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Ras GEF superfamily domain assignments
in
Coniophora puteana

Assignment details

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Coniophora puteana has 9 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Conpu1|115299|estExt_Genewise1Plus.C_1_t40150   8.89e-59   411-534,625-850   Ras GEF  
jgi|Conpu1|124281|estExt_Genewise1Plus.C_6_t20245   3.66e-102   824-1242   Ras GEF  
jgi|Conpu1|129909|estExt_Genewise1Plus.C_13_t10156   6.67e-49   856-999,1791-1960,1995-2024,2060-2116   Ras GEF  
jgi|Conpu1|143966|estExt_fgenesh1_pg.C_6_t10108   2.48e-103   775-1211   Ras GEF  
jgi|Conpu1|143991|estExt_fgenesh1_pg.C_6_t10139   6.15e-45   161-579   Ras GEF  
jgi|Conpu1|149131|gm1.1122_g   2.88e-82   342-737   Ras GEF  
jgi|Conpu1|165479|estExt_Genemark1.C_6_t10421   7.19e-105   958-1374   Ras GEF  
jgi|Conpu1|166090|estExt_Genemark1.C_7_t10452   0.0000000000000824   1563-1793,1848-1891   Ras GEF  
  0.0000111   1156-1206   Ras GEF  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57283 57283
No Yes Homo sapiens 76_38 Human 169 169
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 31 31
No Yes Gorilla gorilla 76_3.1 Western gorilla 38 38
No Yes Pongo abelii 76_2 Sumatran orangutan 30 30
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 31 31
No Yes Papio anubis 76 Olive baboon 46 46
No Yes Macaca mulatta 76_1 Rhesus monkey 97 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 90 89
No Yes Otolemur garnettii 76_3 Small-eared galago 31 31
No Yes Microcebus murinus 76_1 Gray mouse lemur 29 24
No Yes Rattus norvegicus 76_5.0 Norway rat 58 58
No Yes Mus musculus 76_38 House mouse 113 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 40 31
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 34 34
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 30 29
No Yes Cavia porcellus 76_3 Domestic guinea pig 44 44
No Yes Oryctolagus cuniculus 76_2 Rabbit 48 45
No Yes Ochotona princeps 76 American pika 33 28
No Yes Tupaia belangeri 76 Northern tree shrew 54 46
No Yes Sus scrofa 76_10.2 Pig 40 40
No Yes Bos taurus 76_3.1 Cattle 32 31
No Yes Ovis aries 76_3.1 Sheep 40 39
No Yes Vicugna pacos 76_1 Alpaca 23 21
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 31 29
No Yes Mustela putorius furo 76_1.0 Domestic ferret 38 38
No Yes Ailuropoda melanoleuca 76_1 Giant panda 41 41
No Yes Canis familiaris 76_3.1 Dog 64 64
No Yes Felis catus 76_6.2 Domestic cat 33 33
No Yes Equus caballus 76_2 Horse 40 40
No Yes Myotis lucifugus 76_2.0 Little brown bat 32 32
No Yes Pteropus vampyrus 76_1 Large flying fox 34 29
No Yes Sorex araneus 76_1 European shrew 27 23
No Yes Erinaceus europaeus 76 Western European hedgehog 27 22
No Yes Procavia capensis 76_1 Cape rock hyrax 32 29
No Yes Loxodonta africana 76_3 African savanna elephant 47 47
No Yes Echinops telfairi 76 Small Madagascar hedgehog 32 28
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 170 156
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 26 22
No Yes Macropus eugenii 76_1.0 Tammar wallaby 33 29
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 38 38
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 27 27
No Yes Ornithorhynchus anatinus 76_5 Platypus 34 34
No Yes Saccoglossus kowalevskii v3.0   26 26
No Yes Petromyzon marinus 76_7.0 Sea lamprey 8 8
No Yes Meleagris gallopavo 76_2 Turkey 25 25
No Yes Gallus gallus 76_4 Chicken 23 23
No Yes Anas platyrhynchos 76_1.0 Mallard 23 23
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 26 26
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 25 25
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 29 29
No Yes Anolis carolinensis 76_2.0 Green anole 30 30
No Yes Xenopus laevis African clawed frog 25 25
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 33 33
No Yes Latimeria chalumnae 76_1 Coelacanth 35 34
No Yes Lepisosteus oculatus 76 Spotted gar 40 40
No Yes Gadus morhua 76_1 Atlantic cod 34 34
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 43 43
No Yes Takifugu rubripes 76_4 Torafugu 125 125
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 45 45
No Yes Oryzias latipes 76_1 Japanese medaka 47 47
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 33 33
No Yes Poecilia formosa 76 Amazon molly 35 35
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 53 53
No Yes Astyanax mexicanus 76 Mexican tetra 40 40
No Yes Danio rerio 76_9 Zebrafish 60 60
No Yes Oikopleura dioica   9 9
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 20 20
No Yes Ciona intestinalis 76 Vase tunicate 12 12
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 20 19
No Yes Adineta vaga   47 46
No Yes Octopus bimaculoides 280   19 19
No Yes Crassostrea gigas 22 Pacific oyster 12 12
No Yes Lottia gigantea Owl limpet 14 14
No Yes Helobdella robusta   17 17
No Yes Capitella sp. I   13 13
No Yes Danaus plexippus OGS1.0 Monarch butterfly 8 8
No Yes Heliconius melpomene Postman butterfly 12 10
No Yes Bombyx mori Domestic silkworm 11 11
No Yes Nasonia vitripennis Jewel wasp 7 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 26 26
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 11
No Yes Linepithema humile v1.1 Argentine ant 9 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 9 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 10 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 10 9
No Yes Atta cephalotes v1.1   11 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 15 15
No Yes Lucilia cuprina Australian sheep blowfly 8 8
No Yes Drosophila grimshawi 1.3   11 11
No Yes Drosophila willistoni 1.3   10 10
No Yes Drosophila pseudoobscura 2.13   10 10
No Yes Drosophila persimilis 1.3   10 10
No Yes Drosophila suzukii   9 9
No Yes Drosophila yakuba 1.3   11 11
No Yes Drosophila simulans 1.3   12 12
No Yes Drosophila sechellia 1.3   10 10
No Yes Drosophila melanogaster 76_5 Fruit fly 33 33
No Yes Drosophila erecta 1.3   10 10
No Yes Drosophila ananassae 1.3   10 10
No Yes Drosophila virilis 1.2   11 11
No Yes Drosophila mojavensis 1.3   10 10
No Yes Megaselia scalaris 22   4 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 12 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 13 13
No Yes Anopheles darlingi 22 American malaria mosquito 10 9
No Yes Anopheles gambiae 49_3j African malaria mosquito 10 10
No Yes Tribolium castaneum 3.0 Red flour beetle 12 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 9 9
No Yes Acyrthosiphon pisum Pea aphid 10 10
No Yes Rhodnius prolixus 22   11 11
No Yes Daphnia pulex Common water flea 11 11
No Yes Strigamia maritima 22   11 11
No Yes Sarcoptes scabiei   10 10
No Yes Tetranychus urticae Two-spotted spider mite 9 9
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Pristionchus pacificus   8 8
No Yes Meloidogyne incognita Southern root-knot nematode 6 5
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   8 8
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 10 10
No Yes Caenorhabditis japonica   9 9
No Yes Caenorhabditis brenneri   9 9
No Yes Caenorhabditis remanei   9 9
No Yes Caenorhabditis elegans 76_235 Roundworm 25 25
No Yes Caenorhabditis briggsae 2   7 7
No Yes Trichinella spiralis 22   13 13
No Yes Hymenolepis microstoma   9 6
No Yes Echinococcus multilocularis   11 8
No Yes Echinococcus granulosus   11 8
No Yes Taenia solium Pork tapeworm 12 9
No Yes Schistosoma mansoni   15 11
No Yes Mnemiopsis leidyi Sea walnut 15 14
No Yes Thelohanellus kitauei   4 4
No Yes Acropora digitifera v1.0   15 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 19 19
No Yes Hydra vulgaris   11 11
No Yes Amphimedon queenslandica   27 26
No Yes Trichoplax adhaerens   12 12
No Yes Proterospongia sp. ATCC 50818   15 15
No Yes Monosiga brevicollis   14 14
No Yes Sphaeroforma arctica JP610   31 31
No Yes Capsaspora owczarzaki ATCC 30864   30 30
No Yes Conidiobolus coronatus NRRL28638 v1.0   13 13
No Yes Mortierella verticillata NRRL 6337   17 16
No Yes Phycomyces blakesleeanus   21 20
No Yes Rhizopus oryzae RA 99-880   33 32
No Yes Mucor circinelloides   19 19
No Yes Rhizomucor miehei CAU432   18 17
No Yes Malassezia globosa CBS 7966   10 8
No Yes Sporisorium reilianum 22   6 5
No Yes Ustilago maydis   6 5
No Yes Mixia osmundae IAM 14324 v1.0   4 4
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   4 4
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   4 4
No Yes Melampsora laricis-populina   6 6
No Yes Rhodotorula graminis WP1 v1.0   4 4
No Yes Sporobolomyces roseus IAM 13481   3 3
No Yes Microbotryum violaceum 22   7 6
No Yes Wallemia sebi v1.0   6 5
No Yes Sphaerobolus stellatus v1.0   14 13
No Yes Piloderma croceum F 1598 v1.0   14 13
No Yes Serpula lacrymans var. lacrymans S7.9   7 7
No Yes Coniophora puteana   9 8
No Yes Hydnomerulius pinastri v2.0   9 8
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   9 8
No Yes Pisolithus microcarpus 441 v1.0   8 7
No Yes Pisolithus tinctorius Marx 270 v1.0   8 7
No Yes Scleroderma citrinum Foug A v1.0   8 7
No Yes Coprinopsis cinerea okayama7 130 v3   12 11
No Yes Pleurotus ostreatus Oyster mushroom 7 7
No Yes Amanita thiersii Skay4041 v1.0   8 7
No Yes Amanita muscaria Koide v1.0 Fly agaric 7 6
No Yes Galerina marginata v1.0   11 10
No Yes Hebeloma cylindrosporum h7 v2.0   10 9
No Yes Laccaria bicolor S238N-H82   6 6
No Yes Agaricus bisporus var. bisporus   8 7
No Yes Schizophyllum commune   6 6
No Yes Stereum hirsutum FP-91666 SS1 v1.0   10 9
No Yes Heterobasidion annosum   10 9
No Yes Gloeophyllum trabeumv1.0   10 9
No Yes Punctularia strigosozonata v1.0   13 12
No Yes Sebacina vermifera MAFF 305830 v1.0   8 7
No Yes Fomitiporia mediterranea v1.0   10 9
No Yes Tulasnella calospora AL13/4D v1.0   9 8
No Yes Postia placenta   11 10
No Yes Wolfiporia cocos MD-104 SS10 v1.0   8 7
No Yes Fomitopsis pinicolav1.0   8 7
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   8 7
No Yes Phanerochaete chrysosporium RP-78 2.1   8 7
No Yes Dichomitus squalens   8 7
No Yes Trametes versicolor v1.0   7 6
No Yes Tremella mesenterica Witches' butter 3 3
No Yes Daldinia eschscholzii EC12 v1.0   3 3
No Yes Apiospora montagnei NRRL 25634 v1.0   4 4
No Yes Magnaporthe poae ATCC 64411 22   4 4
No Yes Magnaporthe grisea 70-15   4 4
No Yes Podospora anserina   4 4
No Yes Sporotrichum thermophile ATCC 42464   4 4
No Yes Thielavia terrestris NRRL 8126   4 4
No Yes Chaetomium globosum CBS 148.51   4 4
No Yes Neurospora tetrasperma   4 4
No Yes Neurospora discreta FGSC 8579   4 4
No Yes Neurospora crassa OR74A   4 4
No Yes Cryphonectria parasitica Chestnut blight fungus 4 4
No Yes Verticillium albo-atrum VaMs.102   3 3
No Yes Verticillium dahliae VdLs.17   3 3
No Yes Acremonium alcalophilumv 1.0   4 4
No Yes Glomerella graminicola 22   4 4
No Yes Fusarium graminearum   4 4
No Yes Nectria haematococca mpVI   4 4
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 4
No Yes Fusarium verticillioides 7600   5 5
No Yes Trichoderma asperellum CBS 433.97 v1.0   4 4
No Yes Trichoderma atroviride   3 3
No Yes Trichoderma citrinoviride v1.0   4 4
No Yes Trichoderma reesei 1.2   4 4
No Yes Trichoderma virens Gv29-8   4 4
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   4 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   4 4
No Yes Amorphotheca resinae v1.0 Creosote fungus 4 4
No Yes Botrytis cinerea B05.10   5 5
No Yes Sclerotinia sclerotiorum   4 4
No Yes Blumeria graminis 22   4 4
No Yes Didymella exigua CBS 183.55 v1.0   4 4
No Yes Leptosphaeria maculans 22   4 4
No Yes Setosphaeria turcica v1.0   4 4
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   4 4
No Yes Cochliobolus victoriae FI3 v1.0   4 4
No Yes Cochliobolus carbonum 26-R-13 v1.0   4 4
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 4 4
No Yes Alternaria brassicicola   3 3
No Yes Cochliobolus lunatus m118 v2.0   4 4
No Yes Pyrenophora teres f. teres 22   4 4
No Yes Pyrenophora tritici-repentis   4 4
No Yes Stagonospora nodorum   4 4
No Yes Mycosphaerella graminicola IPO323   4 4
No Yes Zasmidium cellare ATCC 36951 v1.0   4 4
No Yes Dothistroma septosporum   4 4
No Yes Septoria musiva v1.0   4 4
No Yes Mycosphaerella fijiensis CIRAD86   3 3
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Paracoccidioides brasiliensis Pb18   4 4
No Yes Coccidioides posadasii RMSCC 3488   5 5
No Yes Coccidioides immitis RS   6 6
No Yes Ajellomyces dermatitidis SLH14081   7 7
No Yes Histoplasma capsulatum class NAmI strain WU24   7 7
No Yes Microsporum canis CBS 113480   6 5
No Yes Trichophyton equinum CBS 127.97   5 5
No Yes Trichophyton verrucosum HKI 0517   4 4
No Yes Arthroderma benhamiae CBS 112371   5 5
No Yes Trichophyton tonsurans CBS 112818   6 5
No Yes Trichophyton rubrum CBS 118892   5 5
No Yes Uncinocarpus reesii 1704   5 5
No Yes Aspergillus zonatus v1.0   7 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   9 9
No Yes Penicillium chrysogenum v1.0   7 7
No Yes Aspergillus acidus v1.0   7 7
No Yes Aspergillus fumigatus Af293   4 4
No Yes Aspergillus brasiliensis v1.0   6 6
No Yes Aspergillus nidulans FGSC A4   6 6
No Yes Aspergillus sydowii v1.0   8 8
No Yes Aspergillus versicolor v1.0   7 7
No Yes Aspergillus glaucus   6 6
No Yes Aspergillus carbonarius ITEM 5010   5 5
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   6 6
No Yes Aspergillus tubingensis v1.0   6 6
No Yes Aspergillus wentii v1.0   6 6
No Yes Aspergillus oryzae RIB40   7 7
No Yes Aspergillus niger 22   7 7
No Yes Aspergillus niger ATCC 1015   5 5
No Yes Aspergillus flavus NRRL3357   6 6
No Yes Aspergillus clavatus NRRL 1   5 5
No Yes Penicillium marneffei ATCC 18224   6 6
No Yes Tuber melanosporum Mel28 22   5 5
No Yes Tuber melanosporum Vittad Perigord truffle 5 5
No Yes Hansenula polymorpha v2.0   6 4
No Yes Dekkera bruxellensis CBS 2499 v2.0   5 4
No Yes Pichia membranifaciensv1.0   5 4
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   5 4
No Yes Candida dubliniensis CD36   5 4
No Yes Candida tropicalis MYA-3404   5 4
No Yes Candida parapsilosis   5 4
No Yes Candida albicans SC5314   6 5
No Yes Lodderomyces elongisporus NRRL YB-4239   6 4
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   5 4
No Yes Pichia stipitis CBS 6054   5 4
No Yes Candida guilliermondii ATCC 6260   5 4
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   5 4
No Yes Debaromyces hansenii   5 4
No Yes Wickerhamomyces anomalus   7 5
No Yes Pichia pastoris GS115   6 4
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   3 3
No Yes Yarrowia lipolytica CLIB122   5 4
No Yes Candida lusitaniae ATCC 42720   6 4
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   6 4
No Yes Vanderwaltozyma polyspora DSM 70294   6 5
No Yes Candida glabrata CBS138   6 5
No Yes Kluyveromyces thermotolerans CBS 6340   5 4
No Yes Lachancea kluyveri   4 3
No Yes Kluyveromyces waltii   5 4
No Yes Ashbya gossypii ATCC 10895   5 4
No Yes Zygosaccharomyces rouxii   5 4
No Yes Saccharomyces mikatae MIT   6 5
No Yes Saccharomyces paradoxus MIT   7 6
No Yes Saccharomyces cerevisiae 76 Baker's yeast 5 4
No Yes Saccharomyces bayanus MIT   8 7
No Yes Kluyveromyces lactis   5 4
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces octosporus yFS286   2 2
No Yes Schizosaccharomyces japonicus yFS275   2 2
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   10 10
No Yes Allomyces macrogynus ATCC 38327   25 25
No Yes Spizellomyces punctatus DAOM BR117   15 15
No Yes Dictyostelium discoideum   29 29
No Yes Dictyostelium purpureum   30 30
No Yes Entamoeba dispar 1.2   44 44
No Yes Entamoeba invadens 1.2   64 64
No Yes Entamoeba histolytica 1   45 45
No Yes Thecamonas trahens ATCC 50062   69 64
No Yes Bigelowiella natans CCMP2755 22   7 7
No Yes Trypanosoma cruzi strain CL Brener   4 4
No Yes Albugo laibachii 22   4 4
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   5 5
No Yes Pythium ultimum v1.7-2   4 4
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   4 4
No Yes Pythium vexans DAOM BR484 22   4 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 4 4
No Yes Phytophthora sojae 1.1   4 4
No Yes Phytophthora infestans T30-4   4 4
No Yes Phytophthora capsici   4 4
No Yes Hyaloperonospora arabidopsidis 22   3 3
No Yes Paramecium tetraurelia   5 5
No Yes Tetrahymena thermophila SB210 1   3 3
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   28 28
No Yes Trichomonas vaginalis   20 20
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Waddlia chondrophila WSU 86-1044   3 3
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Parachlamydia acanthamoebae UV-7   1 1
No Yes Legionella longbeachae NSW150   2 2
No Yes Legionella pneumophila str. Corby   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 47 47
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 28 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 12 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 10
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 16 16
No Yes Cryptococcus neoformans var. grubii H99   3 3
No Yes Cryptococcus neoformans B-3501A   3 3
No Yes Cryptococcus neoformans JEC21   3 3
No Yes Paracoccidioides brasiliensis Pb01   4 4
No Yes Paracoccidioides brasiliensis Pb03   4 4
No Yes Coccidioides posadasii str. Silveira   5 5
No Yes Coccidioides immitis RMSCC 3703   5 5
No Yes Coccidioides immitis RMSCC 2394   5 5
No Yes Coccidioides immitis H538.4   5 5
No Yes Ajellomyces dermatitidis ER-3   5 5
No Yes Histoplasma capsulatum H143   5 5
No Yes Histoplasma capsulatum H88   4 4
No Yes Histoplasma capsulatum G186AR   4 4
No Yes Aspergillus fumigatus A1163   4 4
No Yes Candida albicans WO-1   6 5
No Yes Saccharomyces cerevisiae UC5   3 2
No Yes Saccharomyces cerevisiae PW5   4 3
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB324   3 2
No Yes Saccharomyces cerevisiae CBS7960   5 4
No Yes Saccharomyces cerevisiae YJM269   5 4
No Yes Saccharomyces cerevisiae T7   4 3
No Yes Saccharomyces cerevisiae FostersB   4 4
No Yes Saccharomyces cerevisiae FostersO   4 4
No Yes Saccharomyces cerevisiae Vin13   2 2
No Yes Saccharomyces cerevisiae LalvinQA23   3 3
No Yes Saccharomyces cerevisiae AWRI796   3 3
No Yes Saccharomyces cerevisiae Sigma1278b   5 4
No Yes Saccharomyces cerevisiae W303   4 3
No Yes Saccharomyces cerevisiae JAY291   4 3
No Yes Saccharomyces cerevisiae AWRI1631   4 3
No Yes Saccharomyces cerevisiae YPS163   3 3
No Yes Saccharomyces cerevisiae M22   1 1
No Yes Saccharomyces cerevisiae CLIB215   5 4
No Yes Saccharomyces cerevisiae Y10   2 2
No Yes Saccharomyces cerevisiae YJM789   6 5
No Yes Saccharomyces cerevisiae YJM789   5 4
No Yes Saccharomyces cerevisiae RM11-1a   5 4
No Yes Saccharomyces cerevisiae RM11-1a   5 4
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 6 5
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   14 14
No Yes Batrachochytrium dendrobatidis JAM81   9 9
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   2 2
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 170 170
No Yes Homo sapiens (NCBI version) Human 63 63
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 42 42
No Yes Loa loa v3.3 (Request) Eye worm 10 10
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 11 11
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 8 8
No Yes Moniliophthora perniciosa FA553 (Genome survey)   6 6
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Homo sapiens 69_37 Human 35 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 30 30
No Yes Gorilla gorilla 69_3.1 Western gorilla 29 29
No Yes Pongo abelii 69_2 Sumatran orangutan 29 29
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 29 29
No Yes Macaca mulatta 69_1 Rhesus monkey 43 43
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 30 30
No Yes Otolemur garnettii 69_3 Small-eared galago 29 29
No Yes Microcebus murinus 69_1 Gray mouse lemur 29 24
No Yes Rattus norvegicus 69_3.4 Norway rat 46 46
No Yes Mus musculus 69_38 House mouse 44 44
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 40 31
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 31 31
No Yes Cavia porcellus 69_3 Domestic guinea pig 39 39
No Yes Oryctolagus cuniculus 69_2 Rabbit 45 44
No Yes Ochotona princeps 69 American pika 33 28
No Yes Tupaia belangeri 69 Northern tree shrew 54 46
No Yes Sus scrofa 69_10.2 Pig 38 38
No Yes Bos taurus 69_3.1 Cattle 30 29
No Yes Vicugna pacos 69_1 Alpaca 23 21
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 31 29
No Yes Mustela putorius furo 69_1.0 Domestic ferret 35 35
No Yes Ailuropoda melanoleuca 69_1 Giant panda 32 32
No Yes Canis familiaris 69_3.1 Dog 46 46
No Yes Felis catus 69 Domestic cat 34 25
No Yes Equus caballus 69_2 Horse 30 30
No Yes Myotis lucifugus 69_2.0 Little brown bat 31 31
No Yes Pteropus vampyrus 69_1 Large flying fox 34 29
No Yes Sorex araneus 69_1 European shrew 27 23
No Yes Erinaceus europaeus 69 Western European hedgehog 27 22
No Yes Procavia capensis 69_1 Cape rock hyrax 32 29
No Yes Loxodonta africana 69_3 African savanna elephant 36 36
No Yes Echinops telfairi 69 Small Madagascar hedgehog 32 28
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 52 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 26 22
No Yes Macropus eugenii 69_1.0 Tammar wallaby 33 29
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 29 29
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 27 27
No Yes Ornithorhynchus anatinus 69_5 Platypus 29 29
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 8
No Yes Meleagris gallopavo 69_2 Turkey 24 24
No Yes Gallus gallus 69_2 Chicken 22 22
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 26 26
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 26 26
No Yes Anolis carolinensis 69_2.0 Green anole 28 28
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 26 26
No Yes Latimeria chalumnae 69_1 Coelacanth 30 29
No Yes Gadus morhua 69_1 Atlantic cod 34 34
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 34 34
No Yes Takifugu rubripes 69_4 Torafugu 33 33
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 36 36
No Yes Oryzias latipes 69_1 Japanese medaka 33 33
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 33 33
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 37 37
No Yes Danio rerio 69_9 Zebrafish 35 35
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 9 9
No Yes Ciona intestinalis 69 Vase tunicate 10 10
No Yes Drosophila melanogaster 69_5 Fruit fly 10 10
No Yes Caenorhabditis elegans 69_215 Roundworm 8 8
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 5 4
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   25851 25638
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   225 225
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1451 1411
No Yes Uniprot 2018_03 genome   17240 16804
No Yes Global Ocean Sampling Expedition (GOS)   10 10
No Yes NCBI viral sequences (Viral)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   75 75
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   119 119
No Yes TargetDB (Targets)   43 43

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