SUPERFAMILY 1.75 HMM library and genome assignments server

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P1 nuclease family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   1977 1977
No Yes Adineta vaga   4 4
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   3 3
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   3 3
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 2
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   7 7
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   2 2
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   2 2
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   3 3
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   3 3
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   3 3
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   2 2
No Yes Didymella exigua CBS 183.55 v1.0   2 2
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   2 2
No Yes Pyrenophora tritici-repentis   2 2
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   3 3
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Catenaria anguillulae PL171 v1.0   5 5
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Pinus taeda Loblolly pine 2 2
No Yes Picea abies Norway spruce 3 3
No Yes Gossypium raimondii v221   9 9
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Medicago truncatula Barrel medic 8 8
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 3 3
No Yes Cucumis sativus v122 Cucumber 3 3
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   6 6
No Yes Triticum aestivum 22 Bread wheat 7 7
No Yes Aegilops tauschii 22   5 5
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   4 4
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   3 3
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 3 3
No Yes Oryza sativa v193 Rice 4 4
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 8 8
No Yes Setaria italica v164 Foxtail millet 4 4
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 4 4
No Yes Sorghum bicolor Sorghum 4 4
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   2 2
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Batrachochytrium dendrobatidis JEL423   4 4
No Yes Batrachochytrium dendrobatidis JAM81   4 4
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   463 463
No Yes STRING v9.0.5 (STRING)   42 42
No Yes Uniprot 2018_03 genome   984 984
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   23 23

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