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Apolipoprotein superfamily domain assignments
in
Pasteurella multocida subsp. multocida str. Pm70

Assignment details

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Pasteurella multocida subsp. multocida str. Pm70 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15603555|ref|NP_246629.1|   0.0000575   32-131   Apolipoprotein  

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Select to display   Genome       Domains   Proteins
No Yes ALL   12918 12918
No Yes Homo sapiens 76_38 Human 4 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 3 2
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Papio anubis 76 Olive baboon 2 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 2 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 7 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 3 3
No Yes Ochotona princeps 76 American pika 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 1
No Yes Canis familiaris 76_3.1 Dog 3 2
No Yes Felis catus 76_6.2 Domestic cat 3 2
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 4 2
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 4 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Danio rerio 76_9 Zebrafish 5 5
No Yes Crassostrea gigas 22 Pacific oyster 2 2
No Yes Lottia gigantea Owl limpet 1 1
No Yes Capitella sp. I   1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Strigamia maritima 22   1 1
No Yes Meloidogyne hapla   1 1
No Yes Amphimedon queenslandica   2 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Ustilago maydis   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Candida lusitaniae ATCC 42720   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Tetrahymena thermophila SB210 1   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium chabaudi   3 2
No Yes Trichomonas vaginalis   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Chloroflexus sp. MS-G   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Thermincola potens JR   1 1
No Yes Pelotomaculum thermopropionicum SI   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Clostridium sticklandii DSM 519   1 1
No Yes [Ruminococcus] torques   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Mahella australiensis 50-1 BON   3 3
No Yes Thermosediminibacter oceani DSM 16646   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Moorella thermoacetica ATCC 39073   2 2
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Enterococcus hirae ATCC 9790   1 1
No Yes Weissella koreensis KACC 15510   1 1
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus gasseri ATCC 33323   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus pasteurianus ATCC 43144   1 1
No Yes Streptococcus macedonicus ACA-DC 198   1 1
No Yes Streptococcus mitis B6   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus sanguinis SK36   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Streptococcus gordonii str. Challis substr. CH1   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Geobacillus sp. GHH01   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Simkania negevensis Z   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Turneriella parva DSM 21527   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia hermsii DAH   4 3
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Thermodesulfatator indicus DSM 15286   2 2
No Yes Desulfurispirillum indicum S5   2 2
No Yes Candidatus Saccharimonas aalborgensis   1 1
No Yes Desulfobacca acetoxidans DSM 11109   3 3
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Laribacter hongkongensis HLHK9   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Rhodospirillum photometricum DSM 122   2 2
No Yes Rhodospirillum rubrum F11   1 1
No Yes Rickettsia philipii str. 364D   1 1
No Yes Rickettsia heilongjiangensis 054   1 1
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Rickettsia slovaca 13-B   1 1
No Yes Rickettsia parkeri str. Portsmouth   1 1
No Yes Rickettsia japonica YH   1 1
No Yes Rickettsia africae ESF-5   1 1
No Yes Candidatus Rickettsia amblyommii str. GAT-30V   1 1
No Yes Rickettsia australis str. Cutlack   1 1
No Yes Rickettsia akari str. Hartford   1 1
No Yes Rickettsia rickettsii str. 'Sheila Smith'   1 1
No Yes Rickettsia conorii str. Malish 7   1 1
No Yes Haemophilus somnus 129PT   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Pyrolobus fumarii 1A   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Thermosphaera aggregans DSM 11486   1 1
No Yes Acidianus hospitalis W1   1 1
No Yes Pyrobaculum oguniense TE7   1 1
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Lactobacillus johnsonii N6.2   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Streptococcus anginosus C238   1 1
No Yes Streptococcus anginosus C1051   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae SPNA45   1 1
No Yes Streptococcus pneumoniae SPN994039   1 1
No Yes Streptococcus pneumoniae SPN994038   1 1
No Yes Streptococcus pneumoniae SPN034183   1 1
No Yes Streptococcus pneumoniae SPN034156   1 1
No Yes Streptococcus pneumoniae INV104   1 1
No Yes Streptococcus pneumoniae INV200   1 1
No Yes Streptococcus pneumoniae OXC141   1 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae AP200   1 1
No Yes Streptococcus pneumoniae ATCC 700669   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae CGSP14   1 1
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   1 1
No Yes Streptococcus pneumoniae D39   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus pneumoniae R6   1 1
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Geobacillus sp. Y412MC52   1 1
No Yes Geobacillus sp. Y412MC61   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   1 1
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia burgdorferi JD1   1 1
No Yes Borrelia burgdorferi N40   1 1
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Rickettsia slovaca str. D-CWPP   1 1
No Yes Rickettsia rickettsii str. Arizona   1 1
No Yes Rickettsia rickettsii str. Brazil   1 1
No Yes Rickettsia rickettsii str. Hauke   1 1
No Yes Rickettsia rickettsii str. Colombia   1 1
No Yes Rickettsia rickettsii str. Hlp#2   1 1
No Yes Rickettsia rickettsii str. Hino   1 1
No Yes Rickettsia rickettsii str. Iowa   1 1
No Yes Candidatus Liberibacter solanacearum CLso-ZC1   1 1
No Yes Candidatus Liberibacter americanus str. Sao Paulo   1 1
No Yes Candidatus Liberibacter asiaticus str. gxpsy   1 1
No Yes Haemophilus somnus 2336   1 1
No Yes Pasteurella multocida subsp. multocida str. Pm70   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 4 4
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Ochotona princeps 69 American pika 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 1
No Yes Canis familiaris 69_3.1 Dog 2 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 2 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   3 3
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   5 5
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   10290 10277
No Yes Protozoadb 2010_08 (Protozoadb)   11 11
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   90 89
No Yes Uniprot 2018_03 genome   1744 1725
No Yes Global Ocean Sampling Expedition (GOS)   22 22
No Yes NCBI plasmid sequences (Plasmids)   28 27
No Yes NCBI viral sequences (Viral)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   14 14
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   42 42
No Yes TargetDB (Targets)   2 2
No Yes UniProt viral sequences (Viral)   3 3

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