SUPERFAMILY 1.75 HMM library and genome assignments server

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CBD9-like superfamily domain assignments
in
Monodelphis domestica 69_5


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Select to display   Genome       Domains   Proteins
No Yes ALL   30779 30779
No Yes Saccoglossus kowalevskii v3.0   6 6
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 10 10
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Adineta vaga   13 13
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 8 4
No Yes Lottia gigantea Owl limpet 7 6
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Daphnia pulex Common water flea 2 2
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 2 1
No Yes Onchocerca volvulus 22   2 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   5 4
No Yes Caenorhabditis brenneri   5 5
No Yes Caenorhabditis remanei   6 6
No Yes Caenorhabditis elegans 76_235 Roundworm 5 5
No Yes Caenorhabditis briggsae 2   4 4
No Yes Acropora digitifera v1.0   5 5
No Yes Nematostella vectensis 1.0 Starlet sea anemone 6 6
No Yes Amphimedon queenslandica   7 7
No Yes Trichoplax adhaerens   12 10
No Yes Proterospongia sp. ATCC 50818   3 3
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   2 2
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   3 3
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 2
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   4 4
No Yes Sphaerobolus stellatus v1.0   6 6
No Yes Piloderma croceum F 1598 v1.0   2 2
No Yes Serpula lacrymans var. lacrymans S7.9   4 4
No Yes Coniophora puteana   4 4
No Yes Hydnomerulius pinastri v2.0   4 4
No Yes Coprinopsis cinerea okayama7 130 v3   8 8
No Yes Pleurotus ostreatus Oyster mushroom 3 3
No Yes Amanita thiersii Skay4041 v1.0   3 3
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   4 4
No Yes Hebeloma cylindrosporum h7 v2.0   2 2
No Yes Laccaria bicolor S238N-H82   4 4
No Yes Agaricus bisporus var. bisporus   2 2
No Yes Schizophyllum commune   4 4
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 3
No Yes Heterobasidion annosum   3 3
No Yes Punctularia strigosozonata v1.0   3 3
No Yes Sebacina vermifera MAFF 305830 v1.0   7 7
No Yes Fomitiporia mediterranea v1.0   3 3
No Yes Tulasnella calospora AL13/4D v1.0   7 7
No Yes Phanerochaete chrysosporium RP-78 2.1   3 3
No Yes Dichomitus squalens   4 4
No Yes Trametes versicolor v1.0   3 3
No Yes Tremella mesenterica Witches' butter 2 2
No Yes Daldinia eschscholzii EC12 v1.0   9 9
No Yes Apiospora montagnei NRRL 25634 v1.0   11 11
No Yes Magnaporthe poae ATCC 64411 22   9 9
No Yes Magnaporthe grisea 70-15   10 10
No Yes Podospora anserina   11 11
No Yes Sporotrichum thermophile ATCC 42464   8 8
No Yes Thielavia terrestris NRRL 8126   8 8
No Yes Chaetomium globosum CBS 148.51   10 10
No Yes Neurospora tetrasperma   7 7
No Yes Neurospora discreta FGSC 8579   7 7
No Yes Neurospora crassa OR74A   9 8
No Yes Cryphonectria parasitica Chestnut blight fungus 5 5
No Yes Verticillium albo-atrum VaMs.102   5 5
No Yes Verticillium dahliae VdLs.17   4 4
No Yes Acremonium alcalophilumv 1.0   3 3
No Yes Glomerella graminicola 22   8 8
No Yes Fusarium graminearum   8 8
No Yes Nectria haematococca mpVI   7 7
No Yes Fusarium oxysporum f. sp. lycopersici 4286   15 15
No Yes Fusarium verticillioides 7600   9 9
No Yes Trichoderma asperellum CBS 433.97 v1.0   5 5
No Yes Trichoderma atroviride   4 4
No Yes Trichoderma citrinoviride v1.0   4 4
No Yes Trichoderma reesei 1.2   3 3
No Yes Trichoderma virens Gv29-8   4 4
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   4 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   5 5
No Yes Amorphotheca resinae v1.0 Creosote fungus 3 3
No Yes Botrytis cinerea B05.10   7 7
No Yes Sclerotinia sclerotiorum   5 5
No Yes Didymella exigua CBS 183.55 v1.0   6 6
No Yes Leptosphaeria maculans 22   8 8
No Yes Setosphaeria turcica v1.0   8 8
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   7 7
No Yes Cochliobolus victoriae FI3 v1.0   7 7
No Yes Cochliobolus carbonum 26-R-13 v1.0   7 7
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 7 7
No Yes Alternaria brassicicola   8 8
No Yes Cochliobolus lunatus m118 v2.0   8 8
No Yes Pyrenophora teres f. teres 22   6 6
No Yes Pyrenophora tritici-repentis   7 7
No Yes Stagonospora nodorum   9 9
No Yes Mycosphaerella graminicola IPO323   7 7
No Yes Zasmidium cellare ATCC 36951 v1.0   5 5
No Yes Dothistroma septosporum   5 5
No Yes Septoria musiva v1.0   4 4
No Yes Mycosphaerella fijiensis CIRAD86   5 5
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Paracoccidioides brasiliensis Pb18   3 3
No Yes Coccidioides posadasii RMSCC 3488   3 3
No Yes Coccidioides immitis RS   3 3
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   3 3
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   2 2
No Yes Trichophyton verrucosum HKI 0517   2 2
No Yes Arthroderma benhamiae CBS 112371   2 2
No Yes Trichophyton tonsurans CBS 112818   2 2
No Yes Trichophyton rubrum CBS 118892   2 2
No Yes Uncinocarpus reesii 1704   3 3
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   4 4
No Yes Aspergillus fumigatus Af293   4 4
No Yes Aspergillus brasiliensis v1.0   5 5
No Yes Aspergillus nidulans FGSC A4   5 5
No Yes Aspergillus sydowii v1.0   6 6
No Yes Aspergillus versicolor v1.0   6 6
No Yes Aspergillus glaucus   3 3
No Yes Aspergillus carbonarius ITEM 5010   4 4
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   8 8
No Yes Aspergillus tubingensis v1.0   4 4
No Yes Aspergillus wentii v1.0   4 4
No Yes Aspergillus oryzae RIB40   6 6
No Yes Aspergillus niger 22   4 4
No Yes Aspergillus niger ATCC 1015   4 4
No Yes Aspergillus flavus NRRL3357   7 7
No Yes Aspergillus clavatus NRRL 1   4 4
No Yes Penicillium marneffei ATCC 18224   6 6
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Catenaria anguillulae PL171 v1.0   5 5
No Yes Allomyces macrogynus ATCC 38327   16 9
No Yes Spizellomyces punctatus DAOM BR117   6 6
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 5 5
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 2 2
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum aestivum 22 Bread wheat 3 3
No Yes Aegilops tauschii 22   2 2
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Sorghum bicolor Sorghum 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   9 8
No Yes Bigelowiella natans CCMP2755 22   4 4
No Yes Cyanophora paradoxa   2 2
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   3 3
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   2 2
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   2 2
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   3 3
No Yes Thalassiosira pseudonana CCMP1335   3 3
No Yes Paramecium tetraurelia   5 5
No Yes Tetrahymena thermophila SB210 1   7 7
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Symbiodinium minutum clade B1 v1.2   4 4
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Thermobaculum terrenum ATCC BAA-798   3 3
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   2 2
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Beutenbergia cavernae DSM 12333   3 2
No Yes Microbacterium testaceum StLB037   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   2 2
No Yes Cellulomonas flavigena DSM 20109   2 2
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   3 3
No Yes Anaerolinea thermophila UNI-1   3 3
No Yes Roseiflexus sp. RS-1   2 2
No Yes Roseiflexus castenholzii DSM 13941   2 2
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Truepera radiovictrix DSM 17093   2 2
No Yes Deinococcus gobiensis I-0   2 2
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   2 2
No Yes Deinococcus geothermalis DSM 11300   2 2
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Marinithermus hydrothermalis DSM 14884   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   3 2
No Yes Thermus scotoductus SA-01   1 1
No Yes Thermus thermophilus HB27   3 2
No Yes Clostridium clariflavum DSM 19732   10 5
No Yes Clostridium cellulolyticum H10   5 5
No Yes Ethanoligenens harbinense YUAN-3   1 1
No Yes Thermincola potens JR   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Clostridium sp. BNL1100   4 4
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Mahella australiensis 50-1 BON   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   3 2
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor owensensis OL   2 1
No Yes Caldicellulosiruptor lactoaceticus 6A   2 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   3 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   2 1
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   2 1
No Yes Coprothermobacter proteolyticus DSM 5265   2 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   2 1
No Yes Thermoanaerobacter italicus Ab9   2 1
No Yes Acetohalobium arabaticum DSM 5501   1 1
No Yes Halothermothrix orenii H 168   1 1
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Halanaerobium praevalens DSM 2228   1 1
No Yes Paenibacillus sp. JDR-2   9 7
No Yes Paenibacillus mucilaginosus 3016   5 4
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Gemmatimonas aurantiaca T-27   7 7
No Yes Melioribacter roseus P3M   3 3
No Yes Ignavibacterium album JCM 16511   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   6 6
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   7 6
No Yes Chitinophaga pinensis DSM 2588   4 3
No Yes Salinibacter ruber M8   1 1
No Yes Rhodothermus marinus DSM 4252   3 3
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Cyclobacterium marinum DSM 745   7 7
No Yes Marivirga tractuosa DSM 4126   3 3
No Yes Fibrella aestuarina   4 4
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   3 3
No Yes Cytophaga hutchinsonii ATCC 33406   10 10
No Yes Spirosoma linguale DSM 74   6 6
No Yes Runella slithyformis DSM 19594   7 7
No Yes Parabacteroides distasonis ATCC 8503   3 3
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Paludibacter propionicigenes WB4   2 2
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Bacteroides sp. CF50   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Bacteroides helcogenes P 36-108   2 2
No Yes Bacteroides vulgatus ATCC 8482   2 2
No Yes Bacteroides thetaiotaomicron VPI-5482   2 2
No Yes Bacteroides fragilis YCH46   2 2
No Yes Pedobacter saltans DSM 12145   2 2
No Yes Solitalea canadensis DSM 3403   3 3
No Yes Pedobacter heparinus DSM 2366   2 2
No Yes Sphingobacterium sp. 21   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Krokinobacter sp. 4H-3-7-5   4 4
No Yes Gramella forsetii KT0803   2 2
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Maribacter sp. HTCC2170   11 11
No Yes Robiginitalea biformata HTCC2501   5 5
No Yes Croceibacter atlanticus HTCC2559   2 2
No Yes Aequorivita sublithincola DSM 14238   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   3 3
No Yes Cellulophaga algicola DSM 14237   4 4
No Yes Cellulophaga lytica DSM 7489   3 3
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Polaribacter sp. MED152   2 2
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium johnsoniae UW101   3 3
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Parachlamydia acanthamoebae UV-7   1 1
No Yes Simkania negevensis Z   1 1
No Yes Phycisphaera mikurensis NBRC 102666   4 4
No Yes Isosphaera pallida ATCC 43644   2 2
No Yes Planctomyces brasiliensis DSM 5305   3 3
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Pirellula staleyi DSM 6068   2 2
No Yes Methylacidiphilum infernorum V4   2 1
No Yes Opitutus terrae PB90-1   4 3
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Sphaerochaeta coccoides DSM 17374   1 1
No Yes Treponema azotonutricium ZAS-9   2 2
No Yes Treponema primitia ZAS-2   1 1
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Flexistipes sinusarabici DSM 4947   2 2
No Yes Marinitoga piezophila KA3   1 1
No Yes Petrotoga mobilis SJ95   3 2
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Kosmotoga olearia TBF 19.5.1   7 6
No Yes Fervidobacterium pennivorans DSM 9078   4 4
No Yes Fervidobacterium nodosum Rt17-B1   2 2
No Yes Thermosipho melanesiensis BI429   1 1
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga thermarum DSM 5069   2 1
No Yes Thermotoga sp. RQ2   5 3
No Yes Thermotoga naphthophila RKU-10   4 3
No Yes Thermotoga petrophila RKU-1   4 3
No Yes Thermotoga neapolitana DSM 4359   6 4
No Yes Thermotoga maritima MSB8   3 2
No Yes Dictyoglomus turgidum DSM 6724   6 5
No Yes Dictyoglomus thermophilum H-6-12   3 3
No Yes Caldisericum exile AZM16c01   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   3 3
No Yes Granulicella tundricola MP5ACTX9   2 2
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   3 3
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfotalea psychrophila LSv54   2 2
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Haliangium ochraceum DSM 14365   5 5
No Yes Sorangium cellulosum 'So ce 56'   3 3
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   2 2
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Corallococcus coralloides DSM 2259   6 6
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   2 2
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Photobacterium profundum SS9   3 3
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   3 3
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   2 2
No Yes Shewanella pealeana ATCC 700345   2 2
No Yes Shewanella oneidensis MR-1   2 2
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   2 2
No Yes Shewanella amazonensis SB2B   2 2
No Yes Shewanella violacea DSS12   2 2
No Yes Shewanella frigidimarina NCIMB 400   3 3
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   4 4
No Yes Pseudoalteromonas sp. SM9913   3 3
No Yes Pseudoalteromonas atlantica T6c   2 2
No Yes Pseudoalteromonas haloplanktis TAC125   2 2
No Yes Glaciecola sp. 4H-3-7+YE-5   2 2
No Yes Glaciecola nitratireducens FR1064   3 3
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   2 2
No Yes Alteromonas macleodii str. 'Deep ecotype'   2 2
No Yes Kangiella koreensis DSM 16069   2 2
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Rhodanobacter denitrificans   2 2
No Yes Francisella sp. TX077308   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Thermogladius cellulolyticus 1633   3 2
No Yes Ignisphaera aggregans DSM 17230   3 3
No Yes Thermosphaera aggregans DSM 11486   2 2
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Staphylothermus marinus F1   3 2
No Yes Desulfurococcus fermentans DSM 16532   3 3
No Yes Desulfurococcus kamchatkensis 1221n   3 3
No Yes Desulfurococcus mucosus DSM 2162   2 2
No Yes Thermofilum sp. 1910b   2 2
No Yes Pyrobaculum sp. 1860   2 2
No Yes Pyrobaculum calidifontis JCM 11548   3 3
No Yes Pyrobaculum arsenaticum DSM 13514   2 2
No Yes Pyrobaculum oguniense TE7   2 2
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Pyrobaculum aerophilum str. IM2   2 2
No Yes Pyrobaculum islandicum DSM 4184   2 2
No Yes Thermococcus sp. 4557   5 2
No Yes Thermococcus onnurineus NA1   6 3
No Yes Thermococcus kodakarensis KOD1   2 2
No Yes Thermococcus gammatolerans EJ3   5 4
No Yes Thermococcus barophilus MP   5 2
No Yes Pyrococcus sp. ST04   5 2
No Yes Pyrococcus yayanosii CH1   4 2
No Yes Pyrococcus abyssi GE5   6 2
No Yes Pyrococcus furiosus COM1   5 2
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Halopiger xanaduensis SH-6   2 2
No Yes Haloterrigena turkmenica DSM 5511   3 3
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 5 5
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   3 3
No Yes Paracoccidioides brasiliensis Pb03   3 3
No Yes Coccidioides posadasii str. Silveira   3 3
No Yes Coccidioides immitis RMSCC 3703   2 2
No Yes Coccidioides immitis RMSCC 2394   3 3
No Yes Coccidioides immitis H538.4   3 3
No Yes Ajellomyces dermatitidis ER-3   3 3
No Yes Histoplasma capsulatum H143   3 3
No Yes Histoplasma capsulatum H88   3 3
No Yes Histoplasma capsulatum G186AR   3 3
No Yes Aspergillus fumigatus A1163   4 4
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   3 3
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Bifidobacterium animalis subsp. lactis ATCC 27673   1 1
No Yes Chthonomonas calidirosea T49   5 4
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   3 2
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Thermus thermophilus HB8   3 2
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Roseburia intestinalis XB6B4   2 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   2 1
No Yes Halobacteroides halobius DSM 5150   2 2
No Yes Thermobacillus composti KWC4   4 4
No Yes Paenibacillus sp. Y412MC10   5 4
No Yes Paenibacillus mucilaginosus KNP414   7 6
No Yes Paenibacillus mucilaginosus K02   7 6
No Yes Amphibacillus xylanus NBRC 15112   3 3
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   2 2
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   7 7
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   1 1
No Yes Alistipes shahii WAL 8301   1 1
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Bacteroides fragilis 638R   2 2
No Yes Bacteroides fragilis NCTC 9343   2 2
No Yes Nonlabens dokdonensis DSW-6   2 2
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Singulisphaera acidiphila DSM 18658   5 5
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Thermotoga maritima MSB8   3 2
No Yes Desulfocapsa sulfexigens DSM 10523   2 2
No Yes Sorangium cellulosum So0157-2   3 3
No Yes Anaeromyxobacter sp. K   2 2
No Yes Anaeromyxobacter dehalogenans 2CP-C   2 2
No Yes Myxococcus stipitatus DSM 14675   3 3
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella sp. ANA-3   2 2
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   2 2
No Yes Shewanella putrefaciens 200   1 1
No Yes Glaciecola psychrophila 170   6 6
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   3 3
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   2 2
No Yes Alteromonas macleodii AltDE1   3 3
No Yes Alteromonas macleodii str. 'English Channel 673'   2 2
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   2 2
No Yes Alteromonas macleodii str. 'Black Sea 11'   2 2
No Yes Alteromonas macleodii ATCC 27126   2 2
No Yes Thermococcus sp. AM4   4 3
No Yes Thermococcus sp. CL1   7 4
No Yes Thermococcus litoralis DSM 5473   2 2
No Yes Pyrococcus furiosus DSM 3638   5 4
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   4 4
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   6 6
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 10 10
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes 1_050719N (meta-genome)   11 11
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   22 22
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   19 19
No Yes 3_Below_base_of_euphotic (meta-genome)   7 7
No Yes 4_050719Q (meta-genome)   21 21
No Yes 4_Deep_abyss (meta-genome)   10 10
No Yes 5_050719P (meta-genome)   26 26
No Yes 5_Below_upper_mesopelagic (meta-genome)   7 7
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   10 10
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Bath Hot Springs, filamentous community (meta-genome)   8 8
No Yes Bath Hot Springs, planktonic community (meta-genome)   9 9
No Yes Combined (meta-genome)   4 4
No Yes Crater Hills (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   6 6
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   32 31
No Yes Dump top (Dump top) (meta-genome)   17 17
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   13 13
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   6 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   7 7
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   18 18
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   10 10
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   11 11
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   8 7
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   11 11
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   6 6
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   17 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   41 41
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   18 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   17 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   19 19
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   4 4
No Yes Human Gut Community Subject 8 (meta-genome)   2 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   19 19
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   13 13
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   99 99
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   38 38
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   22 22
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   28 28
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   7 7
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   29 29
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   13 13
No Yes Mouse Gut Community lean1 (meta-genome)   1 1
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   10194 9822
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   21 21
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   7 7
No Yes Sludge/US, Jazz Assembly (meta-genome)   7 7
No Yes Sludge/US, Phrap Assembly (meta-genome)   6 6
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   51 51
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   83 83
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   45 45
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   21 21
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   33 33
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   54 54
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   519 482
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   4 4
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   63 63
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   17 17
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   14444 13959
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   3 3
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   32 31
No Yes Global Ocean Sampling Expedition (GOS)   1224 1221
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes NCBI viral sequences (Viral)   2 1
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   22 22
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   50 50
No Yes TargetDB (Targets)   27 23

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