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Starch-binding domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 33 significant domains in 33 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1cdgA   7e-35   0.000000868   583-685   1d3c A:584-686  
1cgtA   1.18e-32   0.000000711   581-684   1cgt A:580-684  
1cgvA   7e-35   0.000000868   583-685   1d3c A:584-686  
1cgwA   7e-35   0.000000868   583-685   1d3c A:584-686  
1cgxA   7e-35   0.000000868   583-685   1d3c A:584-686  
1cgyA   7e-35   0.000000868   583-685   1d3c A:584-686  
1ciuA   4.67e-34   0.000000683   580-682   1ciu A:579-683  
1cqyA   1.65e-25   0.00000146   2-99   1cqy A:  
1cxlA   7e-35   0.000000868   583-685   1d3c A:584-686  
1cygA   5.49e-36   0.000000684   576-679   1cyg A:575-680  
1d3cA   7e-35   0.000000868   583-685   1d3c A:584-686  
1d7fA   3.29e-35   0.00000072   583-685   1pam A:583-686  
1dtuA   7e-35   0.000000868   583-685   1d3c A:584-686  
1eo5A   7e-35   0.000000868   583-685   1d3c A:584-686  
1kckA   7e-35   0.000000868   583-685   1d3c A:584-686  
1kclA   7e-35   0.000000868   583-685   1d3c A:584-686  
1kulA   9.61e-36   0.000000577   1-108   1kul A:  
1ot1A   7e-35   0.000000868   583-685   1d3c A:584-686  
1ot2A   7e-35   0.000000868   583-685   1d3c A:584-686  
1pamA   3.29e-35   0.00000072   583-685   1pam A:583-686  
1pezA   3.57e-34   0.000000967   583-685   1d3c A:584-686  
1pj9A   7e-35   0.000000868   583-685   1d3c A:584-686  
1qhoA   4.26e-31   0.000000475   578-686   1qho A:577-686  
1tcmA   4.39e-32   0.00000104   583-685   1d3c A:584-686  
1uksA   3.29e-35   0.00000072   583-685   1pam A:583-686  
1uktA   3.29e-35   0.00000072   583-685   1pam A:583-686  
1v3jA   3.29e-35   0.00000072   583-685   1pam A:583-686  
1v3kA   3.29e-35   0.00000072   583-685   1pam A:583-686  
3bmvA   4.67e-34   0.000000683   580-682   1ciu A:579-683  
4cgtA   1.17e-32   0.000000711   575-678   1cgt A:580-684  
5cgtA   1.18e-32   0.000000711   581-684   1cgt A:580-684  
6cgtA   1.18e-32   0.000000711   581-684   1cgt A:580-684  
9cgtA   1.18e-32   0.000000711   581-684   1cgt A:580-684  
 
Weak hits:
1gcyA   1.25e-22   0.00034   428-523   1pam A:583-686  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2148 2148
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   2 2
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   2 2
No Yes Didymella exigua CBS 183.55 v1.0   2 2
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   3 3
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   3 3
No Yes Penicillium chrysogenum v1.0   3 3
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   3 3
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   4 4
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   5 5
No Yes Penicillium marneffei ATCC 18224   3 3
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   1 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   1 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   3 3
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus suis T15   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes NCBI 2017_08 genome   554 554
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   40 40
No Yes Uniprot 2018_03 genome   865 865
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   33 33
No Yes Protein Data Bank (all PDB sequenc)   79 79
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   311 311

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