SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Fibronectin type III family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 172 significant domains in 117 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1a21A   3.58e-34   0.0000035   90-209   1a21 A:107-208  
  8.15e-26   0.0000419   5-111   1a21 A:4-106  
1a22B   2.55e-35   0.000000853   32-130   1axi B:32-130  
  6.98e-20   0.00000299   131-234   1axi B:131-236  
1axiB   3.32e-34   0.000000697   32-130   1axi B:32-130  
  6.85e-20   0.00000299   131-234   1axi B:131-236  
1bj8A   2.69e-26   0.00000499   4-99   1bqu A:100-214  
1bp3B   8.78e-36   0.00000182   6-102   1bp3 B:202-300  
  3.79e-22   0.00000158   101-203   1bp3 B:301-404  
1bpvA   8.29e-51   0.0000257   10-105   1bpv A:  
1bquA   1.88e-27   0.00000197   5-103   1bqu A:5-99  
  1.04e-25   0.00000214   102-208   1bqu A:100-214  
1c8pA   1.48e-21   0.00000269   5-100   1egj A:  
1cd9B   3.51e-32   0.00000095   2-108   1cd9 B:1-107  
  1.16e-20   0.00000135   110-209   1cd9 B:108-213  
1cfbA   1.06e-25   0.00000899   4-191   1cfb A:610-709  
1cn4A   7.84e-27   0.00000101   14-119   1eer B:8-116  
  1.24e-17   0.00000343   122-224   1eer B:117-220  
1danT   4.91e-25   0.0000342   5-78   2hft A:1-106  
1danU   2.07e-36   0.00000231   18-120    
1ebaA   2.32e-26   0.00000118   4-107   1eer B:8-116  
  1.32e-17   0.0000038   110-212   1eer B:117-220  
1ebpA   2.32e-26   0.00000118   4-107   1eer B:8-116  
  1.28e-17   0.00000296   109-211   1eer B:117-220  
1eerB   7.84e-27   0.00000101   12-117   1eer B:8-116  
  1.23e-17   0.00000343   120-222   1eer B:117-220  
1egjA   1.75e-21   0.00000269   4-99   1egj A:  
1ernA   2.32e-26   0.00000118   4-107   1eer B:8-116  
  1.29e-17   0.0000038   110-212   1eer B:117-220  
1f42A   4.95e-50   0.000000201   88-211   1f42 A:88-211  
  0.0000000000000143   0.0000055   212-303   1f42 A:212-306  
1f6fB   3.01e-36   0.00000193   5-100   1f6f B:5-100  
  3.1e-22   0.00000177   102-202   1f6f B:101-203  
1fakT   1e-35   0.00000231   103-205    
  4.51e-27   0.0000454   5-109   2hft A:1-106  
1fg9C   4.7e-34   0.00000318   110-222   1fyh B:110-223  
  3.71e-25   0.0000291   12-117   1fyh B:12-109  
  8.91e-23   0.000079   3-176   1fnf A:1236-1326  
1fnhA   4.79e-29   0.0001   95-262   1fnh A:93-182  
  3.17e-20   0.000038   3-90   1fnh A:3-92  
1fyhB   3.96e-34   0.00000318   110-222   1fyh B:110-223  
  3.57e-25   0.0000291   12-117   1fyh B:12-109  
1gcfA   2.57e-21   0.00000144   6-104   1cd9 B:108-213  
1hwgB   2.55e-35   0.000000853   32-130   1axi B:32-130  
  6.98e-20   0.00000299   131-234   1axi B:131-236  
1i1rA   3.34e-47   0.00000148   2-101   1i1r A:2-101  
  4.23e-27   0.00000197   101-199   1bqu A:5-99  
  6.58e-25   0.00000499   198-293   1bqu A:100-214  
1iarB   2.12e-40   0.00000114   2-96   1iar B:1-96  
  1.21e-16   0.00000212   94-197   1iar B:97-197  
1j8kA   1.21e-19   0.000022   3-90   1j8k A:  
1jpsT   5.34e-36   0.00000215   107-211    
  4.89e-27   0.0000454   9-113   2hft A:1-106  
1jrhI   1.11e-21   0.0000298   12-107   1fyh B:12-109  
1k85A   6.01e-18   0.000029   3-88   1k85 A:  
1lwrA   0.00000000000000597   0.0000272   3-93   1lwr A:  
1n26A   7.42e-36   0.00000126   94-195   1n26 A:94-195  
  2.64e-18   0.00000274   196-290   1n26 A:196-299  
1owwA   1.23e-16   0.0000136   15-97   1oww A:  
1p9mA   3.34e-47   0.00000148   2-101   1i1r A:2-101  
  4.09e-27   0.00000197   101-199   1bqu A:5-99  
  5.55e-25   0.00000499   198-293   1bqu A:100-214  
1p9mC   8.57e-35   0.00000153   1-100   1n26 A:94-195  
  6.02e-19   0.00000274   101-195   1n26 A:196-299  
1pvhA   1.5e-27   0.00000197   1-99   1bqu A:5-99  
  2.2e-25   0.00000499   98-193   1bqu A:100-214  
1q38A   0.00000000000017   0.0000387   7-80   1q38 A:  
1qg3A   7.91e-38   0.000018   3-186   1qg3 A:1126-1217  
1qr4A   1.24e-21   0.0000266   93-182   1qr4 A:88-175  
  3.93e-19   0.0000322   5-93   1qr4 A:1-87  
1tdqA   9.37e-25   0.0000831   106-278   1tdq A:186-271  
  0.00000000000000555   0.0000228   14-103   1tdq A:1-93  
1tenA   6.09e-17   0.0000813   2-90   1ten A:  
1uc6A   1.11e-20   0.00000398   5-100   1uc6 A:  
1uemA   3.77e-26   0.00000488   8-115   1uem A:  
1uenA   1.9e-23   0.00000156   5-122   1uen A:  
1ueyA   1.61e-28   0.00000141   5-123   1uey A:  
1ujtA   1.34e-17   0.0000101   25-114   1ujt A:  
1v5jA   7.9e-19   0.0000064   8-106   1v5j A:  
1va9A   1.42e-26   0.00000869   2-120   1va9 A:8-116  
1w0yT   1.07e-35   0.00000231   107-209    
  4.37e-27   0.0000454   9-113   2hft A:1-106  
1wf5A   9.12e-24   0.0000116   15-109   1wf5 A:8-115  
1wfnA   2.66e-22   0.0000137   9-105   1wfn A:8-113  
1wfoA   1.91e-24   0.00000504   9-127   1wfo A:8-124  
1wftA   5.24e-16   0.00000249   7-111   1wft A:  
1wfuA   9.14e-16   0.000000787   3-118   1wfu A:  
1wisA   2.87e-20   0.00000233   10-116   1wis A:8-118  
1wj3A   1.16e-19   0.00000245   1-106   1wj3 A:  
1wk0A   2.72e-20   0.000000362   1-135   1wk0 A:  
1wtgT   5.34e-36   0.00000215   107-211    
  4.96e-27   0.0000454   9-113   2hft A:1-106  
1x3dA   7.71e-22   0.00000427   10-109   1x3d A:8-112  
1x4xA   5.41e-21   0.00000568   8-97   1x4x A:8-100  
1x4yA   1.32e-20   0.00000323   8-105   1x4y A:8-108  
1x4zA   1.06e-23   0.0000124   16-111   1x4z A:8-115  
1x5aA   0.0000000000000998   0.0000226   18-98   1x5a A:8-101  
1x5fA   1.52e-23   0.0001   13-113   1x5f A:8-114  
1x5gA   2.18e-28   0.00000965   11-110   1x5g A:8-110  
1x5hA   8.08e-29   0.0001   9-116   1x5h A:8-126  
1x5iA   8.83e-22   0.00000295   10-118   1x5i A:8-120  
1x5lA   1.24e-24   0.0000532   8-103   1x5l A:8-105  
1x5xA   3.72e-20   0.00000622   7-103   1x5x A:8-103  
1x5yA   7.79e-22   0.0000235   9-103   1x5y A:8-105  
1x5zA   2.06e-23   0.00000941   1-109   1x5z A:8-109  
1y6kR   2.01e-46   0.00000165   101-206   1j7v R:101-206  
  4.59e-18   0.00000317   4-96   1j7v R:2-100  
1z6jT   4.89e-36   0.00000215   107-211    
  4.37e-27   0.0000454   9-113   2hft A:1-106  
2a2qT   1e-35   0.00000231   102-204    
  4.07e-27   0.0000454   4-108   2hft A:1-106  
2aerT   1e-35   0.00000231   103-205    
  4.31e-27   0.0000454   5-109   2hft A:1-106  
2aewA   1.8e-35   0.000000853   4-102   1axi B:32-130  
  1.79e-19   0.00000351   103-204   1axi B:131-236  
2arwA   2.22e-19   0.00000274   5-99   1n26 A:196-299  
2b5iB   1.09e-46   0.000000949   6-103   2b5i B:6-103  
  1.25e-19   0.00000168   106-207   2b5i B:104-207  
2b5iC   2.28e-28   0.0000041   2-109   2b5i C:34-129  
  3.41e-17   0.00000177   97-191   2b5i C:130-224  
2c4fU   2.55e-34   0.000000852   2-116   2c4f U:91-210  
2crmA   6.66e-24   0.00000297   9-112   2crm A:8-114  
2crzA   8.9e-23   0.00000607   7-103   2crz A:8-104  
2cspA   0.0000000000000031   0.00000187   10-123   2csp A:8-124  
2cuhA   0.00000000000000148   0.00000433   8-105   2cuh A:8-109  
2cuiA   3.95e-18   0.0000157   12-105   2cui A:6-106  
2cumA   3.59e-18   0.0000294   9-94   2cum A:7-99  
2d9qB   5.07e-33   0.000000899   96-202   2d9q B:97-203  
  3.99e-18   0.00000203   205-304   2d9q B:204-308  
2djsA   5.19e-22   0.0000343   8-101   2djs A:8-102  
2dn7A   3.87e-19   0.000017   8-92   2dn7 A:8-101  
2dtgE   1.48e-33   0.000000141   468-591   2dtg E:468-592  
  4.51e-24   0.00000219   738-886   2dtg E:808-909  
  9.42e-20   0.000000616   595-675,750-774   2dtg E:593-807  
2erjB   3.4e-48   0.00000108   11-108   2b5i B:6-103  
  2.24e-19   0.00000186   111-211   2b5i B:104-207  
2erjC   4.61e-28   0.0000041   40-147   2b5i C:34-129  
  5.65e-17   0.00000177   135-229   2b5i C:130-224  
2flbT   5.34e-36   0.00000215   106-210    
  4.96e-27   0.0000454   8-112   2hft A:1-106  
2fnbA   2.83e-18   0.0000246   8-95   2fnb A:  
2gysA   1.44e-37   0.00000063   1-103   1gh7 A:1-103  
  2.7e-29   0.00000189   216-309   1gh7 A:218-316  
  1.03e-24   0.000000802   104-216   1gh7 A:104-217  
  3.64e-20   0.00000297   323-418   1egj A:  
2hazA   1.85e-18   0.0000204   5-103   2haz A:489-589  
2hftA   1.2e-38   0.00000111   107-218   2hft A:107-211  
  4.96e-27   0.0000454   9-113   2hft A:1-106  
2hymA   2.27e-33   0.00000178   3-109   1n6v A:1-109  
  1.1e-32   0.00000209   110-211   1n6v A:110-212  
2ibbA   3.26e-27   0.0000207   4-211   2ic2 A:466-572  
2ibgA   3.31e-27   0.0000207   4-211   2ic2 A:466-572  
2ic2A   6.01e-19   0.00000239   5-104   2ic2 A:466-572  
2jixB   2.01e-26   0.00000101   11-116   1eer B:8-116  
  1.45e-17   0.0000038   119-221   1eer B:117-220  
2vkwA   3.94e-26   0.0000696   8-197   2haz A:489-589  
2vkxA   5.56e-26   0.0000696   8-197   2haz A:489-589  
3d48R   8.78e-36   0.00000182   7-103   1bp3 B:202-300  
  3.79e-22   0.00000158   102-204   1bp3 B:301-404  
3d85D   1.63e-49   0.000000217   88-211   1f42 A:88-211  
  0.0000000000000143   0.0000055   212-303   1f42 A:212-306  
3duhA   7.73e-50   0.000000201   90-213   1f42 A:88-211  
  0.0000000000000161   0.0000055   214-305   1f42 A:212-306  
3hhrB   1.77e-35   0.000000853   1-99   1axi B:32-130  
  4.74e-20   0.00000299   100-203   1axi B:131-236  
 
Weak hits:
1fnaA   1.42e-22   0.019   1-80   1fna A:  
1fnfA   1.12e-28   0.038   187-359   1fna A:  
1ttfA   6.46e-24   0.031   3-85   1fna A:  
1x5jA   4.8e-19   0.00077   8-106   1x5j A:8-107  
1x5kA   3.49e-27   0.00022   11-117   1x5k A:8-118  
2mfnA   1.78e-28   0.0064   4-175   2mfn A:93-184  
3csbA   3.1e-17   0.0074   373-448   3csb A:375-467  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Fibronectin type III domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   124187 124187
No Yes Homo sapiens 76_38 Human 549 285
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 109 56
No Yes Gorilla gorilla 76_3.1 Western gorilla 151 84
No Yes Pongo abelii 76_2 Sumatran orangutan 130 68
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 131 63
No Yes Papio anubis 76 Olive baboon 125 66
No Yes Macaca mulatta 76_1 Rhesus monkey 224 111
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 270 151
No Yes Otolemur garnettii 76_3 Small-eared galago 111 62
No Yes Microcebus murinus 76_1 Gray mouse lemur 88 47
No Yes Rattus norvegicus 76_5.0 Norway rat 136 82
No Yes Mus musculus 76_38 House mouse 292 157
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 80 46
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 103 59
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 100 58
No Yes Cavia porcellus 76_3 Domestic guinea pig 147 73
No Yes Oryctolagus cuniculus 76_2 Rabbit 114 62
No Yes Ochotona princeps 76 American pika 96 53
No Yes Tupaia belangeri 76 Northern tree shrew 72 42
No Yes Sus scrofa 76_10.2 Pig 126 81
No Yes Bos taurus 76_3.1 Cattle 129 65
No Yes Ovis aries 76_3.1 Sheep 124 64
No Yes Vicugna pacos 76_1 Alpaca 52 30
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 103 54
No Yes Mustela putorius furo 76_1.0 Domestic ferret 112 61
No Yes Ailuropoda melanoleuca 76_1 Giant panda 134 70
No Yes Canis familiaris 76_3.1 Dog 169 92
No Yes Felis catus 76_6.2 Domestic cat 119 64
No Yes Equus caballus 76_2 Horse 168 84
No Yes Myotis lucifugus 76_2.0 Little brown bat 97 53
No Yes Pteropus vampyrus 76_1 Large flying fox 95 53
No Yes Sorex araneus 76_1 European shrew 57 29
No Yes Erinaceus europaeus 76 Western European hedgehog 73 41
No Yes Procavia capensis 76_1 Cape rock hyrax 83 50
No Yes Loxodonta africana 76_3 African savanna elephant 175 90
No Yes Echinops telfairi 76 Small Madagascar hedgehog 71 43
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 113 64
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 49 29
No Yes Macropus eugenii 76_1.0 Tammar wallaby 79 48
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 119 69
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 107 57
No Yes Ornithorhynchus anatinus 76_5 Platypus 88 58
No Yes Saccoglossus kowalevskii v3.0   61 32
No Yes Petromyzon marinus 76_7.0 Sea lamprey 23 13
No Yes Meleagris gallopavo 76_2 Turkey 104 67
No Yes Gallus gallus 76_4 Chicken 103 58
No Yes Anas platyrhynchos 76_1.0 Mallard 91 50
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 80 48
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 98 58
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 101 60
No Yes Anolis carolinensis 76_2.0 Green anole 84 53
No Yes Xenopus laevis African clawed frog 155 93
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 85 48
No Yes Latimeria chalumnae 76_1 Coelacanth 81 48
No Yes Lepisosteus oculatus 76 Spotted gar 122 71
No Yes Gadus morhua 76_1 Atlantic cod 96 70
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 145 88
No Yes Takifugu rubripes 76_4 Torafugu 444 293
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 104 74
No Yes Oryzias latipes 76_1 Japanese medaka 96 66
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 93 60
No Yes Poecilia formosa 76 Amazon molly 106 65
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 150 99
No Yes Astyanax mexicanus 76 Mexican tetra 104 62
No Yes Danio rerio 76_9 Zebrafish 205 120
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 30 13
No Yes Ciona intestinalis 76 Vase tunicate 7 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Adineta vaga   6 4
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 5 3
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   4 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 3
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 4 4
No Yes Nasonia vitripennis Jewel wasp 5 5
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 17 17
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 3
No Yes Linepithema humile v1.1 Argentine ant 3 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 5 4
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 4 4
No Yes Atta cephalotes v1.1   4 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 5
No Yes Lucilia cuprina Australian sheep blowfly 4 4
No Yes Drosophila grimshawi 1.3   6 6
No Yes Drosophila willistoni 1.3   6 6
No Yes Drosophila pseudoobscura 2.13   6 6
No Yes Drosophila persimilis 1.3   5 5
No Yes Drosophila suzukii   6 6
No Yes Drosophila yakuba 1.3   5 5
No Yes Drosophila simulans 1.3   4 4
No Yes Drosophila sechellia 1.3   5 5
No Yes Drosophila melanogaster 76_5 Fruit fly 23 23
No Yes Drosophila erecta 1.3   5 5
No Yes Drosophila ananassae 1.3   6 6
No Yes Drosophila virilis 1.2   5 5
No Yes Drosophila mojavensis 1.3   6 6
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 6 6
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 4
No Yes Anopheles darlingi 22 American malaria mosquito 3 3
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 3
No Yes Tribolium castaneum 3.0 Red flour beetle 4 4
No Yes Pediculus humanus corporis (Early assembly) Human body louse 5 4
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   3 3
No Yes Daphnia pulex Common water flea 5 3
No Yes Strigamia maritima 22   10 7
No Yes Sarcoptes scabiei   3 3
No Yes Tetranychus urticae Two-spotted spider mite 4 4
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Trichoplax adhaerens   1 1
No Yes Catenulispora acidiphila DSM 44928   6 5
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   3 3
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Cellulomonas fimi ATCC 484   2 2
No Yes [Cellvibrio] gilvus ATCC 13127   3 3
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Clostridium beijerinckii NCIMB 8052   2 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   3 2
No Yes Paenibacillus mucilaginosus 3016   7 5
No Yes Paenibacillus polymyxa M1   1 1
No Yes Listeria innocua Clip11262   1 1
No Yes Krokinobacter sp. 4H-3-7-5   1 1
No Yes Croceibacter atlanticus HTCC2559   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Flavobacterium columnare ATCC 49512   4 3
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Stigmatella aurantiaca DW4/3-1   6 5
No Yes Corallococcus coralloides DSM 2259   3 2
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 89 58
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 19 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Streptomyces davawensis JCM 4913   4 4
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus mucilaginosus KNP414   6 5
No Yes Paenibacillus mucilaginosus K02   6 4
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 581 305
No Yes Homo sapiens (NCBI version) Human 263 131
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 117 63
No Yes Homo sapiens 69_37 Human 134 68
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 109 56
No Yes Gorilla gorilla 69_3.1 Western gorilla 111 58
No Yes Pongo abelii 69_2 Sumatran orangutan 108 57
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 104 53
No Yes Macaca mulatta 69_1 Rhesus monkey 110 56
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 111 59
No Yes Otolemur garnettii 69_3 Small-eared galago 110 61
No Yes Microcebus murinus 69_1 Gray mouse lemur 88 47
No Yes Rattus norvegicus 69_3.4 Norway rat 98 58
No Yes Mus musculus 69_38 House mouse 121 66
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 80 46
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 98 55
No Yes Cavia porcellus 69_3 Domestic guinea pig 112 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 106 56
No Yes Ochotona princeps 69 American pika 96 53
No Yes Tupaia belangeri 69 Northern tree shrew 72 42
No Yes Sus scrofa 69_10.2 Pig 95 58
No Yes Bos taurus 69_3.1 Cattle 112 59
No Yes Vicugna pacos 69_1 Alpaca 52 30
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 103 54
No Yes Mustela putorius furo 69_1.0 Domestic ferret 111 60
No Yes Ailuropoda melanoleuca 69_1 Giant panda 114 61
No Yes Canis familiaris 69_3.1 Dog 117 62
No Yes Felis catus 69 Domestic cat 75 43
No Yes Equus caballus 69_2 Horse 118 60
No Yes Myotis lucifugus 69_2.0 Little brown bat 97 53
No Yes Pteropus vampyrus 69_1 Large flying fox 95 53
No Yes Sorex araneus 69_1 European shrew 57 29
No Yes Erinaceus europaeus 69 Western European hedgehog 73 41
No Yes Procavia capensis 69_1 Cape rock hyrax 83 50
No Yes Loxodonta africana 69_3 African savanna elephant 114 59
No Yes Echinops telfairi 69 Small Madagascar hedgehog 71 43
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 67 40
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 49 29
No Yes Macropus eugenii 69_1.0 Tammar wallaby 79 48
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 95 56
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 101 56
No Yes Ornithorhynchus anatinus 69_5 Platypus 82 54
No Yes Petromyzon marinus 69_7.0 Sea lamprey 23 13
No Yes Meleagris gallopavo 69_2 Turkey 75 46
No Yes Gallus gallus 69_2 Chicken 78 45
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 79 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 77 45
No Yes Anolis carolinensis 69_2.0 Green anole 82 52
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 72 41
No Yes Latimeria chalumnae 69_1 Coelacanth 74 44
No Yes Gadus morhua 69_1 Atlantic cod 82 56
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 86 54
No Yes Takifugu rubripes 69_4 Torafugu 101 60
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 88 58
No Yes Oryzias latipes 69_1 Japanese medaka 86 56
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 93 60
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 104 67
No Yes Danio rerio 69_9 Zebrafish 111 63
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 3
No Yes Ciona intestinalis 69 Vase tunicate 7 2
No Yes Drosophila melanogaster 69_5 Fruit fly 5 5
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes NCBI 2017_08 genome   71041 40963
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   2501 1446
No Yes Uniprot 2018_03 genome   25820 15784
No Yes PDB chains (SCOP 1.75) (PDB)   172 117
No Yes Protein Data Bank (all PDB sequenc)   608 360
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1840 1835
No Yes TargetDB (Targets)   249 164

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]