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Cadherin-like superfamily domain assignments
in
Candidatus Nitrospira defluvii

Assignment details

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Candidatus Nitrospira defluvii has 9 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|302038432|ref|YP_003798754.1|   0.0000000000000785   577-671   Cadherin  
  0.00000000000271   1215-1300   Cadherin  
  0.00000000000271   1430-1515   Cadherin  
  0.00000000000328   1000-1085   Cadherin  
  0.00000000000357   785-870   Cadherin  
  0.00000000000485   682-775   Cadherin  
  0.00000000000602   472-567   Cadherin  
  0.0000000000262   1761-1852   Cadherin  
gi|302039362|ref|YP_003799684.1|   0.000000204   251-326   Cadherin  
 
Weak hits:
gi|302036552|ref|YP_003796874.1|   0.0746   75-160   Cadherin  

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Select to display   Genome       Domains   Proteins
No Yes ALL   829818 829818
No Yes Homo sapiens 76_38 Human 2079 350
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 756 107
No Yes Gorilla gorilla 76_3.1 Western gorilla 952 132
No Yes Pongo abelii 76_2 Sumatran orangutan 528 79
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 613 87
No Yes Papio anubis 76 Olive baboon 617 86
No Yes Macaca mulatta 76_1 Rhesus monkey 918 149
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1188 171
No Yes Otolemur garnettii 76_3 Small-eared galago 607 86
No Yes Microcebus murinus 76_1 Gray mouse lemur 448 68
No Yes Rattus norvegicus 76_5.0 Norway rat 840 125
No Yes Mus musculus 76_38 House mouse 1275 186
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 418 67
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 611 97
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 634 84
No Yes Cavia porcellus 76_3 Domestic guinea pig 553 80
No Yes Oryctolagus cuniculus 76_2 Rabbit 651 81
No Yes Ochotona princeps 76 American pika 440 70
No Yes Tupaia belangeri 76 Northern tree shrew 409 62
No Yes Sus scrofa 76_10.2 Pig 631 103
No Yes Bos taurus 76_3.1 Cattle 685 100
No Yes Ovis aries 76_3.1 Sheep 701 94
No Yes Vicugna pacos 76_1 Alpaca 348 60
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 508 74
No Yes Mustela putorius furo 76_1.0 Domestic ferret 548 72
No Yes Ailuropoda melanoleuca 76_1 Giant panda 742 99
No Yes Canis familiaris 76_3.1 Dog 684 96
No Yes Felis catus 76_6.2 Domestic cat 629 87
No Yes Equus caballus 76_2 Horse 789 101
No Yes Myotis lucifugus 76_2.0 Little brown bat 633 85
No Yes Pteropus vampyrus 76_1 Large flying fox 523 77
No Yes Sorex araneus 76_1 European shrew 374 62
No Yes Erinaceus europaeus 76 Western European hedgehog 428 68
No Yes Procavia capensis 76_1 Cape rock hyrax 483 75
No Yes Loxodonta africana 76_3 African savanna elephant 699 105
No Yes Echinops telfairi 76 Small Madagascar hedgehog 402 65
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 668 96
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 297 54
No Yes Macropus eugenii 76_1.0 Tammar wallaby 418 70
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 666 92
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 598 83
No Yes Ornithorhynchus anatinus 76_5 Platypus 541 117
No Yes Saccoglossus kowalevskii v3.0   997 82
No Yes Petromyzon marinus 76_7.0 Sea lamprey 209 40
No Yes Meleagris gallopavo 76_2 Turkey 659 86
No Yes Gallus gallus 76_4 Chicken 577 70
No Yes Anas platyrhynchos 76_1.0 Mallard 539 72
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 505 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 647 88
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 667 89
No Yes Anolis carolinensis 76_2.0 Green anole 888 131
No Yes Xenopus laevis African clawed frog 370 77
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 666 96
No Yes Latimeria chalumnae 76_1 Coelacanth 708 96
No Yes Lepisosteus oculatus 76 Spotted gar 1016 112
No Yes Gadus morhua 76_1 Atlantic cod 851 123
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 148
No Yes Takifugu rubripes 76_4 Torafugu 3757 475
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 867 110
No Yes Oryzias latipes 76_1 Japanese medaka 842 114
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 734 107
No Yes Poecilia formosa 76 Amazon molly 966 108
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1072 138
No Yes Astyanax mexicanus 76 Mexican tetra 989 138
No Yes Danio rerio 76_9 Zebrafish 1727 254
No Yes Oikopleura dioica   82 22
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 372 32
No Yes Ciona intestinalis 76 Vase tunicate 136 21
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 264 41
No Yes Adineta vaga   154 36
No Yes Octopus bimaculoides 280   1159 238
No Yes Crassostrea gigas 22 Pacific oyster 729 99
No Yes Lottia gigantea Owl limpet 633 85
No Yes Helobdella robusta   343 95
No Yes Capitella sp. I   546 75
No Yes Danaus plexippus OGS1.0 Monarch butterfly 205 22
No Yes Heliconius melpomene Postman butterfly 176 26
No Yes Bombyx mori Domestic silkworm 181 48
No Yes Nasonia vitripennis Jewel wasp 137 13
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 700 68
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 202 23
No Yes Linepithema humile v1.1 Argentine ant 198 33
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 198 41
No Yes Solenopsis invicta v.2.2.3 Red fire ant 149 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 199 24
No Yes Atta cephalotes v1.1   215 42
No Yes Camponotus floridanus v3.3 Florida carpenter ant 199 21
No Yes Lucilia cuprina Australian sheep blowfly 200 22
No Yes Drosophila grimshawi 1.3   224 24
No Yes Drosophila willistoni 1.3   202 19
No Yes Drosophila pseudoobscura 2.13   198 18
No Yes Drosophila persimilis 1.3   194 25
No Yes Drosophila suzukii   211 21
No Yes Drosophila yakuba 1.3   208 19
No Yes Drosophila simulans 1.3   161 20
No Yes Drosophila sechellia 1.3   201 27
No Yes Drosophila melanogaster 76_5 Fruit fly 573 51
No Yes Drosophila erecta 1.3   202 20
No Yes Drosophila ananassae 1.3   209 22
No Yes Drosophila virilis 1.2   215 18
No Yes Drosophila mojavensis 1.3   201 21
No Yes Megaselia scalaris 22   79 26
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 176 25
No Yes Culex pipiens quinquefasciatus Southern house mosquito 206 33
No Yes Anopheles darlingi 22 American malaria mosquito 129 20
No Yes Anopheles gambiae 49_3j African malaria mosquito 297 42
No Yes Tribolium castaneum 3.0 Red flour beetle 212 24
No Yes Pediculus humanus corporis (Early assembly) Human body louse 201 18
No Yes Acyrthosiphon pisum Pea aphid 127 16
No Yes Rhodnius prolixus 22   191 28
No Yes Daphnia pulex Common water flea 238 24
No Yes Strigamia maritima 22   217 27
No Yes Sarcoptes scabiei   132 18
No Yes Tetranychus urticae Two-spotted spider mite 172 18
No Yes Ixodes scapularis (Preliminary) Black-legged tick 178 21
No Yes Pristionchus pacificus   96 21
No Yes Meloidogyne incognita Southern root-knot nematode 15 9
No Yes Meloidogyne hapla   23 11
No Yes Onchocerca volvulus 22   127 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 121 21
No Yes Caenorhabditis japonica   129 24
No Yes Caenorhabditis brenneri   169 24
No Yes Caenorhabditis remanei   151 23
No Yes Caenorhabditis elegans 76_235 Roundworm 231 31
No Yes Caenorhabditis briggsae 2   142 21
No Yes Trichinella spiralis 22   162 20
No Yes Hymenolepis microstoma   248 42
No Yes Echinococcus multilocularis   252 41
No Yes Echinococcus granulosus   250 40
No Yes Taenia solium Pork tapeworm 214 53
No Yes Schistosoma mansoni   228 61
No Yes Mnemiopsis leidyi Sea walnut 43 8
No Yes Acropora digitifera v1.0   301 51
No Yes Nematostella vectensis 1.0 Starlet sea anemone 487 65
No Yes Hydra vulgaris   207 18
No Yes Amphimedon queenslandica   386 24
No Yes Trichoplax adhaerens   100 16
No Yes Proterospongia sp. ATCC 50818   333 30
No Yes Monosiga brevicollis   269 19
No Yes Capsaspora owczarzaki ATCC 30864   13 3
No Yes Mortierella verticillata NRRL 6337   4 2
No Yes Malassezia globosa CBS 7966   8 4
No Yes Sporisorium reilianum 22   5 2
No Yes Ustilago maydis   5 2
No Yes Mixia osmundae IAM 14324 v1.0   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   4 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 1
No Yes Melampsora laricis-populina   4 1
No Yes Rhodotorula graminis WP1 v1.0   3 1
No Yes Microbotryum violaceum 22   3 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Piloderma croceum F 1598 v1.0   2 1
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   3 2
No Yes Hydnomerulius pinastri v2.0   4 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 2
No Yes Pisolithus microcarpus 441 v1.0   3 2
No Yes Pisolithus tinctorius Marx 270 v1.0   3 2
No Yes Scleroderma citrinum Foug A v1.0   3 2
No Yes Coprinopsis cinerea okayama7 130 v3   3 2
No Yes Pleurotus ostreatus Oyster mushroom 3 2
No Yes Amanita thiersii Skay4041 v1.0   3 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 4 2
No Yes Galerina marginata v1.0   3 1
No Yes Hebeloma cylindrosporum h7 v2.0   3 2
No Yes Laccaria bicolor S238N-H82   3 2
No Yes Agaricus bisporus var. bisporus   3 2
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   3 2
No Yes Punctularia strigosozonata v1.0   4 2
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   6 6
No Yes Postia placenta   6 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   3 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 2
No Yes Phanerochaete chrysosporium RP-78 2.1   3 2
No Yes Dichomitus squalens   4 2
No Yes Trametes versicolor v1.0   4 2
No Yes Tremella mesenterica Witches' butter 7 2
No Yes Daldinia eschscholzii EC12 v1.0   3 1
No Yes Apiospora montagnei NRRL 25634 v1.0   3 1
No Yes Magnaporthe poae ATCC 64411 22   3 1
No Yes Magnaporthe grisea 70-15   3 1
No Yes Podospora anserina   4 1
No Yes Thielavia terrestris NRRL 8126   4 1
No Yes Chaetomium globosum CBS 148.51   4 1
No Yes Neurospora tetrasperma   3 1
No Yes Neurospora discreta FGSC 8579   3 1
No Yes Neurospora crassa OR74A   3 1
No Yes Cryphonectria parasitica Chestnut blight fungus 3 1
No Yes Acremonium alcalophilumv 1.0   3 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   4 2
No Yes Nectria haematococca mpVI   3 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 1
No Yes Fusarium verticillioides 7600   3 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   4 2
No Yes Trichoderma atroviride   4 2
No Yes Trichoderma citrinoviride v1.0   3 1
No Yes Trichoderma reesei 1.2   3 1
No Yes Trichoderma virens Gv29-8   4 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   3 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   4 2
No Yes Didymella exigua CBS 183.55 v1.0   4 1
No Yes Leptosphaeria maculans 22   4 1
No Yes Pyrenophora teres f. teres 22   4 1
No Yes Pyrenophora tritici-repentis   3 1
No Yes Stagonospora nodorum   3 1
No Yes Zasmidium cellare ATCC 36951 v1.0   4 1
No Yes Dothistroma septosporum   4 1
No Yes Septoria musiva v1.0   4 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Aspergillus zonatus v1.0   4 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   4 1
No Yes Penicillium chrysogenum v1.0   4 1
No Yes Aspergillus acidus v1.0   4 1
No Yes Aspergillus fumigatus Af293   3 1
No Yes Aspergillus brasiliensis v1.0   4 1
No Yes Aspergillus nidulans FGSC A4   3 1
No Yes Aspergillus sydowii v1.0   3 1
No Yes Aspergillus versicolor v1.0   3 1
No Yes Aspergillus glaucus   3 1
No Yes Aspergillus carbonarius ITEM 5010   4 1
No Yes Neosartorya fischeri NRRL 181   4 1
No Yes Aspergillus terreus NIH2624   4 1
No Yes Aspergillus tubingensis v1.0   4 1
No Yes Aspergillus wentii v1.0   4 1
No Yes Aspergillus oryzae RIB40   4 1
No Yes Aspergillus niger 22   4 1
No Yes Aspergillus niger ATCC 1015   4 1
No Yes Aspergillus flavus NRRL3357   3 1
No Yes Aspergillus clavatus NRRL 1   3 1
No Yes Penicillium marneffei ATCC 18224   4 1
No Yes Hansenula polymorpha v2.0   4 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   3 1
No Yes Pichia membranifaciensv1.0   3 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 1
No Yes Candida dubliniensis CD36   4 1
No Yes Candida tropicalis MYA-3404   4 1
No Yes Candida parapsilosis   3 1
No Yes Candida albicans SC5314   4 1
No Yes Lodderomyces elongisporus NRRL YB-4239   2 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   3 1
No Yes Pichia stipitis CBS 6054   3 1
No Yes Candida guilliermondii ATCC 6260   4 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 1
No Yes Debaromyces hansenii   4 1
No Yes Wickerhamomyces anomalus   3 1
No Yes Pichia pastoris GS115   3 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 1
No Yes Yarrowia lipolytica CLIB122   3 1
No Yes Candida lusitaniae ATCC 42720   3 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   4 1
No Yes Vanderwaltozyma polyspora DSM 70294   3 1
No Yes Candida glabrata CBS138   3 1
No Yes Kluyveromyces thermotolerans CBS 6340   3 1
No Yes Lachancea kluyveri   3 1
No Yes Kluyveromyces waltii   3 1
No Yes Ashbya gossypii ATCC 10895   3 1
No Yes Zygosaccharomyces rouxii   3 1
No Yes Saccharomyces mikatae MIT   3 1
No Yes Saccharomyces paradoxus MIT   3 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 3 1
No Yes Saccharomyces bayanus MIT   3 1
No Yes Kluyveromyces lactis   3 1
No Yes Allomyces macrogynus ATCC 38327   8 4
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   10 3
No Yes Albugo laibachii 22   59 1
No Yes Pythium iwayamai DAOM BR242034 22   51 1
No Yes Pythium ultimum v1.7-2   58 4
No Yes Pythium irregulare DAOM BR486 22   28 1
No Yes Phytophthora infestans T30-4   14 2
No Yes Tetrahymena thermophila SB210 1   56 50
No Yes Ichthyophthirius multifiliis strain G5   2 2
No Yes Symbiodinium minutum clade B1 v1.2   22 7
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   1 1
No Yes Guillardia theta CCMP2712 v1.0   3 3
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   13 2
No Yes Synechocystis sp. PCC 6803   10 1
No Yes Synechococcus sp. PCC 7502   4 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   5 4
No Yes Halothece sp. PCC 7418   8 5
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   19 5
No Yes Calothrix sp. PCC 7507   5 2
No Yes Anabaena variabilis ATCC 29413   3 3
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 1
No Yes Nostoc sp. PCC 7120   7 2
No Yes Nostoc sp. PCC 7524   59 6
No Yes Anabaena sp. 90   13 4
No Yes Conexibacter woesei DSM 14684   6 2
No Yes Eggerthella sp. YY7918   1 1
No Yes Ilumatobacter coccineus   5 2
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   28 23
No Yes Frankia alni ACN14a   3 1
No Yes Streptosporangium roseum DSM 43021   3 1
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   3 3
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Amycolatopsis mediterranei U32   3 3
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   5 3
No Yes Actinoplanes sp. SE50/110   11 5
No Yes Actinoplanes missouriensis 431   4 2
No Yes Rhodococcus erythropolis PR4   2 2
No Yes Corynebacterium resistens DSM 45100   3 2
No Yes Corynebacterium glutamicum R   4 2
No Yes Corynebacterium diphtheriae NCTC 13129   1 1
No Yes Tropheryma whipplei TW08/27   5 3
No Yes Microbacterium testaceum StLB037   1 1
No Yes Intrasporangium calvum DSM 43043   2 1
No Yes [Cellvibrio] gilvus ATCC 13127   3 1
No Yes Arthrobacter aurescens TC1   2 1
No Yes Arthrobacter sp. Rue61a   3 2
No Yes Arthrobacter sp. FB24   1 1
No Yes Mobiluncus curtisii ATCC 43063   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   2 2
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus castenholzii DSM 13941   9 2
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Marinithermus hydrothermalis DSM 14884   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Faecalibacterium prausnitzii   1 1
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium sticklandii DSM 519   2 1
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   1 1
No Yes Heliobacterium modesticaldum Ice1   4 2
No Yes Alkaliphilus metalliredigens QYMF   2 2
No Yes Clostridium ljungdahlii DSM 13528   2 1
No Yes Mahella australiensis 50-1 BON   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Aerococcus urinae ACS-120-V-Col10a   1 1
No Yes Streptococcus macedonicus ACA-DC 198   48 1
No Yes Kyrpidia tusciae DSM 2912   3 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   7 4
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Bacillus selenitireducens MLS10   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Macrococcus caseolyticus JCSC5402   14 1
No Yes Staphylococcus lugdunensis HKU09-01   33 1
No Yes Staphylococcus epidermidis RP62A   17 2
No Yes Staphylococcus aureus subsp. aureus JH1   2 1
No Yes Staphylococcus aureus   2 1
No Yes Melioribacter roseus P3M   5 4
No Yes Pelodictyon phaeoclathratiforme BU-1   5 3
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Chlorobium chlorochromatii CaD3   5 2
No Yes Chlorobium phaeobacteroides DSM 266   2 1
No Yes Chlorobium limicola DSM 245   6 1
No Yes Chlorobaculum parvum NCIB 8327   2 1
No Yes Chloroherpeton thalassium ATCC 35110   9 1
No Yes Haliscomenobacter hydrossis DSM 1100   10 4
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   12 4
No Yes Salinibacter ruber M8   1 1
No Yes Rhodothermus marinus DSM 4252   2 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   26 5
No Yes Fibrella aestuarina   8 5
No Yes Dyadobacter fermentans DSM 18053   4 2
No Yes Spirosoma linguale DSM 74   6 5
No Yes Runella slithyformis DSM 19594   12 4
No Yes Paludibacter propionicigenes WB4   8 3
No Yes Bacteroides thetaiotaomicron VPI-5482   2 2
No Yes Bacteroides fragilis YCH46   1 1
No Yes Pedobacter saltans DSM 12145   5 4
No Yes Solitalea canadensis DSM 3403   11 2
No Yes Pedobacter heparinus DSM 2366   10 6
No Yes Fluviicola taffensis DSM 16823   2 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Gramella forsetii KT0803   16 1
No Yes Maribacter sp. HTCC2170   3 2
No Yes Robiginitalea biformata HTCC2501   3 2
No Yes Aequorivita sublithincola DSM 14238   1 1
No Yes Zobellia galactanivorans   3 2
No Yes Muricauda ruestringensis DSM 13258   8 4
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   15 2
No Yes Parachlamydia acanthamoebae UV-7   2 1
No Yes Isosphaera pallida ATCC 43644   7 3
No Yes Planctomyces brasiliensis DSM 5305   2 1
No Yes Rhodopirellula baltica SH 1   39 10
No Yes Pirellula staleyi DSM 6068   8 6
No Yes Coraliomargarita akajimensis DSM 45221   1 1
No Yes Opitutus terrae PB90-1   25 10
No Yes Turneriella parva DSM 21527   2 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   11 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Treponema azotonutricium ZAS-9   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   4 2
No Yes Fervidobacterium pennivorans DSM 9078   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   97 13
No Yes Granulicella tundricola MP5ACTX9   10 3
No Yes Granulicella mallensis MP5ACTX8   8 4
No Yes Candidatus Koribacter versatilis Ellin345   7 5
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Terriglobus roseus DSM 18391   3 1
No Yes Acidobacterium capsulatum ATCC 51196   5 2
No Yes Candidatus Nitrospira defluvii   9 2
No Yes Candidatus Methylomirabilis oxyfera   2 1
No Yes Bacteriovorax marinus SJ   2 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Arcobacter sp. L   11 4
No Yes Arcobacter nitrofigilis DSM 7299   8 2
No Yes Arcobacter butzleri RM4018   4 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfomonile tiedjei DSM 6799   20 3
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfatibacillum alkenivorans AK-01   21 5
No Yes Desulfococcus oleovorans Hxd3   2 2
No Yes Desulfovibrio piezophilus   3 1
No Yes Desulfovibrio aespoeensis Aspo-2   2 1
No Yes Geobacter daltonii FRC-32   11 4
No Yes Geobacter sp. M21   19 1
No Yes Geobacter uraniireducens Rf4   12 4
No Yes Geobacter bemidjiensis Bem   36 3
No Yes Geobacter sulfurreducens KN400   17 2
No Yes Geobacter metallireducens GS-15   6 1
No Yes Pelobacter propionicus DSM 2379   2 1
No Yes Stigmatella aurantiaca DW4/3-1   5 4
No Yes Corallococcus coralloides DSM 2259   6 4
No Yes Myxococcus xanthus DK 1622   9 6
No Yes Myxococcus fulvus HW-1   10 7
No Yes Azoarcus sp. BH72   4 1
No Yes Aromatoleum aromaticum EbN1   2 1
No Yes Dechlorosoma suillum PS   4 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   13 3
No Yes beta proteobacterium CB   1 1
No Yes Rubrivivax gelatinosus IL144   10 6
No Yes Leptothrix cholodnii SP-6   24 2
No Yes Cupriavidus metallidurans CH34   3 1
No Yes Cupriavidus necator N-1   2 1
No Yes Ralstonia solanacearum CFBP2957   9 2
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Ramlibacter tataouinensis TTB310   4 2
No Yes Delftia sp. Cs1-4   9 5
No Yes Delftia acidovorans SPH-1   4 3
No Yes Variovorax paradoxus S110   11 1
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   3 1
No Yes Comamonas testosteroni CNB-2   2 1
No Yes Collimonas fungivorans Ter331   10 1
No Yes Bordetella parapertussis 12822   3 1
No Yes Bordetella bronchiseptica RB50   8 1
No Yes Achromobacter xylosoxidans A8   4 3
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Sideroxydans lithotrophicus ES-1   4 1
No Yes Gallionella capsiferriformans ES-2   2 1
No Yes Methylotenera versatilis 301   2 1
No Yes Magnetococcus marinus MC-1   61 6
No Yes Parvularcula bermudensis HTCC2503   2 1
No Yes Brevundimonas subvibrioides ATCC 15264   7 1
No Yes Caulobacter sp. K31   3 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   2 1
No Yes Sphingobium japonicum UT26S   8 2
No Yes Sphingobium chlorophenolicum L-1   9 3
No Yes Maricaulis maris MCS10   11 2
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   2 1
No Yes Rhodospirillum photometricum DSM 122   4 1
No Yes Tistrella mobilis KA081020-065   30 2
No Yes Magnetospirillum magneticum AMB-1   17 4
No Yes Rhodospirillum centenum SW   15 5
No Yes Azospirillum lipoferum 4B   2 2
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Micavibrio aeruginosavorus ARL-13   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   9 4
No Yes Methylobacterium extorquens AM1   47 3
No Yes Sinorhizobium meliloti AK83   4 2
No Yes Genome sequence of Rhizobium sp. strain IRBG74   4 1
No Yes Rhizobium etli CIAT 652   4 2
No Yes Rhizobium leguminosarum bv. viciae 3841   6 3
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium sp. H13-3   4 1
No Yes Agrobacterium vitis S4   7 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Nitrobacter hamburgensis X14   2 1
No Yes Bradyrhizobium japonicum USDA 110   4 1
No Yes Saccharophagus degradans 2-40   42 5
No Yes Teredinibacter turnerae T7901   20 5
No Yes Cellvibrio japonicus Ueda107   25 5
No Yes Oceanimonas sp. GK1   2 1
No Yes Aliivibrio salmonicida LFI1238   11 1
No Yes Vibrio fischeri MJ11   10 1
No Yes Vibrio sp. Ex25   6 3
No Yes Vibrio parahaemolyticus RIMD 2210633   2 2
No Yes Vibrio furnissii NCTC 11218   7 2
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   4 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Ferrimonas balearica DSM 9799   2 2
No Yes Shewanella piezotolerans WP3   4 4
No Yes Shewanella loihica PV-4   6 3
No Yes Shewanella halifaxensis HAW-EB4   2 2
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella pealeana ATCC 700345   2 2
No Yes Shewanella oneidensis MR-1   6 3
No Yes Shewanella baltica OS185   16 2
No Yes Shewanella woodyi ATCC 51908   11 7
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   21 2
No Yes Shewanella putrefaciens CN-32   16 2
No Yes Colwellia psychrerythraea 34H   17 2
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   2 2
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Kangiella koreensis DSM 16069   3 2
No Yes Hahella chejuensis KCTC 2396   26 8
No Yes Marinomonas posidonica IVIA-Po-181   4 2
No Yes Marinomonas sp. MWYL1   16 2
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylomonas methanica MC09   3 3
No Yes Rhodanobacter denitrificans   15 1
No Yes Xanthomonas axonopodis pv. citri str. 306   3 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   5 1
No Yes Xanthomonas campestris pv. campestris str. B100   9 1
No Yes Allochromatium vinosum DSM 180   3 1
No Yes Thiocystis violascens DSM 198   2 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)   1 1
No Yes Dickeya dadantii Ech703   2 1
No Yes Dickeya zeae Ech1591   8 2
No Yes Pectobacterium wasabiae WPP163   16 3
No Yes Pectobacterium sp. SCC3193   16 3
No Yes Pectobacterium atrosepticum SCRI1043   2 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   14 2
No Yes Pantoea sp. At-9b   2 1
No Yes Cronobacter turicensis z3032   2 1
No Yes Pseudomonas sp. UW4   4 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas protegens Pf-5   4 1
No Yes Pseudomonas sp. VLB120   6 1
No Yes Psychrobacter sp. PRwf-1   1 1
No Yes Acinetobacter baumannii ATCC 17978   2 1
No Yes Methylophaga sp. JAM1   4 1
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   2 2
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Methanocella arvoryzae MRE50   6 1
No Yes Methanococcoides burtonii DSM 6242   2 2
No Yes Methanosarcina acetivorans C2A   2 2
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   2 2
No Yes Thermoplasmatales archaeon BRNA1   2 2
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 892 118
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 499 38
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 300 41
No Yes Ascaris suum Victoria/Ghent Pig roundworm 124 29
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 155 20
No Yes Cryptococcus neoformans var. grubii H99   3 1
No Yes Cryptococcus neoformans B-3501A   3 1
No Yes Cryptococcus neoformans JEC21   3 1
No Yes Aspergillus fumigatus A1163   3 1
No Yes Candida albicans WO-1   4 1
No Yes Saccharomyces cerevisiae UC5   3 1
No Yes Saccharomyces cerevisiae PW5   3 1
No Yes Saccharomyces cerevisiae CLIB324   3 1
No Yes Saccharomyces cerevisiae CBS7960   3 1
No Yes Saccharomyces cerevisiae T7   3 1
No Yes Saccharomyces cerevisiae FostersB   3 1
No Yes Saccharomyces cerevisiae FostersO   2 1
No Yes Saccharomyces cerevisiae VL3   2 1
No Yes Saccharomyces cerevisiae Vin13   3 1
No Yes Saccharomyces cerevisiae LalvinQA23   3 1
No Yes Saccharomyces cerevisiae Sigma1278b   3 1
No Yes Saccharomyces cerevisiae W303   3 1
No Yes Saccharomyces cerevisiae JAY291   3 1
No Yes Saccharomyces cerevisiae AWRI1631   3 1
No Yes Saccharomyces cerevisiae YPS163   3 1
No Yes Saccharomyces cerevisiae T73   3 1
No Yes Saccharomyces cerevisiae Y10   3 1
No Yes Saccharomyces cerevisiae YJM789   3 1
No Yes Saccharomyces cerevisiae YJM789   3 1
No Yes Saccharomyces cerevisiae RM11-1a   3 1
No Yes Saccharomyces cerevisiae RM11-1a   3 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 3 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   10 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   10 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   10 1
No Yes Synechocystis sp. PCC 6803   10 1
No Yes Dactylococcopsis salina PCC 8305   67 20
No Yes Prochlorococcus marinus str. AS9601   4 1
No Yes Oscillatoria nigro-viridis PCC 7112   38 9
No Yes Oscillatoria acuminata PCC 6304   5 4
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   58 11
No Yes Cyanothece sp. ATCC 51142   3 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   16 4
No Yes Anabaena cylindrica PCC 7122   28 8
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces collinus Tu 365   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   5 5
No Yes Amycolatopsis mediterranei RB   3 3
No Yes Amycolatopsis mediterranei S699   3 3
No Yes Amycolatopsis mediterranei S699   3 3
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Rhodococcus erythropolis CCM2595   2 2
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Corynebacterium callunae DSM 20147   1 1
No Yes Corynebacterium glutamicum SCgG2   3 2
No Yes Corynebacterium glutamicum SCgG1   3 2
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium diphtheriae BH8   1 1
No Yes Corynebacterium diphtheriae INCA 402   1 1
No Yes Corynebacterium diphtheriae VA01   1 1
No Yes Corynebacterium diphtheriae HC04   1 1
No Yes Corynebacterium diphtheriae HC03   1 1
No Yes Corynebacterium diphtheriae HC02   1 1
No Yes Corynebacterium diphtheriae HC01   1 1
No Yes Corynebacterium diphtheriae 241   1 1
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Corynebacterium diphtheriae C7 (beta)   1 1
No Yes Corynebacterium diphtheriae 31A   1 1
No Yes Tropheryma whipplei str. Twist   5 3
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Clostridium autoethanogenum DSM 10061   2 1
No Yes Lactobacillus reuteri JCM 1112   1 1
No Yes Lactobacillus acidophilus NCFM   4 1
No Yes Streptococcus agalactiae 09mas018883   2 1
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   3 3
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Bacillus infantis NRRL B-14911   2 1
No Yes Bacillus megaterium WSH-002   19 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   2 1
No Yes Staphylococcus pasteuri SP1   2 1
No Yes Staphylococcus lugdunensis N920143   12 1
No Yes Staphylococcus warneri SG1   2 1
No Yes Staphylococcus aureus CA-347   2 1
No Yes Staphylococcus aureus Bmb9393   2 1
No Yes Staphylococcus aureus M1   2 1
No Yes Staphylococcus aureus 08BA02176   2 1
No Yes Staphylococcus aureus ST228/18412   2 1
No Yes Staphylococcus aureus ST228/18341   2 1
No Yes Staphylococcus aureus ST228/16125   2 1
No Yes Staphylococcus aureus ST228/16035   2 1
No Yes Staphylococcus aureus ST228/15532   2 1
No Yes Staphylococcus aureus ST228/10497   2 1
No Yes Staphylococcus aureus ST228/10388   2 1
No Yes Staphylococcus aureus 04-02981   2 1
No Yes Staphylococcus aureus subsp. aureus Z172   2 1
No Yes Staphylococcus aureus subsp. aureus 6850   2 1
No Yes Staphylococcus aureus subsp. aureus SA957   2 1
No Yes Staphylococcus aureus subsp. aureus CN1   2 1
No Yes Staphylococcus aureus subsp. aureus SA40   2 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   2 1
No Yes Staphylococcus aureus subsp. aureus M013   2 1
No Yes Staphylococcus aureus subsp. aureus VC40   2 1
No Yes Staphylococcus aureus subsp. aureus T0131   2 1
No Yes Staphylococcus aureus subsp. aureus LGA251   2 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   2 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   2 1
No Yes Staphylococcus aureus subsp. aureus ED133   2 1
No Yes Staphylococcus aureus subsp. aureus ED98   2 1
No Yes Staphylococcus aureus subsp. aureus TW20   2 1
No Yes Staphylococcus aureus subsp. aureus 55/2053   2 1
No Yes Staphylococcus aureus subsp. aureus TCH60   2 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   2 1
No Yes Staphylococcus aureus subsp. aureus 71193   2 1
No Yes Staphylococcus aureus subsp. aureus S0385   2 1
No Yes Staphylococcus aureus subsp. aureus str. Newman   2 1
No Yes Staphylococcus aureus subsp. aureus Mu3   2 1
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   2 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   2 1
No Yes Staphylococcus aureus subsp. aureus JH9   2 1
No Yes Staphylococcus aureus subsp. aureus MSSA476   2 1
No Yes Staphylococcus aureus subsp. aureus MRSA252   2 1
No Yes Staphylococcus aureus subsp. aureus MW2   2 1
No Yes Staphylococcus aureus subsp. aureus N315   2 1
No Yes Staphylococcus aureus subsp. aureus Mu50   2 1
No Yes Staphylococcus aureus subsp. aureus COL   2 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   2 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   3 2
No Yes Emticicia oligotrophica DSM 17448   4 4
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   15 2
No Yes Chlamydia trachomatis J/6276tet1   2 1
No Yes Chlamydia trachomatis RC-J(s)/122   2 1
No Yes Chlamydia trachomatis RC-F(s)/342   2 1
No Yes Chlamydia trachomatis RC-Fs852   2 1
No Yes Singulisphaera acidiphila DSM 18658   7 5
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   11 5
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   9 4
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Arcobacter butzleri ED-1   4 1
No Yes Desulfocapsa sulfexigens DSM 10523   3 2
No Yes Desulfobacula toluolica Tol2   2 1
No Yes Geobacter sp. M18   6 4
No Yes Geobacter sulfurreducens PCA   17 2
No Yes Anaeromyxobacter sp. K   1 1
No Yes Myxococcus stipitatus DSM 14675   9 5
No Yes Ralstonia pickettii 12J   8 1
No Yes Ralstonia solanacearum FQY_4   8 1
No Yes Ralstonia solanacearum Po82   10 3
No Yes Ralstonia solanacearum PSI07   10 2
No Yes Ralstonia solanacearum CMR15   8 1
No Yes Ralstonia solanacearum GMI1000   8 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   13 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   11 1
No Yes Bordetella parapertussis Bpp5   2 1
No Yes Bordetella bronchiseptica MO149   6 1
No Yes Bordetella bronchiseptica 253   7 1
No Yes Phaeobacter gallaeciensis DSM 26640   5 1
No Yes Rhodobacter sphaeroides KD131   2 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   16 11
No Yes Rhizobium etli CFN 42   2 1
No Yes Rhizobium etli bv. mimosae str. Mim1   2 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   8 3
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   6 3
No Yes Rhodopseudomonas palustris HaA2   3 3
No Yes Bradyrhizobium oligotrophicum S58   15 2
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   2 2
No Yes Vibrio fischeri ES114   7 1
No Yes Vibrio sp. EJY3   6 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   4 2
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio cholerae M66-2   7 1
No Yes Vibrio cholerae O395   4 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   3 1
No Yes Vibrio cholerae MJ-1236   3 1
No Yes Shewanella sp. W3-18-1   7 2
No Yes Shewanella sp. ANA-3   14 1
No Yes Shewanella baltica BA175   2 1
No Yes Shewanella baltica OS678   13 2
No Yes Shewanella baltica OS117   2 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   16 2
No Yes Shewanella baltica OS155   2 1
No Yes Shewanella putrefaciens 200   14 2
No Yes Glaciecola psychrophila 170   5 4
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Thalassolituus oleivorans MIL-1   15 2
No Yes Stenotrophomonas maltophilia JV3   10 1
No Yes Xanthomonas citri subsp. citri Aw12879   3 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   5 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   5 1
No Yes Xanthomonas axonopodis Xac29-1   3 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   5 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   4 1
No Yes Xanthomonas campestris pv. raphani 756C   9 1
No Yes Xanthomonas campestris pv. campestris str. 8004   9 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   9 1
No Yes Dickeya dadantii Ech586   3 1
No Yes Dickeya dadantii 3937   2 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   2 1
No Yes Cronobacter sakazakii CMCC 45402   2 1
No Yes Cronobacter sakazakii SP291   2 1
No Yes Cronobacter sakazakii ATCC BAA-894   2 1
No Yes Pseudomonas denitrificans ATCC 13867   3 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas protegens CHA0   4 1
No Yes Pseudomonas fluorescens F113   2 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   7 1
No Yes Acinetobacter baumannii ATCC 19606   2 1
No Yes Methylophaga sp. JAM7   4 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   2 2
No Yes Methanomethylovorans hollandica DSM 15978   9 6
No Yes Methanolobus psychrophilus R15   11 3
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Haloquadratum walsbyi C23   1 1
No Yes Natronomonas moolapensis 8.8.11   9 2
No Yes Homo sapiens 75_37 (old version GRC) Human 2051 355
No Yes Homo sapiens (NCBI version) Human 1556 235
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 627 89
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 123 22
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 113 44
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 101 15
No Yes Ricinus communis (Early assembly) Castor bean 7 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 816 116
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 642 87
No Yes Gorilla gorilla 69_3.1 Western gorilla 548 74
No Yes Pongo abelii 69_2 Sumatran orangutan 503 74
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 559 76
No Yes Macaca mulatta 69_1 Rhesus monkey 518 76
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 555 74
No Yes Otolemur garnettii 69_3 Small-eared galago 593 83
No Yes Microcebus murinus 69_1 Gray mouse lemur 448 68
No Yes Rattus norvegicus 69_3.4 Norway rat 782 101
No Yes Mus musculus 69_38 House mouse 633 91
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 418 67
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 584 91
No Yes Cavia porcellus 69_3 Domestic guinea pig 527 74
No Yes Oryctolagus cuniculus 69_2 Rabbit 547 75
No Yes Ochotona princeps 69 American pika 440 70
No Yes Tupaia belangeri 69 Northern tree shrew 409 62
No Yes Sus scrofa 69_10.2 Pig 595 94
No Yes Bos taurus 69_3.1 Cattle 642 90
No Yes Vicugna pacos 69_1 Alpaca 348 60
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 508 74
No Yes Mustela putorius furo 69_1.0 Domestic ferret 544 71
No Yes Ailuropoda melanoleuca 69_1 Giant panda 621 85
No Yes Canis familiaris 69_3.1 Dog 550 72
No Yes Felis catus 69 Domestic cat 398 69
No Yes Equus caballus 69_2 Horse 571 78
No Yes Myotis lucifugus 69_2.0 Little brown bat 627 84
No Yes Pteropus vampyrus 69_1 Large flying fox 523 77
No Yes Sorex araneus 69_1 European shrew 374 62
No Yes Erinaceus europaeus 69 Western European hedgehog 428 68
No Yes Procavia capensis 69_1 Cape rock hyrax 483 75
No Yes Loxodonta africana 69_3 African savanna elephant 474 69
No Yes Echinops telfairi 69 Small Madagascar hedgehog 402 65
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 341 60
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 297 54
No Yes Macropus eugenii 69_1.0 Tammar wallaby 418 70
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 605 82
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 587 81
No Yes Ornithorhynchus anatinus 69_5 Platypus 507 108
No Yes Petromyzon marinus 69_7.0 Sea lamprey 183 34
No Yes Meleagris gallopavo 69_2 Turkey 506 63
No Yes Gallus gallus 69_2 Chicken 511 65
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 480 64
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 508 75
No Yes Anolis carolinensis 69_2.0 Green anole 879 133
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 605 84
No Yes Latimeria chalumnae 69_1 Coelacanth 629 84
No Yes Gadus morhua 69_1 Atlantic cod 728 98
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 715 99
No Yes Takifugu rubripes 69_4 Torafugu 902 115
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 736 91
No Yes Oryzias latipes 69_1 Japanese medaka 692 86
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 722 105
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 847 106
No Yes Danio rerio 69_9 Zebrafish 1300 196
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 112 12
No Yes Ciona intestinalis 69 Vase tunicate 116 18
No Yes Drosophila melanogaster 69_5 Fruit fly 215 18
No Yes Caenorhabditis elegans 69_215 Roundworm 135 16
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 3 1
No Yes 1_Upper_euphotic (meta-genome)   13 8
No Yes 2_050719S (meta-genome)   4 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   12 11
No Yes 4_050719Q (meta-genome)   42 21
No Yes 4_Deep_abyss (meta-genome)   14 9
No Yes 5_050719P (meta-genome)   8 6
No Yes 5_Below_upper_mesopelagic (meta-genome)   10 6
No Yes 6_Upper_euphotic (meta-genome)   25 16
No Yes 7_Oxygen_minimum_layer (meta-genome)   13 11
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   12 12
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   4 3
No Yes Combined (meta-genome)   14 13
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   11 11
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   6 5
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   3 1
No Yes Dump bottom (Dump bottom) (meta-genome)   64 58
No Yes Dump top (Dump top) (meta-genome)   34 32
No Yes Endophytic microbiome from Rice (meta-genome)   6 5
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   40 26
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   14 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   22 11
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   14 8
No Yes Fungus garden combined (combined) (meta-genome)   6 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   11 9
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   11 11
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   7 5
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   15 9
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   11 9
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   17 11
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   16 11
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   6 4
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   5 4
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   5 5
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica), fosmids (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   16 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   11 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   13 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   5 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   15 5
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   24 22
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   31 31
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   13 9
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   309 197
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   75 49
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   8 6
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   98 65
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   86 53
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   43 25
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   29 27
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   31 28
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   5 3
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   396556 68391
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   86 60
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   5 3
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   55 35
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   24 17
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   29 17
No Yes Single-cell genome from subgingival tooth surface TM7a (meta-genome)   2 1
No Yes Single-cell genome from subgingival tooth surface TM7c (meta-genome)   2 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   38 15
No Yes Sludge/US, Jazz Assembly (meta-genome)   20 8
No Yes Sludge/US, Phrap Assembly (meta-genome)   32 15
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   49 34
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   114 104
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   64 58
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   42 42
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   50 45
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   73 65
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   70 64
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   10 6
No Yes STRING v9.0.5 (STRING)   22301 3338
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   13 12
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   44 43
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   19 18
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   232798 44369
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   37 23
No Yes Global Ocean Sampling Expedition (GOS)   6615 3717
No Yes NCBI plasmid sequences (Plasmids)   261 57
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   29 14
No Yes Protein Data Bank (all PDB sequenc)   731 295
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   963 961
No Yes TargetDB (Targets)   253 77

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