SUPERFAMILY 1.75 HMM library and genome assignments server

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EF-hand superfamily domain assignments
in
Vibrio vulnificus YJ016


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Select to display   Genome       Domains   Proteins
No Yes ALL   650115 650115
No Yes Homo sapiens 76_38 Human 1170 1021
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 292 254
No Yes Gorilla gorilla 76_3.1 Western gorilla 400 346
No Yes Pongo abelii 76_2 Sumatran orangutan 317 270
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 296 256
No Yes Papio anubis 76 Olive baboon 329 279
No Yes Macaca mulatta 76_1 Rhesus monkey 518 443
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 679 570
No Yes Otolemur garnettii 76_3 Small-eared galago 352 312
No Yes Microcebus murinus 76_1 Gray mouse lemur 239 204
No Yes Rattus norvegicus 76_5.0 Norway rat 372 319
No Yes Mus musculus 76_38 House mouse 689 600
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 221 194
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 294 262
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 312 275
No Yes Cavia porcellus 76_3 Domestic guinea pig 295 256
No Yes Oryctolagus cuniculus 76_2 Rabbit 294 250
No Yes Ochotona princeps 76 American pika 230 202
No Yes Tupaia belangeri 76 Northern tree shrew 206 181
No Yes Sus scrofa 76_10.2 Pig 408 366
No Yes Bos taurus 76_3.1 Cattle 322 275
No Yes Ovis aries 76_3.1 Sheep 344 293
No Yes Vicugna pacos 76_1 Alpaca 170 146
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 259 223
No Yes Mustela putorius furo 76_1.0 Domestic ferret 311 257
No Yes Ailuropoda melanoleuca 76_1 Giant panda 343 294
No Yes Canis familiaris 76_3.1 Dog 411 351
No Yes Felis catus 76_6.2 Domestic cat 312 269
No Yes Equus caballus 76_2 Horse 355 306
No Yes Myotis lucifugus 76_2.0 Little brown bat 293 258
No Yes Pteropus vampyrus 76_1 Large flying fox 271 234
No Yes Sorex araneus 76_1 European shrew 159 142
No Yes Erinaceus europaeus 76 Western European hedgehog 195 171
No Yes Procavia capensis 76_1 Cape rock hyrax 260 228
No Yes Loxodonta africana 76_3 African savanna elephant 405 345
No Yes Echinops telfairi 76 Small Madagascar hedgehog 198 178
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 379 317
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 159 136
No Yes Macropus eugenii 76_1.0 Tammar wallaby 236 209
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 341 284
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 372 270
No Yes Ornithorhynchus anatinus 76_5 Platypus 257 235
No Yes Saccoglossus kowalevskii v3.0   456 398
No Yes Petromyzon marinus 76_7.0 Sea lamprey 176 138
No Yes Meleagris gallopavo 76_2 Turkey 252 217
No Yes Gallus gallus 76_4 Chicken 249 219
No Yes Anas platyrhynchos 76_1.0 Mallard 229 197
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 236 207
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 244 211
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 306 265
No Yes Anolis carolinensis 76_2.0 Green anole 272 232
No Yes Xenopus laevis African clawed frog 544 477
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 324 267
No Yes Latimeria chalumnae 76_1 Coelacanth 313 272
No Yes Lepisosteus oculatus 76 Spotted gar 399 322
No Yes Gadus morhua 76_1 Atlantic cod 326 291
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 372 337
No Yes Takifugu rubripes 76_4 Torafugu 851 726
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 441 387
No Yes Oryzias latipes 76_1 Japanese medaka 374 331
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 331 291
No Yes Poecilia formosa 76 Amazon molly 346 309
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 450 393
No Yes Astyanax mexicanus 76 Mexican tetra 360 323
No Yes Danio rerio 76_9 Zebrafish 591 512
No Yes Oikopleura dioica   183 169
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 271 247
No Yes Ciona intestinalis 76 Vase tunicate 193 170
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 256 222
No Yes Adineta vaga   729 673
No Yes Octopus bimaculoides 280   268 238
No Yes Crassostrea gigas 22 Pacific oyster 347 289
No Yes Lottia gigantea Owl limpet 297 262
No Yes Helobdella robusta   212 191
No Yes Capitella sp. I   276 240
No Yes Danaus plexippus OGS1.0 Monarch butterfly 125 111
No Yes Heliconius melpomene Postman butterfly 106 94
No Yes Bombyx mori Domestic silkworm 109 102
No Yes Nasonia vitripennis Jewel wasp 95 82
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 279 235
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 117 102
No Yes Linepithema humile v1.1 Argentine ant 119 103
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 118 103
No Yes Solenopsis invicta v.2.2.3 Red fire ant 99 83
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 111 93
No Yes Atta cephalotes v1.1   115 99
No Yes Camponotus floridanus v3.3 Florida carpenter ant 115 100
No Yes Lucilia cuprina Australian sheep blowfly 108 88
No Yes Drosophila grimshawi 1.3   128 110
No Yes Drosophila willistoni 1.3   138 118
No Yes Drosophila pseudoobscura 2.13   132 112
No Yes Drosophila persimilis 1.3   127 109
No Yes Drosophila suzukii   151 117
No Yes Drosophila yakuba 1.3   137 120
No Yes Drosophila simulans 1.3   115 99
No Yes Drosophila sechellia 1.3   131 113
No Yes Drosophila melanogaster 76_5 Fruit fly 341 276
No Yes Drosophila erecta 1.3   129 112
No Yes Drosophila ananassae 1.3   135 117
No Yes Drosophila virilis 1.2   130 109
No Yes Drosophila mojavensis 1.3   128 111
No Yes Megaselia scalaris 22   54 49
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 145 125
No Yes Culex pipiens quinquefasciatus Southern house mosquito 121 109
No Yes Anopheles darlingi 22 American malaria mosquito 79 66
No Yes Anopheles gambiae 49_3j African malaria mosquito 120 102
No Yes Tribolium castaneum 3.0 Red flour beetle 137 114
No Yes Pediculus humanus corporis (Early assembly) Human body louse 120 105
No Yes Acyrthosiphon pisum Pea aphid 106 92
No Yes Rhodnius prolixus 22   110 101
No Yes Daphnia pulex Common water flea 122 106
No Yes Strigamia maritima 22   135 112
No Yes Sarcoptes scabiei   90 80
No Yes Tetranychus urticae Two-spotted spider mite 110 96
No Yes Ixodes scapularis (Preliminary) Black-legged tick 123 111
No Yes Pristionchus pacificus   115 103
No Yes Meloidogyne incognita Southern root-knot nematode 100 89
No Yes Meloidogyne hapla   61 53
No Yes Onchocerca volvulus 22   99 86
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 137 123
No Yes Caenorhabditis japonica   109 94
No Yes Caenorhabditis brenneri   139 119
No Yes Caenorhabditis remanei   127 108
No Yes Caenorhabditis elegans 76_235 Roundworm 225 191
No Yes Caenorhabditis briggsae 2   116 99
No Yes Trichinella spiralis 22   91 80
No Yes Hymenolepis microstoma   135 119
No Yes Echinococcus multilocularis   136 119
No Yes Echinococcus granulosus   134 115
No Yes Taenia solium Pork tapeworm 138 125
No Yes Schistosoma mansoni   180 158
No Yes Mnemiopsis leidyi Sea walnut 219 193
No Yes Thelohanellus kitauei   23 21
No Yes Acropora digitifera v1.0   187 173
No Yes Nematostella vectensis 1.0 Starlet sea anemone 260 222
No Yes Hydra vulgaris   167 148
No Yes Amphimedon queenslandica   168 149
No Yes Trichoplax adhaerens   156 131
No Yes Proterospongia sp. ATCC 50818   153 138
No Yes Monosiga brevicollis   116 103
No Yes Sphaeroforma arctica JP610   74 69
No Yes Capsaspora owczarzaki ATCC 30864   68 61
No Yes Conidiobolus coronatus NRRL28638 v1.0   42 37
No Yes Mortierella verticillata NRRL 6337   60 54
No Yes Phycomyces blakesleeanus   63 51
No Yes Rhizopus oryzae RA 99-880   64 53
No Yes Mucor circinelloides   69 61
No Yes Rhizomucor miehei CAU432   54 42
No Yes Malassezia globosa CBS 7966   36 32
No Yes Sporisorium reilianum 22   25 23
No Yes Ustilago maydis   27 25
No Yes Mixia osmundae IAM 14324 v1.0   24 22
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   26 23
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   29 26
No Yes Melampsora laricis-populina   28 26
No Yes Rhodotorula graminis WP1 v1.0   23 20
No Yes Sporobolomyces roseus IAM 13481   19 19
No Yes Microbotryum violaceum 22   26 24
No Yes Wallemia sebi v1.0   22 20
No Yes Sphaerobolus stellatus v1.0   32 29
No Yes Piloderma croceum F 1598 v1.0   40 33
No Yes Serpula lacrymans var. lacrymans S7.9   33 27
No Yes Coniophora puteana   28 25
No Yes Hydnomerulius pinastri v2.0   28 25
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   28 26
No Yes Pisolithus microcarpus 441 v1.0   30 27
No Yes Pisolithus tinctorius Marx 270 v1.0   36 33
No Yes Scleroderma citrinum Foug A v1.0   33 29
No Yes Coprinopsis cinerea okayama7 130 v3   31 26
No Yes Pleurotus ostreatus Oyster mushroom 30 27
No Yes Amanita thiersii Skay4041 v1.0   33 30
No Yes Amanita muscaria Koide v1.0 Fly agaric 36 33
No Yes Galerina marginata v1.0   40 35
No Yes Hebeloma cylindrosporum h7 v2.0   37 32
No Yes Laccaria bicolor S238N-H82   33 28
No Yes Agaricus bisporus var. bisporus   34 29
No Yes Schizophyllum commune   35 31
No Yes Stereum hirsutum FP-91666 SS1 v1.0   31 27
No Yes Heterobasidion annosum   28 25
No Yes Gloeophyllum trabeumv1.0   29 26
No Yes Punctularia strigosozonata v1.0   30 27
No Yes Sebacina vermifera MAFF 305830 v1.0   33 30
No Yes Fomitiporia mediterranea v1.0   28 26
No Yes Tulasnella calospora AL13/4D v1.0   40 38
No Yes Postia placenta   46 37
No Yes Wolfiporia cocos MD-104 SS10 v1.0   29 24
No Yes Fomitopsis pinicolav1.0   30 25
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   29 24
No Yes Phanerochaete chrysosporium RP-78 2.1   31 26
No Yes Dichomitus squalens   32 26
No Yes Trametes versicolor v1.0   32 26
No Yes Tremella mesenterica Witches' butter 22 21
No Yes Daldinia eschscholzii EC12 v1.0   32 28
No Yes Apiospora montagnei NRRL 25634 v1.0   30 28
No Yes Magnaporthe poae ATCC 64411 22   26 25
No Yes Magnaporthe grisea 70-15   34 30
No Yes Podospora anserina   32 26
No Yes Sporotrichum thermophile ATCC 42464   30 26
No Yes Thielavia terrestris NRRL 8126   30 26
No Yes Chaetomium globosum CBS 148.51   30 26
No Yes Neurospora tetrasperma   28 26
No Yes Neurospora discreta FGSC 8579   28 26
No Yes Neurospora crassa OR74A   33 29
No Yes Cryphonectria parasitica Chestnut blight fungus 29 25
No Yes Verticillium albo-atrum VaMs.102   26 23
No Yes Verticillium dahliae VdLs.17   28 24
No Yes Acremonium alcalophilumv 1.0   26 24
No Yes Glomerella graminicola 22   33 29
No Yes Fusarium graminearum   28 24
No Yes Nectria haematococca mpVI   31 26
No Yes Fusarium oxysporum f. sp. lycopersici 4286   35 31
No Yes Fusarium verticillioides 7600   29 24
No Yes Trichoderma asperellum CBS 433.97 v1.0   29 25
No Yes Trichoderma atroviride   30 26
No Yes Trichoderma citrinoviride v1.0   29 25
No Yes Trichoderma reesei 1.2   29 25
No Yes Trichoderma virens Gv29-8   30 26
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   28 24
No Yes Trichoderma harzianum CBS 226.95 v1.0   29 25
No Yes Amorphotheca resinae v1.0 Creosote fungus 30 26
No Yes Botrytis cinerea B05.10   33 29
No Yes Sclerotinia sclerotiorum   31 27
No Yes Blumeria graminis 22   30 26
No Yes Didymella exigua CBS 183.55 v1.0   29 25
No Yes Leptosphaeria maculans 22   30 27
No Yes Setosphaeria turcica v1.0   31 27
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   32 28
No Yes Cochliobolus victoriae FI3 v1.0   31 27
No Yes Cochliobolus carbonum 26-R-13 v1.0   31 27
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 30 26
No Yes Alternaria brassicicola   28 24
No Yes Cochliobolus lunatus m118 v2.0   31 27
No Yes Pyrenophora teres f. teres 22   31 27
No Yes Pyrenophora tritici-repentis   29 25
No Yes Stagonospora nodorum   30 26
No Yes Mycosphaerella graminicola IPO323   30 26
No Yes Zasmidium cellare ATCC 36951 v1.0   30 26
No Yes Dothistroma septosporum   31 27
No Yes Septoria musiva v1.0   34 30
No Yes Mycosphaerella fijiensis CIRAD86   27 23
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   32 28
No Yes Paracoccidioides brasiliensis Pb18   27 25
No Yes Coccidioides posadasii RMSCC 3488   32 28
No Yes Coccidioides immitis RS   36 31
No Yes Ajellomyces dermatitidis SLH14081   30 26
No Yes Histoplasma capsulatum class NAmI strain WU24   30 26
No Yes Microsporum canis CBS 113480   29 25
No Yes Trichophyton equinum CBS 127.97   26 22
No Yes Trichophyton verrucosum HKI 0517   26 24
No Yes Arthroderma benhamiae CBS 112371   29 25
No Yes Trichophyton tonsurans CBS 112818   29 25
No Yes Trichophyton rubrum CBS 118892   28 24
No Yes Uncinocarpus reesii 1704   27 23
No Yes Aspergillus zonatus v1.0   34 30
No Yes Penicillium chrysogenum Wisconsin 54-1255   33 29
No Yes Penicillium chrysogenum v1.0   30 26
No Yes Aspergillus acidus v1.0   33 29
No Yes Aspergillus fumigatus Af293   31 27
No Yes Aspergillus brasiliensis v1.0   33 29
No Yes Aspergillus nidulans FGSC A4   31 27
No Yes Aspergillus sydowii v1.0   35 30
No Yes Aspergillus versicolor v1.0   34 30
No Yes Aspergillus glaucus   31 27
No Yes Aspergillus carbonarius ITEM 5010   32 28
No Yes Neosartorya fischeri NRRL 181   31 27
No Yes Aspergillus terreus NIH2624   32 28
No Yes Aspergillus tubingensis v1.0   33 29
No Yes Aspergillus wentii v1.0   33 28
No Yes Aspergillus oryzae RIB40   30 26
No Yes Aspergillus niger 22   32 28
No Yes Aspergillus niger ATCC 1015   21 19
No Yes Aspergillus flavus NRRL3357   34 30
No Yes Aspergillus clavatus NRRL 1   29 26
No Yes Penicillium marneffei ATCC 18224   34 30
No Yes Tuber melanosporum Mel28 22   30 26
No Yes Tuber melanosporum Vittad Perigord truffle 30 26
No Yes Hansenula polymorpha v2.0   23 19
No Yes Dekkera bruxellensis CBS 2499 v2.0   23 19
No Yes Pichia membranifaciensv1.0   22 18
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   22 18
No Yes Candida dubliniensis CD36   23 19
No Yes Candida tropicalis MYA-3404   20 17
No Yes Candida parapsilosis   20 17
No Yes Candida albicans SC5314   22 18
No Yes Lodderomyces elongisporus NRRL YB-4239   21 17
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   23 19
No Yes Pichia stipitis CBS 6054   22 18
No Yes Candida guilliermondii ATCC 6260   19 16
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   22 18
No Yes Debaromyces hansenii   23 19
No Yes Wickerhamomyces anomalus   24 19
No Yes Pichia pastoris GS115   23 19
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   19 15
No Yes Yarrowia lipolytica CLIB122   26 22
No Yes Candida lusitaniae ATCC 42720   22 18
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   23 19
No Yes Vanderwaltozyma polyspora DSM 70294   24 19
No Yes Candida glabrata CBS138   22 18
No Yes Kluyveromyces thermotolerans CBS 6340   20 16
No Yes Lachancea kluyveri   21 17
No Yes Kluyveromyces waltii   20 16
No Yes Ashbya gossypii ATCC 10895   21 17
No Yes Zygosaccharomyces rouxii   21 17
No Yes Saccharomyces mikatae MIT   20 17
No Yes Saccharomyces paradoxus MIT   21 17
No Yes Saccharomyces cerevisiae 76 Baker's yeast 22 18
No Yes Saccharomyces bayanus MIT   23 19
No Yes Kluyveromyces lactis   21 17
No Yes Schizosaccharomyces cryophilus OY26 22   27 22
No Yes Schizosaccharomyces octosporus yFS286   26 20
No Yes Schizosaccharomyces japonicus yFS275   27 21
No Yes Schizosaccharomyces pombe Fission yeast 27 21
No Yes Catenaria anguillulae PL171 v1.0   53 46
No Yes Allomyces macrogynus ATCC 38327   109 93
No Yes Spizellomyces punctatus DAOM BR117   65 56
No Yes Dictyostelium discoideum   78 74
No Yes Dictyostelium purpureum   77 73
No Yes Entamoeba dispar 1.2   66 54
No Yes Entamoeba invadens 1.2   103 88
No Yes Entamoeba histolytica 1   66 54
No Yes Selaginella moellendorffii   235 221
No Yes Pinus taeda Loblolly pine 208 191
No Yes Picea abies Norway spruce 124 121
No Yes Eucalyptus grandis v201 Rose gum 316 303
No Yes Theobroma cacao B97-61/B2 v1 Cacao 174 163
No Yes Gossypium raimondii v221   607 558
No Yes Citrus clementina v165   264 254
No Yes Citrus sinensis v154 Sweet orange 315 294
No Yes Thellungiella halophila v173   223 207
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 318 300
No Yes Capsella rubella v183   204 192
No Yes Arabidopsis lyrata Lyrate rockcress 207 196
No Yes Arabidopsis thaliana 10 Thale cress 273 253
No Yes Carica papaya Papaya 144 141
No Yes Medicago truncatula Barrel medic 338 323
No Yes Phaseolus vulgaris v186 French bean 234 221
No Yes Glycine max v109 Soybean 449 425
No Yes Cucumis sativus v122 Cucumber 224 208
No Yes Fragaria vesca Wild strawberry 171 157
No Yes Malus domestica v196 Apple 393 373
No Yes Prunus persica v139 Peach 179 170
No Yes Linum usitatissimum v200 Flax 325 302
No Yes Manihot esculenta v147 Cassava 269 254
No Yes Populus trichocarpa v156 Black cottonwood 306 285
No Yes Vitis vinifera Wine grape 156 148
No Yes Mimulus guttatus v140 Spotted monkey flower 219 208
No Yes Solanum lycopersicum v.2.3 Tomato 212 203
No Yes Solanum tuberosum Potato 256 252
No Yes Actinidia chinensis Hongyang   274 257
No Yes Aquilegia coerulea v195   255 237
No Yes Triticum urartu 22   160 152
No Yes Triticum aestivum 22 Bread wheat 473 453
No Yes Aegilops tauschii 22   165 158
No Yes Brachypodium distachyon Stiff brome 229 215
No Yes Oryza barthii 22 African wild rice 244 234
No Yes Oryza meridionalis 22   226 214
No Yes Oryza glumaepatula 22   270 260
No Yes Oryza glaberrima African rice 168 159
No Yes Oryza punctata 22   264 248
No Yes Oryza nivara 22   260 247
No Yes Oryza brachyantha 22 Malo sina 186 178
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 257 243
No Yes Oryza sativa v193 Rice 256 242
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 226 208
No Yes Panicum virgatum v202 Switchgrass 374 356
No Yes Setaria italica v164 Foxtail millet 223 208
No Yes Zea mays subsp. mays Maize 407 385
No Yes Zea mays v181 Maize 431 407
No Yes Sorghum bicolor Sorghum 182 173
No Yes Musa balbisiana Balbis banana 261 245
No Yes Musa acuminata 22 Wild Malaysian banana 249 236
No Yes Amborella trichopoda 22   111 107
No Yes Physcomitrella patens   170 156
No Yes Coccomyxa subellipsoidea sp. C-169 v2   51 43
No Yes Asterochloris sp. Cgr/DA1pho v1.0   58 52
No Yes Chlorella variabilis sp. NC64A   53 50
No Yes Chlorella vulgaris   48 44
No Yes Volvox carteri f. nagariensis   118 104
No Yes Volvox carteri v199   110 98
No Yes Chlamydomonas reinhardtii 4.0   128 116
No Yes Ostreococcus sp. RCC809   44 38
No Yes Ostreococcus lucimarinus CCE9901   43 39
No Yes Ostreococcus tauri   44 38
No Yes Bathycoccus prasinos   49 44
No Yes Micromonas sp. RCC299   98 85
No Yes Micromonas pusilla CCMP1545 v3.0   138 115
No Yes Cyanidioschyzon merolae strain 10D 22   13 12
No Yes Cyanidioschyzon merolae   13 12
No Yes Porphyridium purpureum 02_2012   76 62
No Yes Thecamonas trahens ATCC 50062   188 169
No Yes Bigelowiella natans CCMP2755 22   399 364
No Yes Giardia lamblia 2.3   30 28
No Yes Cyanophora paradoxa   103 101
No Yes Leishmania mexicana 2.4   68 64
No Yes Leishmania major strain Friedlin   71 66
No Yes Leishmania infantum JPCM5 2.4   70 65
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   71 67
No Yes Trypanosoma vivax   78 73
No Yes Trypanosoma cruzi strain CL Brener   85 76
No Yes Trypanosoma congolense 2.4   94 87
No Yes Trypanosoma brucei gambiense v4.1   91 84
No Yes Trypanosoma brucei TREU927 v4.1   92 84
No Yes Ectocarpus siliculosus   250 211
No Yes Aureococcus anophagefferens   291 254
No Yes Albugo laibachii 22   151 104
No Yes Pythium iwayamai DAOM BR242034 22   224 177
No Yes Pythium arrhenomanes ATCC 12531 22   209 160
No Yes Pythium ultimum v1.7-2   221 165
No Yes Pythium aphanidermatum DAOM BR444 22   208 157
No Yes Pythium irregulare DAOM BR486 22   235 174
No Yes Pythium vexans DAOM BR484 22   204 158
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 201 159
No Yes Phytophthora sojae 1.1   212 170
No Yes Phytophthora infestans T30-4   238 187
No Yes Phytophthora capsici   161 136
No Yes Hyaloperonospora arabidopsidis 22   60 45
No Yes Phaeodactylum tricornutumCCAP 1055/1   72 69
No Yes Fragilariopsis cylindrus   124 123
No Yes Thalassiosira pseudonana CCMP1335   86 81
No Yes Perkinsus marinus ATCC 50983   255 232
No Yes Paramecium tetraurelia   882 768
No Yes Tetrahymena thermophila SB210 1   365 274
No Yes Ichthyophthirius multifiliis strain G5   234 177
No Yes Cryptosporidium hominis   37 35
No Yes Cryptosporidium muris   46 42
No Yes Cryptosporidium parvum Iowa II   45 42
No Yes Neospora caninum   72 63
No Yes Toxoplasma gondii VEG   65 60
No Yes Toxoplasma gondii ME49   66 61
No Yes Toxoplasma gondii GT1   64 60
No Yes Babesia bovis T2Bo   54 50
No Yes Theileria parva   28 26
No Yes Theileria annulata   31 29
No Yes Plasmodium falciparum 3D7   73 70
No Yes Plasmodium vivax SaI-1 7.0   44 40
No Yes Plasmodium knowlesi strain H   43 41
No Yes Plasmodium yoelii ssp. yoelii 1   39 37
No Yes Plasmodium chabaudi   47 42
No Yes Plasmodium berghei ANKA   45 41
No Yes Symbiodinium minutum clade B1 v1.2   1493 1347
No Yes Naegleria gruberi   123 112
No Yes Trichomonas vaginalis   174 149
No Yes Guillardia theta CCMP2712 v1.0   419 390
No Yes Emiliania huxleyi CCMP1516   320 314
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Acaryochloris marina MBIC11017   2 2
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   2 2
No Yes Synechococcus sp. CC9311   3 3
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Microcoleus sp. PCC 7113   4 4
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   2 2
No Yes cyanobacterium UCYN-A   1 1
No Yes Microcystis aeruginosa NIES-843   3 3
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   2 2
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Mycoplasma wenyonii str. Massachusetts   1 1
No Yes Slackia heliotrinireducens DSM 20476   1 1
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Stackebrandtia nassauensis DSM 44728   2 2
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   4 4
No Yes Thermomonospora curvata DSM 43183   3 3
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   10 10
No Yes Streptomyces coelicolor A3(2)   4 4
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   3 3
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   5 5
No Yes Actinosynnema mirum DSM 43827   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Ruminococcus albus 7   3 3
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Bacillus weihenstephanensis KBAB4   2 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus haemolyticus JCSC1435   1 1
No Yes Staphylococcus carnosus subsp. carnosus TM300   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   1 1
No Yes Saprospira grandis str. Lewin   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Krokinobacter sp. 4H-3-7-5   2 2
No Yes Lacinutrix sp. 5H-3-7-4   4 4
No Yes Maribacter sp. HTCC2170   2 2
No Yes Zobellia galactanivorans   3 3
No Yes Cellulophaga algicola DSM 14237   3 3
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Polaribacter sp. MED152   3 3
No Yes Planctomyces brasiliensis DSM 5305   14 12
No Yes Planctomyces limnophilus DSM 3776   6 5
No Yes Rhodopirellula baltica SH 1   9 8
No Yes Pirellula staleyi DSM 6068   13 8
No Yes Coraliomargarita akajimensis DSM 45221   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Turneriella parva DSM 21527   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Terriglobus saanensis SP1PR4   3 1
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Thermodesulfovibrio yellowstonii DSM 11347   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Bdellovibrio bacteriovorus HD100   3 3
No Yes Sulfurospirillum deleyianum DSM 6946   2 2
No Yes Sulfurospirillum barnesii SES-3   3 2
No Yes Arcobacter sp. L   2 2
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Arcobacter butzleri RM4018   1 1
No Yes Campylobacter concisus 13826   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   1 1
No Yes Sulfuricurvum kujiense DSM 16994   2 2
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Wolinella succinogenes DSM 1740   1 1
No Yes Helicobacter cinaedi PAGU611   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Syntrophobacter fumaroxidans MPOB   5 5
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfatibacillum alkenivorans AK-01   2 2
No Yes Desulfobacterium autotrophicum HRM2   3 3
No Yes Desulfovibrio piezophilus   4 4
No Yes Desulfovibrio aespoeensis Aspo-2   2 2
No Yes Lawsonia intracellularis PHE/MN1-00   1 1
No Yes Desulfovibrio magneticus RS-1   5 5
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   2 2
No Yes Desulfovibrio salexigens DSM 2638   5 5
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   18 16
No Yes Geobacter lovleyi SZ   3 3
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Pelobacter propionicus DSM 2379   2 2
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   4 4
No Yes Stigmatella aurantiaca DW4/3-1   2 2
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Azoarcus sp. KH32C   2 2
No Yes Azoarcus sp. BH72   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Dechlorosoma suillum PS   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Laribacter hongkongensis HLHK9   2 1
No Yes beta proteobacterium CB   1 1
No Yes Methylibium petroleiphilum PM1   2 2
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   3 3
No Yes Cupriavidus taiwanensis LMG 19424   4 4
No Yes Cupriavidus metallidurans CH34   4 4
No Yes Cupriavidus necator N-1   3 3
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   2 2
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Ramlibacter tataouinensis TTB310   3 3
No Yes Delftia sp. Cs1-4   3 3
No Yes Delftia acidovorans SPH-1   3 3
No Yes Polaromonas sp. JS666   2 2
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Acidovorax ebreus TPSY   3 3
No Yes Acidovorax sp. KKS102   4 4
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   3 3
No Yes Acidovorax avenae subsp. avenae ATCC 19860   4 4
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella avium 197N   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Nitrosospira multiformis ATCC 25196   3 3
No Yes Nitrosomonas sp. Is79A3   3 2
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Gallionella capsiferriformans ES-2   2 2
No Yes Methylotenera versatilis 301   7 7
No Yes Methylotenera mobilis JLW8   2 2
No Yes Methylovorus sp. MP688   8 8
No Yes Methylovorus glucosetrophus SIP3-4   8 8
No Yes Methylobacillus flagellatus KT   3 3
No Yes Magnetococcus marinus MC-1   2 2
No Yes Parvularcula bermudensis HTCC2503   5 4
No Yes Asticcacaulis excentricus CB 48   8 8
No Yes Brevundimonas subvibrioides ATCC 15264   3 3
No Yes Caulobacter sp. K31   5 5
No Yes Caulobacter crescentus NA1000   4 4
No Yes Caulobacter segnis ATCC 21756   7 6
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Erythrobacter litoralis HTCC2594   4 4
No Yes Sphingopyxis alaskensis RB2256   3 3
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium sp. SYK-6   4 4
No Yes Sphingobium japonicum UT26S   4 4
No Yes Sphingobium chlorophenolicum L-1   5 5
No Yes Sphingomonas sp. MM-1   5 5
No Yes Sphingomonas wittichii RW1   6 6
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   2 2
No Yes Maricaulis maris MCS10   4 4
No Yes Hirschia baltica ATCC 49814   4 4
No Yes Hyphomonas neptunium ATCC 15444   3 3
No Yes Dinoroseobacter shibae DFL 12   5 5
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   3 2
No Yes Jannaschia sp. CCS1   5 5
No Yes Ruegeria sp. TM1040   5 5
No Yes Ruegeria pomeroyi DSS-3   3 3
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   6 6
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   3 3
No Yes Rhodobacter capsulatus SB 1003   3 3
No Yes Rhodospirillum photometricum DSM 122   3 3
No Yes Tistrella mobilis KA081020-065   2 2
No Yes Magnetospirillum magneticum AMB-1   3 3
No Yes Rhodospirillum centenum SW   4 4
No Yes Rhodospirillum rubrum F11   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Polymorphum gilvum SL003B-26A1   2 1
No Yes Micavibrio aeruginosavorus ARL-13   3 3
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Candidatus Pelagibacter sp. IMCC9063   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   4 4
No Yes Methylobacterium sp. 4-46   2 2
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   3 3
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Parvibaculum lavamentivorans DS-1   2 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   3 3
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   6 6
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   2 2
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   2 2
No Yes Mesorhizobium sp. BNC1   3 3
No Yes Mesorhizobium opportunistum WSM2075   4 4
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Methylocella silvestris BL2   2 2
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Pelagibacterium halotolerans B2   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   4 4
No Yes Hyphomicrobium denitrificans ATCC 51888   3 3
No Yes Oligotropha carboxidovorans OM4   2 2
No Yes Rhodopseudomonas palustris BisA53   3 3
No Yes Bradyrhizobium japonicum USDA 110   4 4
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Methylocystis sp. SC2   2 2
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   2 1
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Psychromonas ingrahamii 37   2 2
No Yes Shewanella halifaxensis HAW-EB4   2 2
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Colwellia psychrerythraea 34H   4 4
No Yes Pseudoalteromonas sp. SM9913   12 12
No Yes Pseudoalteromonas atlantica T6c   5 5
No Yes Pseudoalteromonas haloplanktis TAC125   12 12
No Yes Glaciecola sp. 4H-3-7+YE-5   5 5
No Yes Glaciecola nitratireducens FR1064   3 3
No Yes Alteromonas sp. SN2   5 5
No Yes Alteromonas macleodii str. 'Deep ecotype'   4 4
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   5 5
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Halomonas elongata DSM 2581   6 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Pseudoxanthomonas spadix BD-a59   8 8
No Yes Pseudoxanthomonas suwonensis 11-1   6 6
No Yes Stenotrophomonas maltophilia K279a   6 6
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   6 6
No Yes Xanthomonas albilineans GPE PC73   4 4
No Yes Xanthomonas oryzae pv. oryzae PXO99A   5 5
No Yes Xanthomonas campestris pv. campestris str. B100   4 4
No Yes Spiribacter sp. UAH-SP71   1 1
No Yes Allochromatium vinosum DSM 180   2 2
No Yes Thiocystis violascens DSM 198   2 2
No Yes Nitrosococcus watsonii C-113   2 2
No Yes Nitrosococcus halophilus Nc4   6 6
No Yes Nitrosococcus oceani ATCC 19707   2 2
No Yes gamma proteobacterium HdN1   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Francisella noatunensis subsp. orientalis str. Toba 04   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Francisella tularensis subsp. tularensis WY96-3418   1 1
No Yes Francisella novicida U112   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Methanohalobium evestigatum Z-7303   3 3
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Methanobrevibacter sp. AbM4   1 1
No Yes Methanobrevibacter ruminantium M1   3 3
No Yes Methanobrevibacter smithii ATCC 35061   2 2
No Yes Aciduliprofundum boonei T469   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 560 479
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 271 220
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 150 130
No Yes Ascaris suum Victoria/Ghent Pig roundworm 128 112
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 179 151
No Yes Cryptococcus neoformans var. grubii H99   29 25
No Yes Cryptococcus neoformans B-3501A   29 25
No Yes Cryptococcus neoformans JEC21   27 23
No Yes Paracoccidioides brasiliensis Pb01   30 26
No Yes Paracoccidioides brasiliensis Pb03   29 25
No Yes Coccidioides posadasii str. Silveira   29 25
No Yes Coccidioides immitis RMSCC 3703   29 25
No Yes Coccidioides immitis RMSCC 2394   29 25
No Yes Coccidioides immitis H538.4   28 25
No Yes Ajellomyces dermatitidis ER-3   30 26
No Yes Histoplasma capsulatum H143   29 26
No Yes Histoplasma capsulatum H88   30 26
No Yes Histoplasma capsulatum G186AR   29 25
No Yes Aspergillus fumigatus A1163   31 27
No Yes Candida albicans WO-1   22 18
No Yes Saccharomyces cerevisiae UC5   19 15
No Yes Saccharomyces cerevisiae PW5   18 16
No Yes Saccharomyces cerevisiae FL100   9 9
No Yes Saccharomyces cerevisiae CLIB324   7 6
No Yes Saccharomyces cerevisiae CBS7960   13 12
No Yes Saccharomyces cerevisiae YJM269   13 12
No Yes Saccharomyces cerevisiae T7   22 18
No Yes Saccharomyces cerevisiae FostersB   18 16
No Yes Saccharomyces cerevisiae FostersO   15 15
No Yes Saccharomyces cerevisiae VL3   16 16
No Yes Saccharomyces cerevisiae Vin13   16 14
No Yes Saccharomyces cerevisiae LalvinQA23   16 14
No Yes Saccharomyces cerevisiae AWRI796   21 17
No Yes Saccharomyces cerevisiae Sigma1278b   22 18
No Yes Saccharomyces cerevisiae W303   22 18
No Yes Saccharomyces cerevisiae JAY291   22 18
No Yes Saccharomyces cerevisiae AWRI1631   15 13
No Yes Saccharomyces cerevisiae YPS163   10 9
No Yes Saccharomyces cerevisiae M22   11 9
No Yes Saccharomyces cerevisiae T73   8 7
No Yes Saccharomyces cerevisiae CLIB215   12 11
No Yes Saccharomyces cerevisiae Y10   7 6
No Yes Saccharomyces cerevisiae YJM789   22 18
No Yes Saccharomyces cerevisiae YJM789   20 17
No Yes Saccharomyces cerevisiae RM11-1a   21 17
No Yes Saccharomyces cerevisiae RM11-1a   21 17
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 22 18
No Yes Schizosaccharomyces pombe 972h-   27 21
No Yes Batrachochytrium dendrobatidis JEL423   54 47
No Yes Batrachochytrium dendrobatidis JAM81   54 46
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 177 166
No Yes Hordeum vulgare 22 Domesticated barley 288 278
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 206 196
No Yes Trypanosoma brucei Lister 427 v4.1   92 84
No Yes Neospora caninum Nc-Liverpool 6.2   72 63
No Yes Plasmodium falciparum HB3   55 53
No Yes Plasmodium falciparum Dd2   42 40
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   2 2
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   2 2
No Yes Synechococcus sp. CC9605   3 3
No Yes Synechococcus sp. WH 8102   2 2
No Yes Synechococcus sp. WH 7803   2 2
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus str. MIT 9313   2 2
No Yes Prochlorococcus marinus str. MIT 9303   2 2
No Yes Crinalium epipsammum PCC 9333   4 4
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   3 3
No Yes Cyanothece sp. PCC 7424   2 2
No Yes Cyanothece sp. ATCC 51142   4 4
No Yes Cyanothece sp. PCC 8801   2 2
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   5 5
No Yes Mycoplasma ovis str. Michigan   1 1
No Yes Mycoplasma cynos C142   1 1
No Yes Candidatus Mycoplasma haemolamae str. Purdue   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   3 3
No Yes Streptomyces albus J1074   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   5 5
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   5 5
No Yes Streptomyces venezuelae ATCC 10712   3 3
No Yes Streptomyces collinus Tu 365   5 5
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   5 5
No Yes Saccharothrix espanaensis DSM 44229   10 10
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Nocardia brasiliensis ATCC 700358   4 4
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Thermacetogenium phaeum DSM 12270   1 1
No Yes Streptococcus oligofermentans AS 1.3089   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   2 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   1 1
No Yes Staphylococcus pseudintermedius ED99   1 1
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus warneri SG1   1 1
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   1 1
No Yes Staphylococcus aureus M1   2 2
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus 04-02981   1 1
No Yes Staphylococcus aureus RF122   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus 6850   1 1
No Yes Staphylococcus aureus subsp. aureus SA957   1 1
No Yes Staphylococcus aureus subsp. aureus SA40   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   1 1
No Yes Staphylococcus aureus subsp. aureus M013   1 1
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   1 1
No Yes Staphylococcus aureus subsp. aureus VC40   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus LGA251   1 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   1 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Staphylococcus aureus subsp. aureus Mu3   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   1 1
No Yes Staphylococcus aureus subsp. aureus JH9   1 1
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Staphylococcus aureus subsp. aureus MRSA252   1 1
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus N315   1 1
No Yes Staphylococcus aureus subsp. aureus Mu50   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   1 1
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Singulisphaera acidiphila DSM 18658   8 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   2 2
No Yes Bdellovibrio bacteriovorus str. Tiberius   3 3
No Yes Arcobacter butzleri 7h1h   2 1
No Yes Desulfocapsa sulfexigens DSM 10523   2 2
No Yes Lawsonia intracellularis N343   1 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   4 4
No Yes Desulfovibrio vulgaris RCH1   2 2
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   4 4
No Yes Desulfovibrio vulgaris str. Hildenborough   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   5 5
No Yes Desulfovibrio desulfuricans ND132   3 3
No Yes Geobacter sulfurreducens PCA   2 2
No Yes Sorangium cellulosum So0157-2   8 7
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   2 2
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   2 2
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Bordetella parapertussis Bpp5   1 1
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Bordetella bronchiseptica 253   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Nitrosomonas sp. AL212   1 1
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Caulobacter crescentus CB15   4 4
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   2 2
No Yes Zymomonas mobilis subsp. mobilis CP4   2 2
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   2 2
No Yes Zymomonas mobilis subsp. mobilis ZM4   2 2
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   2 2
No Yes Phaeobacter gallaeciensis DSM 26640   3 3
No Yes Leisingera methylohalidivorans DSM 14336   4 4
No Yes Octadecabacter antarcticus 307   2 2
No Yes Octadecabacter arcticus 238   2 2
No Yes Rhodobacter sphaeroides KD131   3 3
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   3 3
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Micavibrio aeruginosavorus EPB   2 2
No Yes Methylobacterium extorquens DM4   2 2
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   2 2
No Yes Sinorhizobium fredii HH103   2 2
No Yes Sinorhizobium meliloti 2011   2 2
No Yes Sinorhizobium meliloti GR4   2 2
No Yes Sinorhizobium meliloti Rm41   4 4
No Yes Sinorhizobium meliloti SM11   2 2
No Yes Sinorhizobium meliloti BL225C   2 2
No Yes Sinorhizobium meliloti 1021   2 2
No Yes Rhizobium etli CFN 42   3 3
No Yes Rhizobium etli bv. mimosae str. Mim1   3 3
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   4 4
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   4 4
No Yes Mesorhizobium australicum WSM2073   3 3
No Yes Hyphomicrobium nitrativorans NL23   6 6
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   3 3
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   3 3
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Glaciecola psychrophila 170   5 5
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   5 4
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   6 5
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   4 4
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   4 4
No Yes Alteromonas macleodii str. 'English Channel 615'   4 4
No Yes Alteromonas macleodii AltDE1   6 5
No Yes Alteromonas macleodii str. 'English Channel 673'   6 5
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   6 5
No Yes Alteromonas macleodii str. 'Black Sea 11'   6 5
No Yes Alteromonas macleodii ATCC 27126   7 6
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Stenotrophomonas maltophilia D457   8 8
No Yes Stenotrophomonas maltophilia JV3   6 6
No Yes Stenotrophomonas maltophilia R551-3   6 6
No Yes Xylella fastidiosa subsp. fastidiosa GB514   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   6 6
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   6 6
No Yes Xanthomonas axonopodis pv. citrumelo F1   6 6
No Yes Xanthomonas axonopodis Xac29-1   6 6
No Yes Xanthomonas oryzae pv. oryzicola BLS256   5 5
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   5 5
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   5 5
No Yes Xanthomonas campestris pv. raphani 756C   5 5
No Yes Xanthomonas campestris pv. campestris str. 8004   5 5
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   5 5
No Yes Thioflavicoccus mobilis 8321   2 2
No Yes Dickeya dadantii 3937   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 1
No Yes Pseudomonas syringae pv. syringae B728a   2 1
No Yes Pseudomonas monteilii SB3101   3 3
No Yes Pseudomonas monteilii SB3078   3 3
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   2 2
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas fluorescens F113   2 1
No Yes Pseudomonas fluorescens R124   2 1
No Yes Pseudomonas fluorescens Pf0-1   3 2
No Yes Pseudomonas resinovorans NBRC 106553   2 2
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Francisella noatunensis subsp. orientalis LADL--07-285A   1 1
No Yes Francisella tularensis subsp. holarctica F92   1 1
No Yes Francisella tularensis subsp. holarctica FTNF002-00   1 1
No Yes Francisella tularensis subsp. holarctica OSU18   1 1
No Yes Francisella tularensis subsp. holarctica LVS   1 1
No Yes Francisella tularensis subsp. holarctica FSC200   1 1
No Yes Francisella tularensis subsp. tularensis TIGB03   1 1
No Yes Francisella tularensis subsp. tularensis TI0902   1 1
No Yes Francisella tularensis subsp. tularensis NE061598   1 1
No Yes Francisella tularensis subsp. tularensis FSC198   1 1
No Yes Francisella tularensis subsp. tularensis SCHU S4   1 1
No Yes Francisella cf. novicida Fx1   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1207 1054
No Yes Homo sapiens (NCBI version) Human 570 466
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 304 261
No Yes Heliconius numata (Incomplete)   34 34
No Yes Loa loa v3.3 (Request) Eye worm 103 90
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 99 93
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 78 68
No Yes Moniliophthora perniciosa FA553 (Genome survey)   18 18
No Yes Encephalitozoon intestinalis (endoparasite)   8 8
No Yes Encephalitozoon cuniculi (endoparasite)   8 8
No Yes Picea sitchensis (Incomplete) Sitka spruce 35 35
No Yes Lotus japonicus (Early assembly)   165 159
No Yes Malus x domestica (Duplicate) Apple 393 373
No Yes Ricinus communis (Early assembly) Castor bean 167 157
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   379 360
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 208 199
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 212 203
No Yes Phoenix dactylifera (Early draft) Date palm 117 113
No Yes Homo sapiens 69_37 Human 327 281
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 285 247
No Yes Gorilla gorilla 69_3.1 Western gorilla 307 262
No Yes Pongo abelii 69_2 Sumatran orangutan 292 249
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 279 240
No Yes Macaca mulatta 69_1 Rhesus monkey 313 274
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 269
No Yes Otolemur garnettii 69_3 Small-eared galago 345 305
No Yes Microcebus murinus 69_1 Gray mouse lemur 239 204
No Yes Rattus norvegicus 69_3.4 Norway rat 310 270
No Yes Mus musculus 69_38 House mouse 311 268
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 221 194
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 268 239
No Yes Cavia porcellus 69_3 Domestic guinea pig 280 244
No Yes Oryctolagus cuniculus 69_2 Rabbit 272 238
No Yes Ochotona princeps 69 American pika 230 202
No Yes Tupaia belangeri 69 Northern tree shrew 206 181
No Yes Sus scrofa 69_10.2 Pig 302 267
No Yes Bos taurus 69_3.1 Cattle 292 251
No Yes Vicugna pacos 69_1 Alpaca 170 146
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 259 223
No Yes Mustela putorius furo 69_1.0 Domestic ferret 308 254
No Yes Ailuropoda melanoleuca 69_1 Giant panda 301 261
No Yes Canis familiaris 69_3.1 Dog 308 264
No Yes Felis catus 69 Domestic cat 221 196
No Yes Equus caballus 69_2 Horse 293 254
No Yes Myotis lucifugus 69_2.0 Little brown bat 283 249
No Yes Pteropus vampyrus 69_1 Large flying fox 271 234
No Yes Sorex araneus 69_1 European shrew 159 142
No Yes Erinaceus europaeus 69 Western European hedgehog 195 171
No Yes Procavia capensis 69_1 Cape rock hyrax 260 228
No Yes Loxodonta africana 69_3 African savanna elephant 296 258
No Yes Echinops telfairi 69 Small Madagascar hedgehog 198 178
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 182 169
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 159 136
No Yes Macropus eugenii 69_1.0 Tammar wallaby 236 209
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 269 231
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 326 258
No Yes Ornithorhynchus anatinus 69_5 Platypus 230 210
No Yes Petromyzon marinus 69_7.0 Sea lamprey 151 124
No Yes Meleagris gallopavo 69_2 Turkey 223 192
No Yes Gallus gallus 69_2 Chicken 216 187
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 232 203
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 255 223
No Yes Anolis carolinensis 69_2.0 Green anole 255 220
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 251 214
No Yes Latimeria chalumnae 69_1 Coelacanth 262 229
No Yes Gadus morhua 69_1 Atlantic cod 318 283
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 311 281
No Yes Takifugu rubripes 69_4 Torafugu 310 274
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 328 289
No Yes Oryzias latipes 69_1 Japanese medaka 296 262
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 330 290
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 352 309
No Yes Danio rerio 69_9 Zebrafish 373 321
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 136 123
No Yes Ciona intestinalis 69 Vase tunicate 180 157
No Yes Drosophila melanogaster 69_5 Fruit fly 132 115
No Yes Caenorhabditis elegans 69_215 Roundworm 121 105
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 22 18
No Yes Arabidopsis thaliana 10 Thale cress 206 192
No Yes 1_050719N (meta-genome)   1 1
No Yes 1_Upper_euphotic (meta-genome)   17 17
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   9 9
No Yes 4_050719Q (meta-genome)   6 6
No Yes 4_Deep_abyss (meta-genome)   5 5
No Yes 5_050719P (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   11 11
No Yes 7_Oxygen_minimum_layer (meta-genome)   6 6
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   21 20
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   18 17
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Combined (meta-genome)   17 17
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   8 8
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   10 10
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   51 51
No Yes Dump top (Dump top) (meta-genome)   26 26
No Yes Endophytic microbiome from Rice (meta-genome)   18 18
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   9 9
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   15 14
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   17 17
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   17 17
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   6 5
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   10 10
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   14 14
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   81 79
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   24 24
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   15 14
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   18 17
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   23 23
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   13 13
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   13 13
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes NCBI 2017_08 genome   261704 224365
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   25 25
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   2109 1909
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   17 17
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   10 10
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   19 19
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   5 5
No Yes Sludge/US, Jazz Assembly (meta-genome)   7 7
No Yes Sludge/US, Phrap Assembly (meta-genome)   11 11
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   32 31
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   44 44
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   31 31
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   15 15
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   21 21
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   40 40
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   36 36
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   6 6
No Yes STRING v9.0.5 (STRING)   16565 14561
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   4 4
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   49 49
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   6 6
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   206497 182476
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   12 10
No Yes Global Ocean Sampling Expedition (GOS)   2623 2530
No Yes NCBI plasmid sequences (Plasmids)   53 53
No Yes NCBI viral sequences (Viral)   15 15
No Yes PDB chains (SCOP 1.75) (PDB)   217 215
No Yes Protein Data Bank (all PDB sequenc)   2302 2268
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   5819 5819
No Yes TargetDB (Targets)   814 734
No Yes UniProt viral sequences (Viral)   30 30

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