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Alginate lyase A1-III family domain assignments
in
all bacterial and archaeal genomes

Assignment details

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9 selected genomes have 10 significant domains in 10 proteins.


Terriglobus saanensis SP1PR4 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|320105503|ref|YP_004181093.1|   1.19e-41   0.0000674   122-362   1qaz A:  
gi|320106025|ref|YP_004181615.1|   3.39e-36   0.00000124   79-334   1qaz A:  
 
Weak hits:
gi|320105575|ref|YP_004181165.1|   2.75e-41   0.031   69-390   1qaz A:  
gi|320106908|ref|YP_004182498.1|   2.84e-45   0.011   60-387   1qaz A:  

Stenotrophomonas maltophilia K279a has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|190573474|ref|YP_001971319.1|   6.23e-42   0.0000899   21-320   1qaz A:  
 
Weak hits:
gi|190574528|ref|YP_001972373.1|   1.65e-45   0.0095   79-318   1qaz A:  

Pseudomonas syringae pv. tomato str. DC3000 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|28868447|ref|NP_791066.1|   7.51e-67   0.0000933   22-363   1qaz A:  
 
Weak hits:
gi|28868119|ref|NP_790738.1|   1.1e-19   0.017   19-127   1qaz A:  

Pseudomonas sp. VLB120 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|557221559|ref|YP_008761774.1|   2.75e-62   0.0001   21-359   1qaz A:  
 
Weak hits:
gi|557221179|ref|YP_008761394.1|   0.0604   0.039   177-242   1qaz A:  
gi|557223799|ref|YP_008764014.1|   1.37e-34   0.00097   31-335   1qaz A:  

Stenotrophomonas maltophilia D457 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386717723|ref|YP_006184049.1|   2.56e-42   0.0000866   21-317   1qaz A:  

Stenotrophomonas maltophilia JV3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|344206643|ref|YP_004791784.1|   3.94e-41   0.0000851   25-321   1qaz A:  

Pseudomonas syringae pv. phaseolicola 1448A has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|71737032|ref|YP_273379.1|   1.1e-68   0.0000954   22-363   1qaz A:  

Pseudomonas syringae pv. syringae B728a has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|66044309|ref|YP_234150.1|   7.78e-68   0.0000866   22-363   1qaz A:  

Pseudomonas mendocina NK-01 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|330501989|ref|YP_004378858.1|   3.66e-58   0.0000975   43-354   1qaz A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   922 922
No Yes Phytophthora capsici   1 1
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes NCBI 2017_08 genome   610 610
No Yes STRING v9.0.5 (STRING)   4 4
No Yes Uniprot 2018_03 genome   235 235
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   44 44

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