yes Rhodococcus opacus B4   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Thermus thermophilus HB27   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Simkania negevensis Z   2 2
No Yes Thermovibrio ammonificans HB-1   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Aquifex aeolicus VF5   2 2
No Yes Bacteriovorax marinus SJ   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Nautilia profundicola AmH   1 1
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Nanoarchaeum equitans Kin4-M   2 2
No Yes Candidatus Caldiarchaeum subterraneum   2 2
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   2 2
No Yes Thermofilum sp. 1910b   1 1
No Yes Thermofilum pendens Hrk 5   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes halophilic archaeon DL31   4 3
No Yes Methanocella arvoryzae MRE50   2 2
No Yes Methanocella conradii HZ254   2 2
No Yes Methanocella paludicola SANAE   2 2
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   1 1
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoregula boonei 6A8   1 1
No Yes Methanospirillum hungatei JF-1   5 5
No Yes Methanocorpusculum labreanum Z   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   2 2
No Yes Methanoculleus marisnigri JR1   2 2
No Yes Methanopyrus kandleri AV19   3 3
No Yes Ferroglobus placidus DSM 10642   2 2
No Yes Archaeoglobus profundus DSM 5631   3 3
No Yes Archaeoglobus veneficus SNP6   3 3
No Yes Archaeoglobus fulgidus DSM 4304   2 2
No Yes Thermococcus sp. 4557   4 4
No Yes Thermococcus onnurineus NA1   3 3
No Yes Thermococcus kodakarensis KOD1   4 4
No Yes Thermococcus gammatolerans EJ3   4 4
No Yes Thermococcus sibiricus MM 739   3 3
No Yes Thermococcus barophilus MP   3 3
No Yes Pyrococcus sp. ST04   2 2
No Yes Pyrococcus yayanosii CH1   2 2
No Yes Pyrococcus horikoshii OT3   2 2
No Yes Pyrococcus abyssi GE5   2 2
No Yes Pyrococcus furiosus COM1   4 4
No Yes Salinarchaeum sp. Harcht-Bsk1   3 2
No Yes Halopiger xanaduensis SH-6   3 2
No Yes Haloterrigena turkmenica DSM 5511   3 2
No Yes Natrinema sp. J7-2   4 3
No Yes Natrialba magadii ATCC 43099   3 2
No Yes Halorubrum lacusprofundi ATCC 49239   3 2
No Yes Haloquadratum walsbyi DSM 16790   3 2
No Yes Halogeometricum borinquense DSM 11551   3 2
No Yes Haloferax mediterranei ATCC 33500   3 2
No Yes Haloferax volcanii DS2   5 4
No Yes Halomicrobium mukohataei DSM 12286   3 2
No Yes Halorhabdus utahensis DSM 12940   3 2
No Yes Natronomonas pharaonis DSM 2160   3 2
No Yes Haloarcula hispanica ATCC 33960   2 2
No Yes Haloarcula marismortui ATCC 43049   4 3
No Yes Halalkalicoccus jeotgali B3   6 5
No Yes Halobacterium salinarum R1   5 4
No Yes Halobacterium sp. NRC-1   5 4
No Yes Methanotorris igneus Kol 5   4 4
No Yes Methanocaldococcus sp. FS406-22   5 5
No Yes Methanocaldococcus fervens AG86   5 5
No Yes Methanocaldococcus vulcanius M7   6 6
No Yes methanocaldococcus infernus ME   3 3
No Yes Methanocaldococcus jannaschii DSM 2661   6 6
No Yes Methanothermococcus okinawensis IH1   3 3
No Yes Methanococcus aeolicus Nankai-3   3 3
No Yes Methanococcus maripaludis C5   3 3
No Yes Methanococcus voltae A3   3 3
No Yes Methanococcus vannielii SB   3 3
No Yes Methanothermus fervidus DSM 2088   2 2
No Yes Methanothermobacter marburgensis str. Marburg   3 3
No Yes Methanothermobacter thermautotrophicus str. Delta H   3 3
No Yes Methanosphaera stadtmanae DSM 3091   6 6
No Yes Methanobrevibacter sp. AbM4   3 3
No Yes Methanobrevibacter ruminantium M1   6 6
No Yes Methanobrevibacter smithii ATCC 35061   3 3
No Yes Complete genome sequence of Methanobacterium sp. Mb1   3 3
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 273 265
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 126 126
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 56 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 42 42
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 90 90
No Yes Cryptococcus neoformans var. grubii H99   21 21
No Yes Cryptococcus neoformans B-3501A   22 22
No Yes Cryptococcus neoformans JEC21   17 17
No Yes Paracoccidioides brasiliensis Pb01   36 35
No Yes Paracoccidioides brasiliensis Pb03   24 23
No Yes Coccidioides posadasii str. Silveira   26 25
No Yes Coccidioides immitis RMSCC 3703   20 20
No Yes Coccidioides immitis RMSCC 2394   22 21
No Yes Coccidioides immitis H538.4   20 20
No Yes Ajellomyces dermatitidis ER-3   40 39
No Yes Histoplasma capsulatum H143   17 17
No Yes Histoplasma capsulatum H88   20 20
No Yes Histoplasma capsulatum G186AR   23 22
No Yes Aspergillus fumigatus A1163   23 22
No Yes Candida albicans WO-1   27 26
No Yes Saccharomyces cerevisiae UC5   19 19
No Yes Saccharomyces cerevisiae PW5   18 18
No Yes Saccharomyces cerevisiae FL100   17 17
No Yes Saccharomyces cerevisiae CLIB382   8 8
No Yes Saccharomyces cerevisiae CLIB324   15 15
No Yes Saccharomyces cerevisiae CBS7960   18 18
No Yes Saccharomyces cerevisiae YJM269   22 22
No Yes Saccharomyces cerevisiae T7   24 24
No Yes Saccharomyces cerevisiae FostersB   23 23
No Yes Saccharomyces cerevisiae FostersO   21 21
No Yes Saccharomyces cerevisiae VL3   23 23
No Yes Saccharomyces cerevisiae Vin13   22 22
No Yes Saccharomyces cerevisiae LalvinQA23   22 22
No Yes Saccharomyces cerevisiae AWRI796   21 21
No Yes Saccharomyces cerevisiae Sigma1278b   24 24
No Yes Saccharomyces cerevisiae W303   24 24
No Yes Saccharomyces cerevisiae JAY291   24 24
No Yes Saccharomyces cerevisiae AWRI1631   18 18
No Yes Saccharomyces cerevisiae YPS163   13 13
No Yes Saccharomyces cerevisiae M22   12 12
No Yes Saccharomyces cerevisiae T73   14 14
No Yes Saccharomyces cerevisiae CLIB215   19 19
No Yes Saccharomyces cerevisiae Y10   12 12
No Yes Saccharomyces cerevisiae YJM789   22 22
No Yes Saccharomyces cerevisiae YJM789   24 24
No Yes Saccharomyces cerevisiae RM11-1a   24 24
No Yes Saccharomyces cerevisiae RM11-1a   24 24
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 24 24
No Yes Schizosaccharomyces pombe 972h-   25 25
No Yes Batrachochytrium dendrobatidis JEL423   20 19
No Yes Batrachochytrium dendrobatidis JAM81   21 20
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 67 67
No Yes Hordeum vulgare 22 Domesticated barley 100 100
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 94 94
No Yes Trypanosoma brucei Lister 427 v4.1   50 50
No Yes Neospora caninum Nc-Liverpool 6.2   10 10
No Yes Plasmodium falciparum HB3   12 12
No Yes Plasmodium falciparum Dd2   4 4
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Thermus thermophilus HB8   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   2 2
No Yes Archaeoglobus sulfaticallidus PM70-1   3 3
No Yes Thermococcus sp. AM4   4 4
No Yes Thermococcus sp. CL1   4 4
No Yes Thermococcus litoralis DSM 5473   3 3
No Yes Pyrococcus sp. NA2   2 2
No Yes Pyrococcus furiosus DSM 3638   4 4
No Yes Halovivax ruber XH-70   3 2
No Yes Natrinema pellirubrum DSM 15624   4 3
No Yes Natronococcus occultus SP4   3 2
No Yes Natronobacterium gregoryi SP2   3 2
No Yes Haloquadratum walsbyi C23   3 2
No Yes Halorhabdus tiamatea SARL4B   3 2
No Yes Natronomonas moolapensis 8.8.11   3 2
No Yes Haloarcula hispanica N601   2 2
No Yes Methanococcus maripaludis X1   3 3
No Yes Methanococcus maripaludis C6   3 3
No Yes Methanococcus maripaludis C7   3 3
No Yes Methanococcus maripaludis S2   3 3
No Yes Methanobacterium sp. SWAN-1   3 3
No Yes Homo sapiens 75_37 (old version GRC) Human 265 261
No Yes Homo sapiens (NCBI version) Human 141 139
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 120 118
No Yes Heliconius numata (Incomplete)   19 19
No Yes Loa loa v3.3 (Request) Eye worm 39 39
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 33 33
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 33 33
No Yes Moniliophthora perniciosa FA553 (Genome survey)   20 19
No Yes Encephalitozoon intestinalis (endoparasite)   15 15
No Yes Encephalitozoon cuniculi (endoparasite)   15 15
No Yes Pinus sylvestris (Incomplete) Scots pine 2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 30 30
No Yes Lotus japonicus (Early assembly)   99 99
No Yes Malus x domestica (Duplicate) Apple 191 190
No Yes Ricinus communis (Early assembly) Castor bean 67 67
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   167 159
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 131 129
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 131 129
No Yes Phoenix dactylifera (Early draft) Date palm 22 21
No Yes Guillardia theta (nucleomorph)   5 5
No Yes Homo sapiens 69_37 Human 121 119
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 95 94
No Yes Gorilla gorilla 69_3.1 Western gorilla 98 97
No Yes Pongo abelii 69_2 Sumatran orangutan 97 96
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 92 91
No Yes Macaca mulatta 69_1 Rhesus monkey 125 124
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 101 101
No Yes Otolemur garnettii 69_3 Small-eared galago 104 103
No Yes Microcebus murinus 69_1 Gray mouse lemur 84 83
No Yes Rattus norvegicus 69_3.4 Norway rat 93 92
No Yes Mus musculus 69_38 House mouse 120 118
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 83 81
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 86 85
No Yes Cavia porcellus 69_3 Domestic guinea pig 80 79
No Yes Oryctolagus cuniculus 69_2 Rabbit 94 93
No Yes Ochotona princeps 69 American pika 90 89
No Yes Tupaia belangeri 69 Northern tree shrew 51 50
No Yes Sus scrofa 69_10.2 Pig 88 86
No Yes Bos taurus 69_3.1 Cattle 180 178
No Yes Vicugna pacos 69_1 Alpaca 60 60
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 93 91
No Yes Mustela putorius furo 69_1.0 Domestic ferret 62 60
No Yes Ailuropoda melanoleuca 69_1 Giant panda 101 100
No Yes Canis familiaris 69_3.1 Dog 100 98
No Yes Felis catus 69 Domestic cat 58 57
No Yes Equus caballus 69_2 Horse 97 96
No Yes Myotis lucifugus 69_2.0 Little brown bat 94 93
No Yes Pteropus vampyrus 69_1 Large flying fox 78 77
No Yes Sorex araneus 69_1 European shrew 97 96
No Yes Erinaceus europaeus 69 Western European hedgehog 74 73
No Yes Procavia capensis 69_1 Cape rock hyrax 72 72
No Yes Loxodonta africana 69_3 African savanna elephant 110 109
No Yes Echinops telfairi 69 Small Madagascar hedgehog 73 72
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 81 79
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 67 66
No Yes Macropus eugenii 69_1.0 Tammar wallaby 54 54
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 61 61
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 53 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 131 129
No Yes Petromyzon marinus 69_7.0 Sea lamprey 54 54
No Yes Meleagris gallopavo 69_2 Turkey 40 40
No Yes Gallus gallus 69_2 Chicken 54 53
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 73 72
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 72 70
No Yes Anolis carolinensis 69_2.0 Green anole 60 60
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 168 166
No Yes Latimeria chalumnae 69_1 Coelacanth 54 51
No Yes Gadus morhua 69_1 Atlantic cod 114 112
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 78 75
No Yes Takifugu rubripes 69_4 Torafugu 124 119
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 122 121
No Yes Oryzias latipes 69_1 Japanese medaka 72 72
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 48 46
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 61 59
No Yes Danio rerio 69_9 Zebrafish 152 148
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 43 38
No Yes Ciona intestinalis 69 Vase tunicate 20 20
No Yes Drosophila melanogaster 69_5 Fruit fly 111 111
No Yes Caenorhabditis elegans 69_215 Roundworm 87 87
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 24 24
No Yes Arabidopsis thaliana 10 Thale cress 84 84
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   3 3
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 2
No Yes Core Eukaryotic Genes 458 (CEGMA)   6 6
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   6 6
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   57299 55181
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes Protozoadb 2010_08 (Protozoadb)   748 748
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   5 5
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   6 6
No Yes STRING v9.0.5 (STRING)   7047 6927
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   87784 86141
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   13 13
No Yes Global Ocean Sampling Expedition (GOS)   267 253
No Yes NCBI plasmid sequences (Plasmids)   16 16
No Yes NCBI viral sequences (Viral)   31 21
No Yes PDB chains (SCOP 1.75) (PDB)   82 81
No Yes Protein Data Bank (all PDB sequenc)   1903 1892
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3262 3252
No Yes TargetDB (Targets)   145 145
No Yes UniProt viral sequences (Viral)   13 10

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