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Carboxypeptidase regulatory domain-like superfamily domain assignments
in
Deinococcus geothermalis DSM 11300

Assignment details

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Deinococcus geothermalis DSM 11300 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|94985552|ref|YP_604916.1|   0.000000000381   196-255   Carboxypeptidase regulatory domain  
gi|94985846|ref|YP_605210.1|   0.0000000235   740-807   Carboxypeptidase regulatory domain  
 
Weak hits:
gi|94984567|ref|YP_603931.1|   0.0169   98-122   Pre-dockerin domain  
gi|94984921|ref|YP_604285.1|   0.0235   280-337   Carboxypeptidase regulatory domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   340976 340976
No Yes Homo sapiens 76_38 Human 50 46
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 16 12
No Yes Gorilla gorilla 76_3.1 Western gorilla 14 14
No Yes Pongo abelii 76_2 Sumatran orangutan 15 13
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 15 13
No Yes Papio anubis 76 Olive baboon 18 16
No Yes Macaca mulatta 76_1 Rhesus monkey 18 18
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 34 28
No Yes Otolemur garnettii 76_3 Small-eared galago 16 14
No Yes Microcebus murinus 76_1 Gray mouse lemur 13 12
No Yes Rattus norvegicus 76_5.0 Norway rat 16 14
No Yes Mus musculus 76_38 House mouse 21 19
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 13 12
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 11
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 13
No Yes Cavia porcellus 76_3 Domestic guinea pig 15 13
No Yes Oryctolagus cuniculus 76_2 Rabbit 21 19
No Yes Ochotona princeps 76 American pika 6 5
No Yes Tupaia belangeri 76 Northern tree shrew 10 8
No Yes Sus scrofa 76_10.2 Pig 16 14
No Yes Bos taurus 76_3.1 Cattle 18 17
No Yes Ovis aries 76_3.1 Sheep 17 15
No Yes Vicugna pacos 76_1 Alpaca 5 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 13
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 13
No Yes Ailuropoda melanoleuca 76_1 Giant panda 20 16
No Yes Canis familiaris 76_3.1 Dog 19 17
No Yes Felis catus 76_6.2 Domestic cat 16 14
No Yes Equus caballus 76_2 Horse 22 20
No Yes Myotis lucifugus 76_2.0 Little brown bat 14 12
No Yes Pteropus vampyrus 76_1 Large flying fox 14 12
No Yes Sorex araneus 76_1 European shrew 10 8
No Yes Erinaceus europaeus 76 Western European hedgehog 9 7
No Yes Procavia capensis 76_1 Cape rock hyrax 14 12
No Yes Loxodonta africana 76_3 African savanna elephant 23 19
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 8
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 12
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 7
No Yes Macropus eugenii 76_1.0 Tammar wallaby 11 10
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 14 13
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 18 16
No Yes Ornithorhynchus anatinus 76_5 Platypus 15 13
No Yes Saccoglossus kowalevskii v3.0   16 11
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 76_2 Turkey 15 14
No Yes Gallus gallus 76_4 Chicken 18 16
No Yes Anas platyrhynchos 76_1.0 Mallard 14 12
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 14 12
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 16 14
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 16 14
No Yes Anolis carolinensis 76_2.0 Green anole 13 13
No Yes Xenopus laevis African clawed frog 6 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 17 16
No Yes Latimeria chalumnae 76_1 Coelacanth 14 12
No Yes Lepisosteus oculatus 76 Spotted gar 23 20
No Yes Gadus morhua 76_1 Atlantic cod 17 15
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 16 14
No Yes Takifugu rubripes 76_4 Torafugu 67 65
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 22 20
No Yes Oryzias latipes 76_1 Japanese medaka 30 28
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 19 18
No Yes Poecilia formosa 76 Amazon molly 21 19
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 31 27
No Yes Astyanax mexicanus 76 Mexican tetra 22 18
No Yes Danio rerio 76_9 Zebrafish 38 32
No Yes Oikopleura dioica   5 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 15 15
No Yes Ciona intestinalis 76 Vase tunicate 4 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 10 8
No Yes Adineta vaga   17 13
No Yes Octopus bimaculoides 280   11 8
No Yes Crassostrea gigas 22 Pacific oyster 9 4
No Yes Lottia gigantea Owl limpet 5 3
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   6 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 4
No Yes Heliconius melpomene Postman butterfly 6 3
No Yes Bombyx mori Domestic silkworm 4 4
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 24 15
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 6 3
No Yes Linepithema humile v1.1 Argentine ant 5 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 5 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 3
No Yes Atta cephalotes v1.1   6 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 6 3
No Yes Lucilia cuprina Australian sheep blowfly 5 2
No Yes Drosophila grimshawi 1.3   5 2
No Yes Drosophila willistoni 1.3   6 3
No Yes Drosophila pseudoobscura 2.13   6 3
No Yes Drosophila persimilis 1.3   6 3
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   5 2
No Yes Drosophila simulans 1.3   5 2
No Yes Drosophila sechellia 1.3   5 2
No Yes Drosophila melanogaster 76_5 Fruit fly 34 16
No Yes Drosophila erecta 1.3   6 3
No Yes Drosophila ananassae 1.3   5 2
No Yes Drosophila virilis 1.2   6 3
No Yes Drosophila mojavensis 1.3   5 2
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 2
No Yes Anopheles darlingi 22 American malaria mosquito 5 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 5 2
No Yes Tribolium castaneum 3.0 Red flour beetle 9 7
No Yes Pediculus humanus corporis (Early assembly) Human body louse 6 5
No Yes Acyrthosiphon pisum Pea aphid 6 4
No Yes Rhodnius prolixus 22   8 7
No Yes Daphnia pulex Common water flea 10 8
No Yes Strigamia maritima 22   8 5
No Yes Sarcoptes scabiei   7 6
No Yes Tetranychus urticae Two-spotted spider mite 7 5
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 7
No Yes Pristionchus pacificus   3 3
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   4 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   3 3
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 5 5
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 3 3
No Yes Thelohanellus kitauei   2 2
No Yes Acropora digitifera v1.0   9 6
No Yes Nematostella vectensis 1.0 Starlet sea anemone 11 9
No Yes Hydra vulgaris   6 4
No Yes Amphimedon queenslandica   3 2
No Yes Trichoplax adhaerens   8 8
No Yes Proterospongia sp. ATCC 50818   4 2
No Yes Monosiga brevicollis   6 5
No Yes Sphaeroforma arctica JP610   19 12
No Yes Capsaspora owczarzaki ATCC 30864   4 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   2 2
No Yes Selaginella moellendorffii   8 6
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   5 5
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 5 5
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   2 2
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 2 2
No Yes Medicago truncatula Barrel medic 2 2
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 4 4
No Yes Cucumis sativus v122 Cucumber 3 3
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 3 3
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 4 3
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Actinidia chinensis Hongyang   2 1
No Yes Aquilegia coerulea v195   6 6
No Yes Triticum aestivum 22 Bread wheat 4 4
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   3 3
No Yes Oryza nivara 22   2 2
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 4 4
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 5 5
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   2 2
No Yes Physcomitrella patens   4 4
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Cyanophora paradoxa   2 2
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Paramecium tetraurelia   3 3
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Symbiodinium minutum clade B1 v1.2   2 2
No Yes Naegleria gruberi   4 4
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   3 1
No Yes Thermobaculum terrenum ATCC BAA-798   4 4
No Yes Leptolyngbya sp. PCC 7376   3 2
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Halothece sp. PCC 7418   1 1
No Yes Gloeobacter violaceus PCC 7421   7 7
No Yes Rivularia sp. PCC 7116   2 2
No Yes Calothrix sp. PCC 7507   2 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   2 2
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Ilumatobacter coccineus   2 2
No Yes Nakamurella multipartita DSM 44233   4 3
No Yes Kineococcus radiotolerans SRS30216   3 3
No Yes Catenulispora acidiphila DSM 44928   4 2
No Yes Stackebrandtia nassauensis DSM 44728   3 2
No Yes Thermobifida fusca YX   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Streptomyces coelicolor A3(2)   7 6
No Yes Streptomyces sp. PAMC26508   4 3
No Yes Streptomyces flavogriseus ATCC 33331   4 3
No Yes Streptomyces sp. SirexAA-E   4 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   5 4
No Yes Streptomyces bingchenggensis BCW-1   8 5
No Yes Streptomyces violaceusniger Tu 4113   8 5
No Yes Streptomyces avermitilis MA-4680   7 6
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   10 5
No Yes Streptomyces scabiei 87.22   3 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   13 10
No Yes Actinosynnema mirum DSM 43827   4 3
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Pseudonocardia dioxanivorans CB1190   9 7
No Yes Saccharopolyspora erythraea NRRL 2338   2 1
No Yes Amycolatopsis mediterranei U32   4 2
No Yes Kribbella flavida DSM 17836   4 2
No Yes Nocardioides sp. JS614   2 2
No Yes Propionibacterium propionicum F0230a   1 1
No Yes Microlunatus phosphovorus NM-1   5 5
No Yes Salinispora arenicola CNS-205   2 2
No Yes Salinispora tropica CNB-440   3 3
No Yes Verrucosispora maris AB-18-032   4 2
No Yes Micromonospora sp. L5   7 4
No Yes Micromonospora aurantiaca ATCC 27029   7 4
No Yes Actinoplanes sp. N902-109   11 5
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   3 3
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   2 2
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium avium 104   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium canettii CIPT 140010059   1 1
No Yes Mycobacterium africanum GM041182   2 2
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   1 1
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium leprae Br4923   1 1
No Yes Corynebacterium efficiens YS-314   2 1
No Yes Sanguibacter keddieii DSM 10542   6 4
No Yes Beutenbergia cavernae DSM 12333   5 2
No Yes Microbacterium testaceum StLB037   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Cellulomonas fimi ATCC 484   3 2
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   2 2
No Yes Arthrobacter aurescens TC1   2 2
No Yes Arthrobacter sp. Rue61a   2 2
No Yes Arthrobacter sp. FB24   2 2
No Yes Renibacterium salmoninarum ATCC 33209   2 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Anaerolinea thermophila UNI-1   2 2
No Yes Thermomicrobium roseum DSM 5159   2 1
No Yes Sphaerobacter thermophilus DSM 20745   2 1
No Yes Herpetosiphon aurantiacus DSM 785   16 9
No Yes Roseiflexus sp. RS-1   7 5
No Yes Roseiflexus castenholzii DSM 13941   6 4
No Yes Chloroflexus sp. MS-G   5 3
No Yes Chloroflexus sp. Y-400-fl   7 4
No Yes Chloroflexus aggregans DSM 9485   6 3
No Yes Chloroflexus aurantiacus J-10-fl   7 4
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   2 2
No Yes Deinococcus maricopensis DSM 21211   2 2
No Yes Deinococcus geothermalis DSM 11300   2 2
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Oceanithermus profundus DSM 14977   3 3
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   4 3
No Yes Symbiobacterium thermophilum IAM 14863   12 3
No Yes Clostridium clariflavum DSM 19732   7 7
No Yes Clostridium thermocellum ATCC 27405   4 4
No Yes Ethanoligenens harbinense YUAN-3   2 2
No Yes Oscillibacter valericigenes Sjm18-20   3 2
No Yes Thermincola potens JR   2 2
No Yes Desulfosporosinus acidiphilus SJ4   7 6
No Yes Desulfosporosinus orientis DSM 765   4 4
No Yes Desulfitobacterium hafniense Y51   2 2
No Yes Desulfitobacterium dehalogenans ATCC 51507   5 3
No Yes Desulfotomaculum reducens MI-1   2 2
No Yes Desulfotomaculum acetoxidans DSM 771   3 3
No Yes Desulfotomaculum kuznetsovii DSM 6115   2 2
No Yes Desulfotomaculum carboxydivorans CO-1-SRB   3 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium saccharolyticum WM1   2 2
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Coprococcus sp. ART55/1   1 1
No Yes Roseburia hominis A2-183   2 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   1 1
No Yes Clostridium ljungdahlii DSM 13528   2 2
No Yes Clostridium kluyveri DSM 555   2 2
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Clostridium cellulovorans 743B   2 2
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Clostridium acetobutylicum ATCC 824   3 2
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Thermodesulfobium narugense DSM 14796   3 2
No Yes Halothermothrix orenii H 168   4 3
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Brevibacillus brevis NBRC 100599   9 2
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Paenibacillus terrae HPL-003   4 3
No Yes Paenibacillus mucilaginosus 3016   4 4
No Yes Paenibacillus polymyxa M1   5 3
No Yes Solibacillus silvestris StLB046   2 1
No Yes Oceanobacillus iheyensis HTE831   2 1
No Yes Bacillus sp. JS   2 1
No Yes Bacillus amyloliquefaciens FZB42   2 1
No Yes Bacillus atrophaeus 1942   2 1
No Yes Bacillus subtilis subsp. subtilis str. 168   3 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus pseudofirmus OF4   2 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Bacillus pumilus SAFR-032   2 1
No Yes Candidatus Cloacamonas acidaminovorans   13 8
No Yes Gemmatimonas aurantiaca T-27   42 41
No Yes Melioribacter roseus P3M   34 30
No Yes Ignavibacterium album JCM 16511   24 24
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Chlorobium phaeovibrioides DSM 265   2 2
No Yes Chlorobium limicola DSM 245   4 4
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chlorobium tepidum TLS   1 1
No Yes Chloroherpeton thalassium ATCC 35110   21 21
No Yes Prosthecochloris aestuarii DSM 271   4 4
No Yes Haliscomenobacter hydrossis DSM 1100   105 105
No Yes Saprospira grandis str. Lewin   30 29
No Yes Niastella koreensis GR20-10   196 192
No Yes Chitinophaga pinensis DSM 2588   174 174
No Yes Salinibacter ruber M8   29 27
No Yes Rhodothermus marinus DSM 4252   24 24
No Yes Flexibacter litoralis DSM 6794   37 36
No Yes Candidatus Amoebophilus asiaticus 5a2   1 1
No Yes Belliella baltica DSM 15883   34 34
No Yes Cyclobacterium marinum DSM 745   101 101
No Yes Marivirga tractuosa DSM 4126   53 53
No Yes Fibrella aestuarina   109 108
No Yes Leadbetterella byssophila DSM 17132   69 69
No Yes Dyadobacter fermentans DSM 18053   154 154
No Yes Cytophaga hutchinsonii ATCC 33406   15 15
No Yes Spirosoma linguale DSM 74   133 133
No Yes Runella slithyformis DSM 19594   100 100
No Yes Parabacteroides distasonis ATCC 8503   88 88
No Yes Tannerella forsythia ATCC 43037   69 69
No Yes Paludibacter propionicigenes WB4   53 53
No Yes Odoribacter splanchnicus DSM 20712   87 86
No Yes Bacteroides sp. CF50   37 37
No Yes Prevotella melaninogenica ATCC 25845   43 43
No Yes Prevotella intermedia 17   19 19
No Yes Prevotella denticola F0289   39 39
No Yes Prevotella ruminicola 23   49 49
No Yes Porphyromonas asaccharolytica DSM 20707   18 18
No Yes Porphyromonas gingivalis ATCC 33277   15 15
No Yes Alistipes finegoldii DSM 17242   43 42
No Yes Bacteroides salanitronis DSM 18170   45 45
No Yes Bacteroides helcogenes P 36-108   66 66
No Yes Bacteroides vulgatus ATCC 8482   101 101
No Yes Bacteroides thetaiotaomicron VPI-5482   127 127
No Yes Bacteroides fragilis YCH46   99 98
No Yes Pedobacter saltans DSM 12145   81 81
No Yes Solitalea canadensis DSM 3403   90 89
No Yes Pedobacter heparinus DSM 2366   128 128
No Yes Sphingobacterium sp. 21   160 159
No Yes Fluviicola taffensis DSM 16823   24 24
No Yes Owenweeksia hongkongensis DSM 17368   44 44
No Yes Zunongwangia profunda SM-A87   106 106
No Yes Krokinobacter sp. 4H-3-7-5   45 44
No Yes Gramella forsetii KT0803   48 48
No Yes Lacinutrix sp. 5H-3-7-4   41 41
No Yes Maribacter sp. HTCC2170   42 42
No Yes Robiginitalea biformata HTCC2501   32 32
No Yes Croceibacter atlanticus HTCC2559   38 38
No Yes Aequorivita sublithincola DSM 14238   35 34
No Yes Zobellia galactanivorans   123 123
No Yes Muricauda ruestringensis DSM 13258   57 57
No Yes Cellulophaga algicola DSM 14237   75 75
No Yes Cellulophaga lytica DSM 7489   75 75
No Yes Flavobacteriaceae bacterium 3519-10   10 10
No Yes Polaribacter sp. MED152   40 40
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   9 9
No Yes Ornithobacterium rhinotracheale DSM 15997   20 20
No Yes Capnocytophaga canimorsus Cc5   28 28
No Yes Capnocytophaga ochracea DSM 7271   38 38
No Yes Weeksella virosa DSM 16922   17 17
No Yes Flavobacterium indicum GPTSA100-9   28 28
No Yes Flavobacterium psychrophilum JIP02/86   29 29
No Yes Flavobacterium branchiophilum FL-15   31 31
No Yes Flavobacterium columnare ATCC 49512   21 21
No Yes Flavobacterium johnsoniae UW101   97 97
No Yes Fibrobacter succinogenes subsp. succinogenes S85   8 8
No Yes Isosphaera pallida ATCC 43644   7 7
No Yes Planctomyces brasiliensis DSM 5305   9 9
No Yes Planctomyces limnophilus DSM 3776   6 6
No Yes Rhodopirellula baltica SH 1   7 5
No Yes Pirellula staleyi DSM 6068   6 6
No Yes Coraliomargarita akajimensis DSM 45221   2 2
No Yes Opitutus terrae PB90-1   4 4
No Yes Turneriella parva DSM 21527   8 8
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   2 2
No Yes Leptospira interrogans serovar Lai str. IPAV   3 3
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   3 3
No Yes Treponema azotonutricium ZAS-9   1 1
No Yes Treponema primitia ZAS-2   2 2
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Treponema denticola ATCC 35405   2 2
No Yes Spirochaeta africana DSM 8902   2 2
No Yes Thermodesulfatator indicus DSM 15286   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Flexistipes sinusarabici DSM 4947   1 1
No Yes Marinitoga piezophila KA3   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Thermotoga lettingae TMO   4 4
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Dictyoglomus thermophilum H-6-12   2 2
No Yes Caldisericum exile AZM16c01   2 2
No Yes Candidatus Chloracidobacterium thermophilum B   17 17
No Yes Candidatus Solibacter usitatus Ellin6076   117 116
No Yes Granulicella tundricola MP5ACTX9   59 54
No Yes Granulicella mallensis MP5ACTX8   95 95
No Yes Candidatus Koribacter versatilis Ellin345   41 40
No Yes Terriglobus saanensis SP1PR4   64 64
No Yes Terriglobus roseus DSM 18391   63 63
No Yes Acidobacterium capsulatum ATCC 51196   35 35
No Yes Candidatus Nitrospira defluvii   4 4
No Yes Ilyobacter polytropus DSM 2926   2 2
No Yes Fusobacterium nucleatum subsp. nucleatum ATCC 25586   2 2
No Yes Bacteriovorax marinus SJ   1 1
No Yes Nautilia profundicola AmH   1 1
No Yes Nitratifractor salsuginis DSM 16511   2 2
No Yes Desulfarculus baarsii DSM 2075   4 3
No Yes Desulfobacca acetoxidans DSM 11109   3 3
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Syntrophobacter fumaroxidans MPOB   3 3
No Yes Desulfurivibrio alkaliphilus AHT2   3 3
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfatibacillum alkenivorans AK-01   9 9
No Yes Desulfococcus oleovorans Hxd3   4 4
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Lawsonia intracellularis PHE/MN1-00   1 1
No Yes Desulfovibrio alaskensis G20   2 2
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   1 1
No Yes Geobacter daltonii FRC-32   10 7
No Yes Geobacter uraniireducens Rf4   9 6
No Yes Geobacter lovleyi SZ   2 2
No Yes Geobacter sulfurreducens KN400   3 2
No Yes Geobacter metallireducens GS-15   5 4
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Haliangium ochraceum DSM 14365   18 13
No Yes Sorangium cellulosum 'So ce 56'   18 13
No Yes Anaeromyxobacter sp. Fw109-5   6 5
No Yes Anaeromyxobacter dehalogenans 2CP-1   7 5
No Yes Stigmatella aurantiaca DW4/3-1   23 17
No Yes Corallococcus coralloides DSM 2259   48 23
No Yes Myxococcus xanthus DK 1622   25 17
No Yes Myxococcus fulvus HW-1   19 13
No Yes Dechloromonas aromatica RCB   1 1
No Yes Azoarcus sp. BH72   1 1
No Yes Aromatoleum aromaticum EbN1   2 2
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia xenovorans LB400   2 2
No Yes Ralstonia eutropha JMP134   3 3
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia eutropha H16   2 2
No Yes Burkholderia thailandensis E264   3 3
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   2 2
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   3 3
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Nitrosospira multiformis ATCC 25196   2 2
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Methylotenera mobilis JLW8   1 1
No Yes Methylobacillus flagellatus KT   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Erythrobacter litoralis HTCC2594   2 2
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Maricaulis maris MCS10   2 2
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   3 3
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Saccharophagus degradans 2-40   4 4
No Yes Teredinibacter turnerae T7901   4 3
No Yes Cellvibrio japonicus Ueda107   6 5
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Psychromonas ingrahamii 37   5 2
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   4 4
No Yes Shewanella loihica PV-4   4 2
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   2 2
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Colwellia psychrerythraea 34H   5 5
No Yes Pseudoalteromonas sp. SM9913   2 2
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   3 3
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Alteromonas sp. SN2   5 5
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   2 2
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 2
No Yes Xanthomonas albilineans GPE PC73   2 2
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Xanthomonas campestris pv. campestris str. B100   2 2
No Yes Nitrosococcus halophilus Nc4   2 2
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   2 2
No Yes Shigella dysenteriae Sd197   2 2
No Yes Shigella boydii CDC 3083-94   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   2 2
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Candidatus Caldiarchaeum subterraneum   4 3
No Yes Cenarchaeum symbiosum A   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Pyrolobus fumarii 1A   7 3
No Yes Hyperthermus butylicus DSM 5456   1 1
No Yes Ignisphaera aggregans DSM 17230   2 2
No Yes Aeropyrum pernix K1   1 1
No Yes Ignicoccus hospitalis KIN4/I   3 1
No Yes Metallosphaera cuprina Ar-4   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Acidianus hospitalis W1   2 2
No Yes Sulfolobus tokodaii str. 7   3 3
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Sulfolobus acidocaldarius DSM 639   3 3
No Yes Thermofilum sp. 1910b   6 6
No Yes Thermofilum pendens Hrk 5   6 5
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes halophilic archaeon DL31   2 2
No Yes Methanocella arvoryzae MRE50   30 28
No Yes Methanocella conradii HZ254   18 14
No Yes Methanocella paludicola SANAE   26 24
No Yes Methanosaeta harundinacea 6Ac   3 2
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   2 2
No Yes Methanohalobium evestigatum Z-7303   2 2
No Yes Methanococcoides burtonii DSM 6242   2 2
No Yes Methanosarcina acetivorans C2A   7 7
No Yes Methanosarcina mazei Go1   7 7
No Yes Methanosarcina barkeri str. Fusaro   8 7
No Yes Methanohalophilus mahii DSM 5219   2 2
No Yes Methanosphaerula palustris E1-9c   11 5
No Yes Methanoregula boonei 6A8   3 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanocorpusculum labreanum Z   4 2
No Yes Methanoplanus petrolearius DSM 11571   7 5
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   3 3
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus veneficus SNP6   2 2
No Yes Archaeoglobus fulgidus DSM 4304   2 2
No Yes Thermococcus sp. 4557   2 2
No Yes Thermococcus kodakarensis KOD1   2 2
No Yes Thermococcus gammatolerans EJ3   4 4
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   2 2
No Yes Pyrococcus sp. ST04   2 2
No Yes Pyrococcus yayanosii CH1   3 3
No Yes Pyrococcus horikoshii OT3   2 2
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermoplasmatales archaeon BRNA1   2 2
No Yes Thermoplasma volcanium GSS1   5 3
No Yes Thermoplasma acidophilum DSM 1728   6 3
No Yes Picrophilus torridus DSM 9790   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   2 2
No Yes Halopiger xanaduensis SH-6   2 2
No Yes Haloterrigena turkmenica DSM 5511   4 2
No Yes Natrinema sp. J7-2   2 1
No Yes Natrialba magadii ATCC 43099   5 5
No Yes Halorubrum lacusprofundi ATCC 49239   2 2
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   3 3
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   5 3
No Yes Haloarcula hispanica ATCC 33960   3 2
No Yes Halalkalicoccus jeotgali B3   3 3
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   2 2
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes Methanothermus fervidus DSM 2088   1 1
No Yes Methanothermobacter marburgensis str. Marburg   8 5
No Yes Methanothermobacter thermautotrophicus str. Delta H   2 2
No Yes Methanosphaera stadtmanae DSM 3091   24 6
No Yes Methanobrevibacter sp. AbM4   2 2
No Yes Methanobrevibacter ruminantium M1   3 3
No Yes Methanobrevibacter smithii ATCC 35061   6 6
No Yes Complete genome sequence of Methanobacterium sp. Mb1   3 3
No Yes Aciduliprofundum sp. MAR08-339   6 3
No Yes Aciduliprofundum boonei T469   4 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 25 24
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 32 14
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 6 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   8 8
No Yes Calothrix parietina Calothrix sp. PCC 6303   3 3
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces albus J1074   5 4
No Yes Streptomyces rapamycinicus NRRL 5491   8 6
No Yes Streptomyces davawensis JCM 4913   7 6
No Yes Streptomyces fulvissimus DSM 40593   3 2
No Yes Streptomyces venezuelae ATCC 10712   3 3
No Yes Streptomyces collinus Tu 365   4 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   10 5
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   13 10
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   4 2
No Yes Amycolatopsis mediterranei S699   4 2
No Yes Amycolatopsis mediterranei S699   4 2
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Actinoplanes friuliensis DSM 7358   6 3
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   4 3
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   1 1
No Yes Mycobacterium indicus pranii MTCC 9506   1 1
No Yes Mycobacterium intracellulare MOTT-02   1 1
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   1 1
No Yes Mycobacterium avium subsp. paratuberculosis K-10   1 1
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   1 1
No Yes Mycobacterium canettii CIPT 140070008   1 1
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis CAS/NITR204   2 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis RGTB423   2 2
No Yes Mycobacterium tuberculosis RGTB327   2 2
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   1 1
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   2 2
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   1 1
No Yes Mycobacterium bovis BCG str. Korea 1168P   1 1
No Yes Mycobacterium bovis BCG str. Mexico   1 1
No Yes Mycobacterium bovis BCG str. Tokyo 172   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium leprae TN   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   3 2
No Yes Bifidobacterium longum NCC2705   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium longum subsp. longum BBMN68   1 1
No Yes Bifidobacterium longum subsp. longum JCM 1217   1 1
No Yes Chthonomonas calidirosea T49   9 5
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus HB8   2 2
No Yes Clostridium thermocellum DSM 1313   6 5
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Clostridium acidurici 9a   1 1
No Yes Desulfosporosinus meridiei DSM 13257   2 2
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   2 2
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Clostridium autoethanogenum DSM 10061   4 4
No Yes Clostridium kluyveri NBRC 12016   2 2
No Yes Clostridium perfringens SM101   1 1
No Yes Clostridium perfringens str. 13   1 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum BKT015925   3 2
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   3 3
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Clostridium acetobutylicum DSM 1731   3 2
No Yes Clostridium acetobutylicum EA 2018   3 2
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Paenibacillus sp. Y412MC10   3 2
No Yes Paenibacillus mucilaginosus KNP414   3 3
No Yes Paenibacillus mucilaginosus K02   5 5
No Yes Paenibacillus polymyxa CR1   3 2
No Yes Paenibacillus polymyxa SC2   5 3
No Yes Paenibacillus polymyxa E681   3 2
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   2 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   2 1
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   2 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   2 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   2 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   2 1
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   2 1
No Yes Bacillus amyloliquefaciens LFB112   2 1
No Yes Bacillus amyloliquefaciens CC178   2 1
No Yes Bacillus amyloliquefaciens Y2   2 1
No Yes Bacillus amyloliquefaciens IT-45   2 1
No Yes Bacillus amyloliquefaciens XH7   2 1
No Yes Bacillus amyloliquefaciens LL3   2 1
No Yes Bacillus amyloliquefaciens TA208   2 1
No Yes Bacillus amyloliquefaciens DSM 7   2 1
No Yes Bacillus licheniformis 9945A   2 1
No Yes Bacillus subtilis PY79   3 2
No Yes Bacillus subtilis XF-1   3 2
No Yes Bacillus subtilis QB928   3 2
No Yes Bacillus subtilis BSn5   3 2
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   3 2
No Yes Bacillus subtilis subsp. subtilis str. BSP1   3 2
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   3 2
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   3 2
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   3 2
No Yes Bacillus subtilis subsp. spizizenii str. W23   3 2
No Yes Bacillus subtilis subsp. natto BEST195   3 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 1
No Yes Bacillus infantis NRRL B-14911   2 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Chlorobium phaeobacteroides BS1   3 3
No Yes Salinibacter ruber DSM 13855   26 25
No Yes Rhodothermus marinus SG0.5JP17-172   25 25
No Yes Echinicola vietnamensis DSM 17526   101 100
No Yes Emticicia oligotrophica DSM 17448   64 64
No Yes Prevotella sp. oral taxon 299 str. F0039   33 33
No Yes Prevotella dentalis DSM 3688   47 47
No Yes Porphyromonas gingivalis TDC60   15 15
No Yes Porphyromonas gingivalis W83   16 16
No Yes Alistipes shahii WAL 8301   40 40
No Yes Bacteroides xylanisolvens XB1A   114 114
No Yes Bacteroides fragilis 638R   104 103
No Yes Bacteroides fragilis NCTC 9343   99 98
No Yes Nonlabens dokdonensis DSW-6   29 28
No Yes Psychroflexus torquis ATCC 700755   41 41
No Yes Riemerella anatipestifer RA-CH-2   9 9
No Yes Riemerella anatipestifer RA-CH-1   7 7
No Yes Riemerella anatipestifer RA-GD   9 9
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   9 9
No Yes Fibrobacter succinogenes subsp. succinogenes S85   8 8
No Yes Singulisphaera acidiphila DSM 18658   30 16
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   2 2
No Yes Leptospira interrogans serovar Lai str. 56601   3 3
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   3 3
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   3 3
No Yes Treponema pedis str. T A4   2 2
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   3 3
No Yes Fusobacterium nucleatum subsp. animalis 4_8   3 3
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Lawsonia intracellularis N343   1 1
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Geobacter sp. M18   8 4
No Yes Geobacter sulfurreducens PCA   3 2
No Yes Sorangium cellulosum So0157-2   13 13
No Yes Anaeromyxobacter sp. K   10 9
No Yes Anaeromyxobacter dehalogenans 2CP-C   5 4
No Yes Myxococcus stipitatus DSM 14675   38 22
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. KJ006   3 3
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   2 2
No Yes Burkholderia pseudomallei NCTC 13179   2 2
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   2 2
No Yes Burkholderia pseudomallei 668   2 2
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   2 2
No Yes Burkholderia mallei NCTC 10229   2 2
No Yes Burkholderia mallei NCTC 10247   2 2
No Yes Burkholderia mallei ATCC 23344   2 2
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella sp. ANA-3   2 2
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Glaciecola psychrophila 170   5 5
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   4 3
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   4 3
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   2 2
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   2 2
No Yes Alteromonas macleodii str. 'English Channel 615'   2 2
No Yes Alteromonas macleodii AltDE1   4 3
No Yes Alteromonas macleodii str. 'English Channel 673'   3 3
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   3 3
No Yes Alteromonas macleodii str. 'Black Sea 11'   3 3
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 2
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 2
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   2 2
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Xanthomonas campestris pv. raphani 756C   2 2
No Yes Xanthomonas campestris pv. campestris str. 8004   2 2
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   2 2
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Shigella sonnei 53G   2 2
No Yes Shigella flexneri 2002017   2 2
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella dysenteriae 1617   2 2
No Yes Shigella boydii Sb227   3 3
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   2 2
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   2 2
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   2 2
No Yes Salmonella enterica serovar Bovismorbificans genomics   2 2
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   2 2
No Yes Escherichia coli E. coli PMV-1   4 4
No Yes Escherichia coli JJ1886   5 5
No Yes Escherichia coli LY180   2 2
No Yes Escherichia coli APEC O78   4 4
No Yes Escherichia coli O7:K1 str. CE10   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2050   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2071   4 4
No Yes Escherichia coli O104:H4 str. 2011C-3493   5 5
No Yes Escherichia coli NA114   2 2
No Yes Escherichia coli str. 'clone D i2'   3 3
No Yes Escherichia coli str. 'clone D i14'   3 3
No Yes Escherichia coli UM146   3 3
No Yes Escherichia coli 042   5 5
No Yes Escherichia coli Xuzhou21   10 10
No Yes Escherichia coli IHE3034   5 5
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   3 3
No Yes Escherichia coli ABU 83972   3 3
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli LF82   3 3
No Yes Escherichia coli ED1a   8 8
No Yes Escherichia coli IAI39   6 6
No Yes Escherichia coli UMN026   4 4
No Yes Escherichia coli 55989   5 5
No Yes Escherichia coli S88   5 5
No Yes Escherichia coli IAI1   3 3
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   2 2
No Yes Escherichia coli DH1   2 2
No Yes Escherichia coli ATCC 8739   2 2
No Yes Escherichia coli BL21(DE3)   2 2
No Yes Escherichia coli BL21(DE3)   2 2
No Yes Escherichia coli SMS-3-5   2 2
No Yes Escherichia coli SE15   2 2
No Yes Escherichia coli SE11   5 5
No Yes Escherichia coli APEC O1   6 6
No Yes Escherichia coli O103:H2 str. 12009   11 11
No Yes Escherichia coli UTI89   4 4
No Yes Escherichia coli 536   2 2
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   3 3
No Yes Escherichia coli O55:H7 str. RM12579   9 9
No Yes Escherichia coli O55:H7 str. CB9615   9 9
No Yes Escherichia coli O26:H11 str. 11368   13 13
No Yes Escherichia coli CFT073   4 4
No Yes Escherichia coli O111:H- str. 11128   10 10
No Yes Escherichia coli O127:H6 str. E2348/69   5 5
No Yes Escherichia coli O157:H7 str. TW14359   13 13
No Yes Escherichia coli O157:H7 str. EC4115   10 10
No Yes Escherichia coli O157:H7 str. Sakai   10 10
No Yes Escherichia coli O157:H7 str. EDL933   10 10
No Yes Escherichia coli BW2952   2 2
No Yes Escherichia coli str. K-12 substr. MG1655   2 2
No Yes Escherichia coli str. K-12 substr. W3110   2 2
No Yes Escherichia coli str. K-12 substr. DH10B   2 2
No Yes Escherichia coli B str. REL606   4 4
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   5 2
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Sulfolobus islandicus LAL14/1   3 3
No Yes Sulfolobus islandicus REY15A   2 2
No Yes Sulfolobus islandicus HVE10/4   2 2
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   3 3
No Yes Sulfolobus acidocaldarius Ron12/I   2 2
No Yes Sulfolobus acidocaldarius N8   2 2
No Yes Methanomethylovorans hollandica DSM 15978   6 6
No Yes Methanolobus psychrophilus R15   3 3
No Yes Methanosarcina mazei Tuc01   6 6
No Yes Methanoregula formicica Methanoregula formicicum SMSP   4 2
No Yes Archaeoglobus sulfaticallidus PM70-1   2 2
No Yes Thermococcus sp. AM4   3 3
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   3 3
No Yes Pyrococcus sp. NA2   2 2
No Yes Pyrococcus furiosus DSM 3638   2 2
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   2 1
No Yes Ferroplasma acidarmanus fer1   2 2
No Yes Halovivax ruber XH-70   8 3
No Yes Natronococcus occultus SP4   8 7
No Yes Natronobacterium gregoryi SP2   3 3
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   2 1
No Yes Methanobacterium sp. SWAN-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 38 34
No Yes Homo sapiens (NCBI version) Human 27 23
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 14 12
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 4 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 5 5
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 2
No Yes Malus x domestica (Duplicate) Apple 3 3
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes Homo sapiens 69_37 Human 18 16
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 13 11
No Yes Gorilla gorilla 69_3.1 Western gorilla 12 12
No Yes Pongo abelii 69_2 Sumatran orangutan 15 13
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 15 13
No Yes Macaca mulatta 69_1 Rhesus monkey 12 12
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 14 12
No Yes Otolemur garnettii 69_3 Small-eared galago 16 14
No Yes Microcebus murinus 69_1 Gray mouse lemur 13 12
No Yes Rattus norvegicus 69_3.4 Norway rat 14 12
No Yes Mus musculus 69_38 House mouse 14 12
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 13 12
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 11
No Yes Cavia porcellus 69_3 Domestic guinea pig 15 13
No Yes Oryctolagus cuniculus 69_2 Rabbit 17 15
No Yes Ochotona princeps 69 American pika 6 5
No Yes Tupaia belangeri 69 Northern tree shrew 10 8
No Yes Sus scrofa 69_10.2 Pig 14 12
No Yes Bos taurus 69_3.1 Cattle 16 15
No Yes Vicugna pacos 69_1 Alpaca 5 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 13
No Yes Mustela putorius furo 69_1.0 Domestic ferret 15 13
No Yes Ailuropoda melanoleuca 69_1 Giant panda 15 13
No Yes Canis familiaris 69_3.1 Dog 14 12
No Yes Felis catus 69 Domestic cat 9 8
No Yes Equus caballus 69_2 Horse 17 15
No Yes Myotis lucifugus 69_2.0 Little brown bat 14 12
No Yes Pteropus vampyrus 69_1 Large flying fox 14 12
No Yes Sorex araneus 69_1 European shrew 10 8
No Yes Erinaceus europaeus 69 Western European hedgehog 9 7
No Yes Procavia capensis 69_1 Cape rock hyrax 14 12
No Yes Loxodonta africana 69_3 African savanna elephant 15 13
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 8
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 10 8
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 7
No Yes Macropus eugenii 69_1.0 Tammar wallaby 11 10
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 12 11
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 16 14
No Yes Ornithorhynchus anatinus 69_5 Platypus 14 12
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 69_2 Turkey 15 14
No Yes Gallus gallus 69_2 Chicken 14 12
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 14 12
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 12 10
No Yes Anolis carolinensis 69_2.0 Green anole 13 13
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 13 12
No Yes Latimeria chalumnae 69_1 Coelacanth 12 10
No Yes Gadus morhua 69_1 Atlantic cod 17 15
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 16 14
No Yes Takifugu rubripes 69_4 Torafugu 23 21
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 18 16
No Yes Oryzias latipes 69_1 Japanese medaka 21 19
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 19 18
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 20 18
No Yes Danio rerio 69_9 Zebrafish 22 18
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 6 3
No Yes Caenorhabditis elegans 69_215 Roundworm 3 3
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 1_050719N (meta-genome)   35 32
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   81 65
No Yes 2_Base_of_chrolophyll_max (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   58 47
No Yes 3_Below_base_of_euphotic (meta-genome)   9 9
No Yes 4_050719Q (meta-genome)   111 105
No Yes 4_Deep_abyss (meta-genome)   8 8
No Yes 5_050719P (meta-genome)   85 73
No Yes 5_Below_upper_mesopelagic (meta-genome)   11 11
No Yes 6_Upper_euphotic (meta-genome)   4 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   8 8
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   19 19
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   6 6
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   6 6
No Yes Bath Hot Springs, filamentous community (meta-genome)   7 4
No Yes Bath Hot Springs, planktonic community (meta-genome)   8 8
No Yes Combined (meta-genome)   239 239
No Yes Crater Hills (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   43 43
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   374 372
No Yes Dump top (Dump top) (meta-genome)   311 307
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   52 52
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   57 55
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   62 62
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   50 48
No Yes Fungus garden combined (combined) (meta-genome)   11 11
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   18 18
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   32 32
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   49 47
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   9 7
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   16 16
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   24 23
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   27 26
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   17 16
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   10 10
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   29 28
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   11 9
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   14 13
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   11 11
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   30 30
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   69 58
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   29 23
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   72 69
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   61 56
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   62 59
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   63 56
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   52 46
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   18 14
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   7 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   39 37
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   107 103
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   65 64
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   12 12
No Yes Human Gut Community Subject 7 (meta-genome)   7 7
No Yes Human Gut Community Subject 8 (meta-genome)   6 5
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   102 102
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   89 89
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   74 74
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   32 32
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   285 264
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   93 88
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   25 22
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   87 81
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   66 60
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   14 13
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   105 105
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   59 59
No Yes Mouse Gut Community lean1 (meta-genome)   7 6
No Yes Mouse Gut Community lean2 (meta-genome)   7 7
No Yes Mouse Gut Community lean3 (meta-genome)   7 7
No Yes Mouse Gut Community ob2 (meta-genome)   3 3
No Yes NCBI 2017_08 genome   180739 174430
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   177 173
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   13 9
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   15 14
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   17 17
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Single-cell genome from subgingival tooth surface TM7b (meta-genome)   1 1
No Yes Single-cell genome from subgingival tooth surface TM7c (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   32 31
No Yes Sludge/US, Jazz Assembly (meta-genome)   18 18
No Yes Sludge/US, Phrap Assembly (meta-genome)   39 39
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   277 269
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   220 216
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   181 179
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   88 88
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   94 92
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   224 223
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   252 251
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   33 32
No Yes STRING v9.0.5 (STRING)   3139 2904
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   29 29
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   258 255
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   55 54
No Yes Termite Protist Endosymbiont Community (meta-genome)   10 10
No Yes Uniprot 2018_03 genome   129571 123095
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   96 88
No Yes Global Ocean Sampling Expedition (GOS)   4304 4242
No Yes NCBI plasmid sequences (Plasmids)   94 84
No Yes NCBI viral sequences (Viral)   26 25
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   31 31
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   44 44
No Yes TargetDB (Targets)   83 82
No Yes The Salmonella enterica Pan-genome (meta-genome)   28 28
No Yes UniProt viral sequences (Viral)   19 19

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