SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Scaffolding protein gpD of bacteriophage procapsid superfamily domain assignments
in
Streptococcus sp. I-P16

Network of domain occurrence in all genomes



No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a Scaffolding protein gpD of bacteriophage procapsid domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   1258 1258
No Yes Pinus taeda Loblolly pine 1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes NCBI 2017_08 genome   803 803
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   248 248
No Yes Global Ocean Sampling Expedition (GOS)   76 76
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   14 14
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   33 33
No Yes UniProt viral sequences (Viral)   66 66

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]