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Aromatic compound dioxygenase superfamily domain assignments
in
Sinorhizobium medicae WSM419

Assignment details

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Sinorhizobium medicae WSM419 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|150376214|ref|YP_001312810.1|   3.66e-47   38-191   Aromatic compound dioxygenase  
gi|150376350|ref|YP_001312946.1|   3.27e-80   19-249   Aromatic compound dioxygenase  
gi|150376351|ref|YP_001312947.1|   6.41e-60   7-204   Aromatic compound dioxygenase  

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Select to display   Genome       Domains   Proteins
No Yes ALL   89694 89694
No Yes Adineta vaga   19 18
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 18 16
No Yes Schistosoma mansoni   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Sporisorium reilianum 22   2 2
No Yes Ustilago maydis   3 3
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   3 3
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 3
No Yes Melampsora laricis-populina   4 4
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   3 3
No Yes Microbotryum violaceum 22   2 2
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   7 7
No Yes Piloderma croceum F 1598 v1.0   7 7
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   4 4
No Yes Hydnomerulius pinastri v2.0   4 4
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 2
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 2
No Yes Scleroderma citrinum Foug A v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   3 3
No Yes Pleurotus ostreatus Oyster mushroom 3 3
No Yes Amanita thiersii Skay4041 v1.0   4 4
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 2
No Yes Galerina marginata v1.0   5 5
No Yes Hebeloma cylindrosporum h7 v2.0   2 2
No Yes Laccaria bicolor S238N-H82   2 2
No Yes Agaricus bisporus var. bisporus   6 6
No Yes Schizophyllum commune   7 7
No Yes Stereum hirsutum FP-91666 SS1 v1.0   11 11
No Yes Heterobasidion annosum   3 3
No Yes Gloeophyllum trabeumv1.0   5 5
No Yes Punctularia strigosozonata v1.0   7 6
No Yes Sebacina vermifera MAFF 305830 v1.0   10 9
No Yes Fomitiporia mediterranea v1.0   9 9
No Yes Tulasnella calospora AL13/4D v1.0   4 4
No Yes Postia placenta   4 4
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 2
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   4 4
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   3 3
No Yes Daldinia eschscholzii EC12 v1.0   7 7
No Yes Apiospora montagnei NRRL 25634 v1.0   8 8
No Yes Magnaporthe poae ATCC 64411 22   4 4
No Yes Magnaporthe grisea 70-15   5 5
No Yes Podospora anserina   4 4
No Yes Sporotrichum thermophile ATCC 42464   5 5
No Yes Thielavia terrestris NRRL 8126   6 6
No Yes Chaetomium globosum CBS 148.51   6 6
No Yes Neurospora tetrasperma   4 4
No Yes Neurospora discreta FGSC 8579   3 3
No Yes Neurospora crassa OR74A   4 4
No Yes Cryphonectria parasitica Chestnut blight fungus 11 11
No Yes Verticillium albo-atrum VaMs.102   5 5
No Yes Verticillium dahliae VdLs.17   5 5
No Yes Acremonium alcalophilumv 1.0   3 3
No Yes Glomerella graminicola 22   8 8
No Yes Fusarium graminearum   6 6
No Yes Nectria haematococca mpVI   12 12
No Yes Fusarium oxysporum f. sp. lycopersici 4286   8 8
No Yes Fusarium verticillioides 7600   7 7
No Yes Trichoderma asperellum CBS 433.97 v1.0   5 5
No Yes Trichoderma atroviride   3 3
No Yes Trichoderma citrinoviride v1.0   3 3
No Yes Trichoderma reesei 1.2   4 4
No Yes Trichoderma virens Gv29-8   6 6
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   4 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   7 6
No Yes Amorphotheca resinae v1.0 Creosote fungus 3 3
No Yes Botrytis cinerea B05.10   9 9
No Yes Sclerotinia sclerotiorum   5 5
No Yes Didymella exigua CBS 183.55 v1.0   7 7
No Yes Leptosphaeria maculans 22   3 3
No Yes Setosphaeria turcica v1.0   4 4
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   6 6
No Yes Cochliobolus victoriae FI3 v1.0   8 8
No Yes Cochliobolus carbonum 26-R-13 v1.0   7 7
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 7 7
No Yes Alternaria brassicicola   5 5
No Yes Cochliobolus lunatus m118 v2.0   6 6
No Yes Pyrenophora teres f. teres 22   4 4
No Yes Pyrenophora tritici-repentis   4 4
No Yes Stagonospora nodorum   6 6
No Yes Mycosphaerella graminicola IPO323   3 3
No Yes Zasmidium cellare ATCC 36951 v1.0   10 10
No Yes Dothistroma septosporum   4 4
No Yes Septoria musiva v1.0   8 8
No Yes Mycosphaerella fijiensis CIRAD86   4 4
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   8 8
No Yes Paracoccidioides brasiliensis Pb18   3 3
No Yes Coccidioides posadasii RMSCC 3488   2 2
No Yes Coccidioides immitis RS   2 2
No Yes Ajellomyces dermatitidis SLH14081   3 3
No Yes Histoplasma capsulatum class NAmI strain WU24   2 2
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   2 2
No Yes Aspergillus zonatus v1.0   4 4
No Yes Penicillium chrysogenum Wisconsin 54-1255   7 7
No Yes Penicillium chrysogenum v1.0   7 7
No Yes Aspergillus acidus v1.0   14 14
No Yes Aspergillus fumigatus Af293   6 6
No Yes Aspergillus brasiliensis v1.0   15 15
No Yes Aspergillus nidulans FGSC A4   12 12
No Yes Aspergillus sydowii v1.0   13 13
No Yes Aspergillus versicolor v1.0   11 11
No Yes Aspergillus glaucus   11 11
No Yes Aspergillus carbonarius ITEM 5010   10 10
No Yes Neosartorya fischeri NRRL 181   7 7
No Yes Aspergillus terreus NIH2624   7 7
No Yes Aspergillus tubingensis v1.0   14 14
No Yes Aspergillus wentii v1.0   12 12
No Yes Aspergillus oryzae RIB40   12 12
No Yes Aspergillus niger 22   13 13
No Yes Aspergillus niger ATCC 1015   13 13
No Yes Aspergillus flavus NRRL3357   13 13
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   4 4
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Candida dubliniensis CD36   2 2
No Yes Candida tropicalis MYA-3404   2 2
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   3 3
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   3 3
No Yes Pichia stipitis CBS 6054   2 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   3 3
No Yes Wickerhamomyces anomalus   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Pythium iwayamai DAOM BR242034 22   9 8
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   9 9
No Yes Pythium aphanidermatum DAOM BR444 22   7 7
No Yes Pythium irregulare DAOM BR486 22   7 7
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 15 15
No Yes Phytophthora sojae 1.1   14 14
No Yes Phytophthora infestans T30-4   5 5
No Yes Phytophthora capsici   5 5
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   6 6
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Naegleria gruberi   1 1
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Rubrobacter xylanophilus DSM 9941   3 3
No Yes Thermobispora bispora DSM 43833   2 2
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   2 2
No Yes Blastococcus saxobsidens DD2   4 4
No Yes Geodermatophilus obscurus DSM 43160   4 4
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Stackebrandtia nassauensis DSM 44728   3 3
No Yes Frankia symbiont of Datisca glomerata   2 2
No Yes Frankia sp. EAN1pec   2 2
No Yes Thermomonospora curvata DSM 43183   2 2
No Yes Streptosporangium roseum DSM 43021   3 3
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces coelicolor A3(2)   3 3
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   6 6
No Yes Streptomyces violaceusniger Tu 4113   4 4
No Yes Streptomyces avermitilis MA-4680   7 7
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   8 8
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   4 4
No Yes Actinosynnema mirum DSM 43827   4 4
No Yes Saccharomonospora viridis DSM 43017   3 3
No Yes Pseudonocardia dioxanivorans CB1190   10 10
No Yes Saccharopolyspora erythraea NRRL 2338   5 5
No Yes Amycolatopsis mediterranei U32   6 6
No Yes Kribbella flavida DSM 17836   1 1
No Yes Nocardioides sp. JS614   2 2
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Actinoplanes sp. N902-109   3 3
No Yes Actinoplanes sp. SE50/110   5 5
No Yes Actinoplanes missouriensis 431   7 7
No Yes Tsukamurella paurometabola DSM 20162   2 2
No Yes Gordonia sp. KTR9   3 3
No Yes Gordonia polyisoprenivorans VH2   3 3
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   13 12
No Yes Rhodococcus equi 103S   6 5
No Yes Rhodococcus opacus B4   9 8
No Yes Rhodococcus erythropolis PR4   5 4
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Nocardia farcinica IFM 10152   2 2
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium sp. JLS   4 4
No Yes Mycobacterium intracellulare ATCC 13950   2 2
No Yes Mycobacterium avium 104   2 2
No Yes Mycobacterium vanbaalenii PYR-1   4 4
No Yes Mycobacterium rhodesiae NBB3   5 5
No Yes Mycobacterium gilvum PYR-GCK   4 4
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   5 5
No Yes Corynebacterium efficiens YS-314   3 3
No Yes Corynebacterium urealyticum DSM 7109   1 1
No Yes Corynebacterium variabile DSM 44702   2 2
No Yes Corynebacterium glutamicum R   6 6
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Microbacterium testaceum StLB037   3 3
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   3 3
No Yes Arthrobacter chlorophenolicus A6   5 5
No Yes Arthrobacter aurescens TC1   3 3
No Yes Arthrobacter arilaitensis Re117   3 3
No Yes Kocuria rhizophila DC2201   2 2
No Yes Arthrobacter sp. Rue61a   3 3
No Yes Arthrobacter sp. FB24   4 4
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Sphaerobacter thermophilus DSM 20745   2 2
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   4 4
No Yes Deinococcus geothermalis DSM 11300   3 3
No Yes Meiothermus ruber DSM 1279   3 3
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Thermus thermophilus HB27   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   4 4
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Fibrella aestuarina   2 2
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   4 4
No Yes Runella slithyformis DSM 19594   4 4
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Gramella forsetii KT0803   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Aequorivita sublithincola DSM 14238   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter sp. M21   1 1
No Yes Haliangium ochraceum DSM 14365   2 2
No Yes Sorangium cellulosum 'So ce 56'   3 3
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Corallococcus coralloides DSM 2259   3 3
No Yes Myxococcus fulvus HW-1   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Pseudogulbenkiania sp. NH8B   4 4
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Leptothrix cholodnii SP-6   2 2
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phytofirmans PsJN   5 5
No Yes Burkholderia phymatum STM815   4 4
No Yes Burkholderia xenovorans LB400   4 4
No Yes Ralstonia eutropha JMP134   10 10
No Yes Cupriavidus taiwanensis LMG 19424   4 4
No Yes Cupriavidus metallidurans CH34   8 8
No Yes Cupriavidus necator N-1   12 12
No Yes Ralstonia eutropha H16   8 8
No Yes Ralstonia pickettii 12D   3 3
No Yes Ralstonia solanacearum CFBP2957   3 3
No Yes Burkholderia sp. RPE64   5 5
No Yes Burkholderia sp. CCGE1002   4 4
No Yes Burkholderia thailandensis E264   3 3
No Yes Burkholderia pseudomallei 1106a   3 3
No Yes Burkholderia mallei SAVP1   3 3
No Yes Burkholderia ambifaria AMMD   6 6
No Yes Burkholderia cenocepacia HI2424   4 4
No Yes Burkholderia multivorans ATCC 17616   5 5
No Yes Burkholderia vietnamiensis G4   4 4
No Yes Burkholderia gladioli BSR3   5 5
No Yes Burkholderia glumae BGR1   3 3
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   3 3
No Yes Polaromonas sp. JS666   6 6
No Yes Polaromonas naphthalenivorans CJ2   2 2
No Yes Variovorax paradoxus S110   7 7
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Collimonas fungivorans Ter331   2 2
No Yes Herbaspirillum seropedicae SmR1   5 5
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella petrii DSM 12804   5 5
No Yes Achromobacter xylosoxidans A8   4 4
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Methylovorus sp. MP688   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter sp. K31   2 2
No Yes Caulobacter crescentus NA1000   2 2
No Yes Caulobacter segnis ATCC 21756   3 3
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingobium japonicum UT26S   3 3
No Yes Sphingobium chlorophenolicum L-1   2 2
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   7 7
No Yes Dinoroseobacter shibae DFL 12   4 4
No Yes Phaeobacter gallaeciensis 2.10   2 2
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Jannaschia sp. CCS1   2 2
No Yes Ruegeria sp. TM1040   2 2
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Ketogulonicigenium vulgare Y25   3 3
No Yes Ketogulonigenium vulgarum WSH-001   3 3
No Yes Roseobacter litoralis Och 149   3 3
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Paracoccus denitrificans PD1222   4 4
No Yes Tistrella mobilis KA081020-065   3 3
No Yes Azospirillum lipoferum 4B   4 4
No Yes Azospirillum sp. B510   4 4
No Yes Acidiphilium multivorum AIU301   2 2
No Yes Acidiphilium cryptum JF-5   2 2
No Yes Polymorphum gilvum SL003B-26A1   5 5
No Yes Candidatus Midichloria mitochondrii IricVA   1 1
No Yes Wolbachia endosymbiont of Culex quinquefasciatus Pel   1 1
No Yes Wolbachia sp. wRi   1 1
No Yes Ehrlichia chaffeensis str. Arkansas   1 1
No Yes Ehrlichia canis str. Jake   1 1
No Yes Ehrlichia ruminantium str. Gardel   1 1
No Yes Anaplasma phagocytophilum HZ   1 1
No Yes Anaplasma marginale str. Florida   1 1
No Yes Anaplasma centrale str. Israel   1 1
No Yes Orientia tsutsugamushi str. Boryong   1 1
No Yes Rickettsia bellii OSU 85-389   1 1
No Yes Rickettsia canadensis str. McKiel   1 1
No Yes Rickettsia typhi str. Wilmington   1 1
No Yes Rickettsia prowazekii str. BuV67-CWPP   1 1
No Yes Rickettsia philipii str. 364D   1 1
No Yes Rickettsia heilongjiangensis 054   1 1
No Yes Rickettsia peacockii str. Rustic   1 1
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Rickettsia slovaca 13-B   1 1
No Yes Rickettsia parkeri str. Portsmouth   1 1
No Yes Rickettsia massiliae MTU5   1 1
No Yes Rickettsia japonica YH   1 1
No Yes Rickettsia africae ESF-5   1 1
No Yes Rickettsia rhipicephali str. 3-7-female6-CWPP   1 1
No Yes Rickettsia montanensis str. OSU 85-930   1 1
No Yes Candidatus Rickettsia amblyommii str. GAT-30V   1 1
No Yes Rickettsia australis str. Cutlack   1 1
No Yes Rickettsia akari str. Hartford   1 1
No Yes Rickettsia rickettsii str. 'Sheila Smith'   1 1
No Yes Rickettsia conorii str. Malish 7   1 1
No Yes Xanthobacter autotrophicus Py2   5 5
No Yes Azorhizobium caulinodans ORS 571   3 3
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium sp. 4-46   3 3
No Yes Methylobacterium nodulans ORS 2060   6 6
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   2 2
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   2 2
No Yes Sinorhizobium fredii NGR234   4 4
No Yes Sinorhizobium medicae WSM419   3 3
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Genome sequence of Rhizobium sp. strain IRBG74   3 3
No Yes Rhizobium etli CIAT 652   3 3
No Yes Rhizobium leguminosarum bv. viciae 3841   6 6
No Yes Agrobacterium tumefaciens str. C58   3 3
No Yes Agrobacterium radiobacter K84   4 4
No Yes Agrobacterium sp. H13-3   4 4
No Yes Agrobacterium vitis S4   3 3
No Yes Mesorhizobium sp. BNC1   3 3
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   5 5
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Pelagibacterium halotolerans B2   5 5
No Yes Hyphomicrobium sp. MC1   2 2
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Bradyrhizobium japonicum USDA 110   8 8
No Yes Bradyrhizobium sp. ORS 278   5 5
No Yes Methylocystis sp. SC2   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Oceanimonas sp. GK1   3 3
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Marinobacter sp. BSs20148   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Marinomonas mediterranea MMB-1   3 3
No Yes Chromohalobacter salexigens DSM 3043   2 2
No Yes Halomonas elongata DSM 2581   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   2 2
No Yes Xanthomonas albilineans GPE PC73   2 2
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Xanthomonas campestris pv. campestris str. B100   2 2
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   2 2
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Serratia sp. AS12   2 2
No Yes Serratia plymuthica AS9   2 2
No Yes Serratia proteamaculans 568   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Pantoea ananatis LMG 20103   2 2
No Yes Escherichia blattae DSM 4481   2 2
No Yes Enterobacteriaceae bacterium strain FGI 57   4 4
No Yes Klebsiella oxytoca E718   2 2
No Yes Klebsiella variicola At-22   3 3
No Yes Klebsiella pneumoniae NTUH-K2044   3 3
No Yes Enterobacter aerogenes KCTC 2190   3 3
No Yes Escherichia fergusonii ATCC 35469   3 3
No Yes Enterobacter asburiae LF7a   1 1
No Yes Citrobacter rodentium ICC168   2 2
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   4 4
No Yes Pseudomonas sp. UW4   4 4
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   5 5
No Yes Pseudomonas entomophila L48   3 3
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 2
No Yes Pseudomonas stutzeri A1501   3 3
No Yes Pseudomonas fulva 12-X   3 3
No Yes Pseudomonas putida F1   4 4
No Yes Pseudomonas protegens Pf-5   5 5
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   3 3
No Yes Pseudomonas sp. VLB120   3 3
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Acinetobacter oleivorans DR1   3 3
No Yes Acinetobacter calcoaceticus PHEA-2   3 3
No Yes Acinetobacter baumannii ATCC 17978   3 3
No Yes Acinetobacter sp. ADP1   3 3
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Methanothermobacter marburgensis str. Marburg   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   3 3
No Yes Paracoccidioides brasiliensis Pb03   3 3
No Yes Coccidioides posadasii str. Silveira   2 2
No Yes Coccidioides immitis RMSCC 3703   2 2
No Yes Coccidioides immitis RMSCC 2394   2 2
No Yes Coccidioides immitis H538.4   2 2
No Yes Ajellomyces dermatitidis ER-3   3 3
No Yes Histoplasma capsulatum H143   3 3
No Yes Histoplasma capsulatum H88   3 3
No Yes Histoplasma capsulatum G186AR   3 3
No Yes Aspergillus fumigatus A1163   6 6
No Yes Candida albicans WO-1   2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Frankia sp. EuI1c   3 3
No Yes Frankia sp. CcI3   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   6 6
No Yes Streptomyces davawensis JCM 4913   5 5
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   5 5
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   4 4
No Yes Saccharothrix espanaensis DSM 44229   6 6
No Yes Amycolatopsis mediterranei RB   6 6
No Yes Amycolatopsis mediterranei S699   6 6
No Yes Amycolatopsis mediterranei S699   6 6
No Yes Amycolatopsis orientalis HCCB10007   5 5
No Yes Actinoplanes friuliensis DSM 7358   4 4
No Yes Rhodococcus pyridinivorans SB3094   3 3
No Yes Rhodococcus erythropolis CCM2595   5 4
No Yes Nocardia brasiliensis ATCC 700358   3 3
No Yes Mycobacterium sp. MOTT36Y   2 2
No Yes Mycobacterium sp. JDM601   2 2
No Yes Mycobacterium sp. KMS   7 7
No Yes Mycobacterium sp. MCS   4 4
No Yes Mycobacterium yongonense 05-1390   2 2
No Yes Mycobacterium intracellulare MOTT-64   2 2
No Yes Mycobacterium indicus pranii MTCC 9506   2 2
No Yes Mycobacterium intracellulare MOTT-02   2 2
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   2 2
No Yes Mycobacterium avium subsp. paratuberculosis K-10   2 2
No Yes Mycobacterium gilvum Spyr1   4 4
No Yes Mycobacterium smegmatis str. MC2 155   5 5
No Yes Mycobacterium kansasii ATCC 12478   4 4
No Yes Corynebacterium maris DSM 45190   4 4
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   5 5
No Yes Corynebacterium terpenotabidum Y-11   1 1
No Yes Corynebacterium callunae DSM 20147   3 3
No Yes Corynebacterium glutamicum MB001   6 6
No Yes Corynebacterium glutamicum SCgG2   6 6
No Yes Corynebacterium glutamicum SCgG1   6 6
No Yes Corynebacterium glutamicum ATCC 13032   6 6
No Yes Corynebacterium glutamicum ATCC 13032   6 6
No Yes Corynebacterium glutamicum ATCC 13032   6 6
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Thermus thermophilus HB8   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   3 3
No Yes Riemerella anatipestifer RA-CH-2   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Riemerella anatipestifer RA-GD   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Singulisphaera acidiphila DSM 18658   5 5
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Geobacter sp. M18   1 1
No Yes Sorangium cellulosum So0157-2   3 3
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Burkholderia phenoliruptrix BR3459a   6 6
No Yes Pandoraea pnomenusa 3kgm   3 3
No Yes Ralstonia pickettii 12J   3 3
No Yes Ralstonia solanacearum FQY_4   2 2
No Yes Ralstonia solanacearum Po82   3 3
No Yes Ralstonia solanacearum PSI07   4 4
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Ralstonia solanacearum GMI1000   2 2
No Yes Burkholderia sp. YI23   9 9
No Yes Burkholderia sp. CCGE1003   4 4
No Yes Burkholderia sp. CCGE1001   5 5
No Yes Burkholderia sp. KJ006   4 4
No Yes Burkholderia thailandensis MSMB121   3 3
No Yes Burkholderia pseudomallei MSHR305   3 3
No Yes Burkholderia pseudomallei NCTC 13179   3 3
No Yes Burkholderia pseudomallei BPC006   3 3
No Yes Burkholderia pseudomallei 1026b   3 3
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   3 3
No Yes Burkholderia pseudomallei 1710b   3 3
No Yes Burkholderia pseudomallei K96243   3 3
No Yes Burkholderia mallei NCTC 10229   3 3
No Yes Burkholderia mallei NCTC 10247   3 3
No Yes Burkholderia mallei ATCC 23344   3 3
No Yes Burkholderia lata   5 5
No Yes Burkholderia ambifaria MC40-6   5 5
No Yes Burkholderia cenocepacia MC0-3   5 5
No Yes Burkholderia cenocepacia AU 1054   4 4
No Yes Burkholderia cenocepacia J2315   5 5
No Yes Burkholderia multivorans ATCC 17616   5 5
No Yes Burkholderia cepacia GG4   4 4
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   7 7
No Yes Variovorax paradoxus EPS   4 4
No Yes Nitrosomonas sp. AL212   1 1
No Yes Caulobacter crescentus CB15   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   2 2
No Yes Phaeobacter gallaeciensis DSM 26640   4 4
No Yes Leisingera methylohalidivorans DSM 14336   2 2
No Yes Octadecabacter antarcticus 307   1 1
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont of Onchocerca ochengi str. Adamawa_Cameroon   1 1
No Yes Wolbachia endosymbiont strain TRS of Brugia malayi   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wHa   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Ehrlichia muris AS145   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Anaplasma phagocytophilum str. Dog2   1 1
No Yes Anaplasma phagocytophilum str. HZ2   1 1
No Yes Anaplasma phagocytophilum str. JM   1 1
No Yes Anaplasma marginale str. Dawn   1 1
No Yes Anaplasma marginale str. Gypsy Plains   1 1
No Yes Anaplasma marginale str. St. Maries   1 1
No Yes Orientia tsutsugamushi str. Ikeda   1 1
No Yes Rickettsia bellii RML369-C   1 1
No Yes Rickettsia canadensis str. CA410   1 1
No Yes Rickettsia typhi str. B9991CWPP   1 1
No Yes Rickettsia typhi str. TH1527   1 1
No Yes Rickettsia prowazekii str. Breinl   1 1
No Yes Rickettsia prowazekii str. NMRC Madrid E   1 1
No Yes Rickettsia prowazekii str. RpGvF24   1 1
No Yes Rickettsia prowazekii str. GvV257   1 1
No Yes Rickettsia prowazekii str. Dachau   1 1
No Yes Rickettsia prowazekii str. Katsinyian   1 1
No Yes Rickettsia prowazekii str. Chernikova   1 1
No Yes Rickettsia prowazekii Rp22   1 1
No Yes Rickettsia prowazekii str. Madrid E   1 1
No Yes Rickettsia slovaca str. D-CWPP   1 1
No Yes Rickettsia massiliae str. AZT80   1 1
No Yes Rickettsia rickettsii str. Arizona   1 1
No Yes Rickettsia rickettsii str. Brazil   1 1
No Yes Rickettsia rickettsii str. Hauke   1 1
No Yes Rickettsia rickettsii str. Colombia   1 1
No Yes Rickettsia rickettsii str. Hlp#2   1 1
No Yes Rickettsia rickettsii str. Hino   1 1
No Yes Rickettsia rickettsii str. Iowa   1 1
No Yes Brucella ceti TE10759-12   2 2
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   2 2
No Yes Brucella suis 1330   2 2
No Yes Brucella suis 1330   2 2
No Yes Brucella melitensis NI   2 2
No Yes Brucella melitensis M5-90   2 2
No Yes Brucella melitensis M28   2 2
No Yes Brucella melitensis bv. 1 str. 16M   2 2
No Yes Brucella abortus A13334   2 2
No Yes Brucella melitensis biovar Abortus 2308   2 2
No Yes Brucella abortus bv. 1 str. 9-941   2 2
No Yes Sinorhizobium fredii USDA 257   4 4
No Yes Sinorhizobium fredii HH103   4 4
No Yes Sinorhizobium meliloti 2011   3 3
No Yes Sinorhizobium meliloti GR4   4 4
No Yes Sinorhizobium meliloti Rm41   5 5
No Yes Sinorhizobium meliloti SM11   3 3
No Yes Sinorhizobium meliloti BL225C   3 3
No Yes Sinorhizobium meliloti 1021   3 3
No Yes Rhizobium etli CFN 42   4 4
No Yes Rhizobium etli bv. mimosae str. Mim1   3 3
No Yes Rhizobium tropici CIAT 899   3 3
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   5 5
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   5 5
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   7 7
No Yes Bradyrhizobium sp. BTAi1   3 3
No Yes Bradyrhizobium oligotrophicum S58   4 4
No Yes Bradyrhizobium japonicum USDA 6   10 10
No Yes Vibrio sp. EJY3   2 2
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   2 2
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 2
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 2
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   2 2
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Xanthomonas campestris pv. raphani 756C   2 2
No Yes Xanthomonas campestris pv. campestris str. 8004   2 2
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Serratia sp. AS13   2 2
No Yes Serratia plymuthica S13   2 2
No Yes Serratia plymuthica 4Rx13   2 2
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   2 2
No Yes Pantoea ananatis PA13   2 2
No Yes Pantoea ananatis AJ13355   2 2
No Yes Raoultella ornithinolytica B6   3 3
No Yes Klebsiella oxytoca KCTC 1686   2 2
No Yes Klebsiella pneumoniae JM45   3 3
No Yes Klebsiella pneumoniae CG43   3 3
No Yes Klebsiella pneumoniae KCTC 2242   3 3
No Yes Klebsiella pneumoniae 342   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   3 3
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   2 2
No Yes Enterobacter aerogenes EA1509E   3 3
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   3 3
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   2 2
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri DSM 4166   3 3
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   3 3
No Yes Pseudomonas monteilii SB3101   4 4
No Yes Pseudomonas monteilii SB3078   4 4
No Yes Pseudomonas putida H8234   4 4
No Yes Pseudomonas putida HB3267   3 3
No Yes Pseudomonas putida NBRC 14164   5 5
No Yes Pseudomonas putida DOT-T1E   6 6
No Yes Pseudomonas putida S16   4 4
No Yes Pseudomonas putida BIRD-1   4 4
No Yes Pseudomonas putida W619   3 3
No Yes Pseudomonas putida ND6   6 6
No Yes Pseudomonas putida KT2440   4 4
No Yes Pseudomonas putida GB-1   5 5
No Yes Pseudomonas protegens CHA0   5 5
No Yes Pseudomonas poae RE*1-1-14   3 3
No Yes Pseudomonas fluorescens F113   8 8
No Yes Pseudomonas fluorescens A506   3 3
No Yes Pseudomonas fluorescens R124   3 3
No Yes Pseudomonas fluorescens Pf0-1   5 5
No Yes Pseudomonas resinovorans NBRC 106553   6 6
No Yes Pseudomonas mendocina NK-01   3 3
No Yes Pseudomonas aeruginosa SCV20265   3 3
No Yes Pseudomonas aeruginosa MTB-1   3 3
No Yes Pseudomonas aeruginosa LES431   3 3
No Yes Pseudomonas aeruginosa RP73   3 3
No Yes Pseudomonas aeruginosa B136-33   3 3
No Yes Pseudomonas aeruginosa PA1R   3 3
No Yes Pseudomonas aeruginosa PA1   3 3
No Yes Pseudomonas aeruginosa DK2   3 3
No Yes Pseudomonas aeruginosa NCGM2.S1   3 3
No Yes Pseudomonas aeruginosa M18   3 3
No Yes Pseudomonas aeruginosa LESB58   3 3
No Yes Pseudomonas aeruginosa PA7   4 4
No Yes Pseudomonas aeruginosa PAO1   3 3
No Yes Acinetobacter genomosp. 13TU RUH2624   3 3
No Yes Acinetobacter sp. SH024   3 3
No Yes Acinetobacter calcoaceticus ruh2202   3 3
No Yes Acinetobacter baumannii ZW85-1   3 3
No Yes Acinetobacter baumannii TYTH-1   3 3
No Yes Acinetobacter baumannii BJAB0868   3 3
No Yes Acinetobacter baumannii BJAB0715   3 3
No Yes Acinetobacter baumannii BJAB07104   3 3
No Yes Acinetobacter baumannii TCDC-AB0715   3 3
No Yes Acinetobacter baumannii D1279779   3 3
No Yes Acinetobacter baumannii MDR-TJ   3 3
No Yes Acinetobacter baumannii 1656-2   3 3
No Yes Acinetobacter baumannii ATCC 19606   3 3
No Yes Acinetobacter baumannii AB307-0294   3 3
No Yes Acinetobacter baumannii AYE   3 3
No Yes Acinetobacter baumannii SDF   3 3
No Yes Acinetobacter baumannii MDR-ZJ06   3 3
No Yes Acinetobacter baumannii AB0057   3 3
No Yes Acinetobacter baumannii ACICU   3 3
No Yes Acinetobacter radioresistens SH164   2 2
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   3 3
No Yes Moniliophthora perniciosa FA553 (Genome survey)   8 8
No Yes Wolbachia endosymbiont of Brugia malayi v1.0 (Broad Institute)   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   6 6
No Yes 3_050719R (meta-genome)   3 3
No Yes 4_050719Q (meta-genome)   3 3
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   4 4
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   3 3
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   5 5
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   15 15
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   69 69
No Yes Crater Hills (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   34 34
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   9 9
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   8 8
No Yes Dump bottom (Dump bottom) (meta-genome)   27 27
No Yes Dump top (Dump top) (meta-genome)   37 37
No Yes Endophytic microbiome from Rice (meta-genome)   21 21
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   5 5
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   6 6
No Yes Fungus garden combined (combined) (meta-genome)   20 20
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   39 39
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   55 55
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   17 17
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   15 15
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   37 36
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   8 7
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   5 5
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   22 22
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   25 24
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   12 12
No Yes NCBI 2017_08 genome   60043 59921
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   33 33
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   22 22
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   21 21
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   21 21
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   7 7
No Yes Sludge/US, Jazz Assembly (meta-genome)   4 4
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   28 28
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   59 59
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   220 219
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   108 108
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   66 66
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   56 56
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   80 80
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   811 808
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   8 8
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   65 65
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   10 10
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   21275 21200
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   438 438
No Yes NCBI plasmid sequences (Plasmids)   126 126
No Yes PDB chains (SCOP 1.75) (PDB)   13 13
No Yes Protein Data Bank (all PDB sequenc)   448 448
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1286 1286
No Yes TargetDB (Targets)   5 5

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