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  Home > Genomes > Xanthomonas campestris pv. campestris str. ATCC 33913 > LigA subunit of an aromatic-ring-opening dioxygenase LigAB domains


LigA subunit of an aromatic-ring-opening dioxygenase LigAB superfamily domain assignments
in
Xanthomonas campestris pv. campestris str. ATCC 33913

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Xanthomonas campestris pv. campestris str. ATCC 33913 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|21230279|ref|NP_636196.1|   9.68e-47   1-117   LigA subunit of an aromatic-ring-opening dioxygenase LigAB  

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Select to display   Genome       Domains   Proteins
No Yes ALL   8536 8536
No Yes Capitella sp. I   1 1
No Yes Modestobacter marinus   1 1
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Azoarcus sp. BH72   2 2
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   2 2
No Yes Burkholderia phymatum STM815   2 2
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Verminephrobacter eiseniae EF01-2   2 2
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   5 5
No Yes Delftia acidovorans SPH-1   4 4
No Yes Polaromonas naphthalenivorans CJ2   2 2
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax sp. KKS102   3 3
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium sp. SYK-6   4 4
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Polymorphum gilvum SL003B-26A1   2 2
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium sp. ORS 278   3 3
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   3 3
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Chromohalobacter salexigens DSM 3043   2 2
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas putida F1   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   2 2
No Yes Pyrobaculum oguniense TE7   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   2 2
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Bradyrhizobium sp. BTAi1   3 3
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Vibrio sp. EJY3   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas putida H8234   2 2
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes 2_050719S (meta-genome)   3 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Combined (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   20 20
No Yes Dump top (Dump top) (meta-genome)   21 21
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   3 3
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   5790 5790
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   8 8
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   8 8
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   13 13
No Yes STRING v9.0.5 (STRING)   83 83
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   10 10
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   2001 2001
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   92 92
No Yes NCBI plasmid sequences (Plasmids)   28 28
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   22 22
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   30 30

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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