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Synaptotagmin-like (S variant) family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 19 significant domains in 17 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1a25A   1.07e-40   0.0000221   33-137   1a25 A:  
1dqvA   3.37e-43   0.0000405   144-274   1dqv A:425-569  
  3.82e-43   0.0000661   22-144   1dqv A:295-424  
1dsyA   2.69e-42   0.0000211   19-116   1dsy A:  
1rh8A   3.14e-42   0.0000279   20-138   1rh8 A:  
1ugkA   1.96e-33   0.000026   3-123   1ugk A:  
1v27A   4.08e-34   0.0000112   3-136   1v27 A:  
1w15A   1.95e-34   0.0000102   16-150   1w15 A:  
1wfjA   2.28e-28   0.000000831   5-132   1wfj A:  
1wfmA   2.62e-26   0.00000047   3-135   1wfm A:  
2bwqA   7.38e-33   0.0000241   4-129   1v27 A:  
 
Weak hits:
1bynA   3.77e-51   0.0004   9-125   1rsy A:  
1k5wA   1.15e-52   0.00011   14-138   1tjx A:  
1rsyA   7.7e-51   0.0004   34-150   1rsy A:  
1uowA   1.38e-52   0.00011   21-145   1tjx A:  
2cm5A   5.17e-48   0.00092   29-159   3rpb A:  
2r83A   6.98e-52   0.00011   146-270   1tjx A:  
  2.55e-50   0.0004   11-127   1rsy A:  
3rpbA   2.84e-48   0.00092   7-137   3rpb A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   36771 36771
No Yes Homo sapiens 76_38 Human 99 77
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 27 19
No Yes Gorilla gorilla 76_3.1 Western gorilla 40 30
No Yes Pongo abelii 76_2 Sumatran orangutan 26 19
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 27 20
No Yes Papio anubis 76 Olive baboon 32 23
No Yes Macaca mulatta 76_1 Rhesus monkey 50 40
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 62 46
No Yes Otolemur garnettii 76_3 Small-eared galago 31 22
No Yes Microcebus murinus 76_1 Gray mouse lemur 20 13
No Yes Rattus norvegicus 76_5.0 Norway rat 43 35
No Yes Mus musculus 76_38 House mouse 63 46
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 25 18
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 30 24
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 32 22
No Yes Cavia porcellus 76_3 Domestic guinea pig 30 21
No Yes Oryctolagus cuniculus 76_2 Rabbit 25 19
No Yes Ochotona princeps 76 American pika 20 17
No Yes Tupaia belangeri 76 Northern tree shrew 16 12
No Yes Sus scrofa 76_10.2 Pig 28 20
No Yes Bos taurus 76_3.1 Cattle 31 22
No Yes Ovis aries 76_3.1 Sheep 30 22
No Yes Vicugna pacos 76_1 Alpaca 16 12
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 27 19
No Yes Mustela putorius furo 76_1.0 Domestic ferret 31 22
No Yes Ailuropoda melanoleuca 76_1 Giant panda 30 22
No Yes Canis familiaris 76_3.1 Dog 34 25
No Yes Felis catus 76_6.2 Domestic cat 35 26
No Yes Equus caballus 76_2 Horse 37 27
No Yes Myotis lucifugus 76_2.0 Little brown bat 27 21
No Yes Pteropus vampyrus 76_1 Large flying fox 26 18
No Yes Sorex araneus 76_1 European shrew 15 10
No Yes Erinaceus europaeus 76 Western European hedgehog 14 11
No Yes Procavia capensis 76_1 Cape rock hyrax 22 17
No Yes Loxodonta africana 76_3 African savanna elephant 43 31
No Yes Echinops telfairi 76 Small Madagascar hedgehog 18 14
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 33 26
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 20 15
No Yes Macropus eugenii 76_1.0 Tammar wallaby 17 13
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 30 21
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 23 16
No Yes Ornithorhynchus anatinus 76_5 Platypus 24 20
No Yes Saccoglossus kowalevskii v3.0   12 8
No Yes Petromyzon marinus 76_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 76_2 Turkey 24 17
No Yes Gallus gallus 76_4 Chicken 28 19
No Yes Anas platyrhynchos 76_1.0 Mallard 24 17
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 28 19
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 24 16
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 30 21
No Yes Anolis carolinensis 76_2.0 Green anole 30 21
No Yes Xenopus laevis African clawed frog 19 13
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 25 19
No Yes Latimeria chalumnae 76_1 Coelacanth 30 21
No Yes Lepisosteus oculatus 76 Spotted gar 31 22
No Yes Gadus morhua 76_1 Atlantic cod 40 31
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 47 38
No Yes Takifugu rubripes 76_4 Torafugu 149 120
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 50 37
No Yes Oryzias latipes 76_1 Japanese medaka 47 35
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 47 35
No Yes Poecilia formosa 76 Amazon molly 47 34
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 61 44
No Yes Astyanax mexicanus 76 Mexican tetra 47 34
No Yes Danio rerio 76_9 Zebrafish 73 51
No Yes Oikopleura dioica   9 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 2
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 10 9
No Yes Adineta vaga   18 14
No Yes Octopus bimaculoides 280   9 7
No Yes Crassostrea gigas 22 Pacific oyster 11 8
No Yes Lottia gigantea Owl limpet 10 9
No Yes Helobdella robusta   15 11
No Yes Capitella sp. I   10 8
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 4
No Yes Heliconius melpomene Postman butterfly 4 4
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 5 4
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 19 14
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 5
No Yes Linepithema humile v1.1 Argentine ant 7 5
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 5
No Yes Solenopsis invicta v.2.2.3 Red fire ant 4 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 7 5
No Yes Atta cephalotes v1.1   6 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 6 5
No Yes Lucilia cuprina Australian sheep blowfly 6 5
No Yes Drosophila grimshawi 1.3   5 4
No Yes Drosophila willistoni 1.3   6 5
No Yes Drosophila pseudoobscura 2.13   6 5
No Yes Drosophila persimilis 1.3   5 4
No Yes Drosophila suzukii   3 3
No Yes Drosophila yakuba 1.3   5 4
No Yes Drosophila simulans 1.3   6 5
No Yes Drosophila sechellia 1.3   5 4
No Yes Drosophila melanogaster 76_5 Fruit fly 32 28
No Yes Drosophila erecta 1.3   6 5
No Yes Drosophila ananassae 1.3   6 5
No Yes Drosophila virilis 1.2   6 5
No Yes Drosophila mojavensis 1.3   6 5
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 4
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 4
No Yes Anopheles darlingi 22 American malaria mosquito 2 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 5 4
No Yes Tribolium castaneum 3.0 Red flour beetle 6 4
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 5
No Yes Acyrthosiphon pisum Pea aphid 4 3
No Yes Rhodnius prolixus 22   5 4
No Yes Daphnia pulex Common water flea 4 3
No Yes Strigamia maritima 22   8 6
No Yes Sarcoptes scabiei   4 3
No Yes Tetranychus urticae Two-spotted spider mite 10 7
No Yes Ixodes scapularis (Preliminary) Black-legged tick 6 5
No Yes Pristionchus pacificus   4 3
No Yes Meloidogyne incognita Southern root-knot nematode 4 3
No Yes Meloidogyne hapla   4 3
No Yes Onchocerca volvulus 22   6 4
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 8 6
No Yes Caenorhabditis japonica   5 3
No Yes Caenorhabditis brenneri   4 3
No Yes Caenorhabditis remanei   6 4
No Yes Caenorhabditis elegans 76_235 Roundworm 11 8
No Yes Caenorhabditis briggsae 2   6 4
No Yes Trichinella spiralis 22   4 3
No Yes Hymenolepis microstoma   7 5
No Yes Echinococcus multilocularis   5 3
No Yes Echinococcus granulosus   5 3
No Yes Taenia solium Pork tapeworm 6 4
No Yes Schistosoma mansoni   8 6
No Yes Acropora digitifera v1.0   3 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 4
No Yes Hydra vulgaris   3 3
No Yes Trichoplax adhaerens   4 3
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 2 2
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 3 3
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 5 5
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 4 4
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 6 6
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 3 3
No Yes Oryza meridionalis 22   3 3
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   4 4
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 3 3
No Yes Oryza sativa v193 Rice 3 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 7 7
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 4 4
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 41 31
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 15 11
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 7
No Yes Ascaris suum Victoria/Ghent Pig roundworm 6 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 11 8
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 109 85
No Yes Homo sapiens (NCBI version) Human 48 34
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 29 21
No Yes Loa loa v3.3 (Request) Eye worm 6 4
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 4 4
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 4
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Homo sapiens 69_37 Human 29 20
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 26 18
No Yes Gorilla gorilla 69_3.1 Western gorilla 31 23
No Yes Pongo abelii 69_2 Sumatran orangutan 25 18
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 27 20
No Yes Macaca mulatta 69_1 Rhesus monkey 30 22
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 29 20
No Yes Otolemur garnettii 69_3 Small-eared galago 30 21
No Yes Microcebus murinus 69_1 Gray mouse lemur 20 13
No Yes Rattus norvegicus 69_3.4 Norway rat 30 22
No Yes Mus musculus 69_38 House mouse 30 22
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 25 18
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 28 22
No Yes Cavia porcellus 69_3 Domestic guinea pig 30 21
No Yes Oryctolagus cuniculus 69_2 Rabbit 24 18
No Yes Ochotona princeps 69 American pika 20 17
No Yes Tupaia belangeri 69 Northern tree shrew 16 12
No Yes Sus scrofa 69_10.2 Pig 26 18
No Yes Bos taurus 69_3.1 Cattle 30 21
No Yes Vicugna pacos 69_1 Alpaca 15 11
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 26 18
No Yes Mustela putorius furo 69_1.0 Domestic ferret 31 22
No Yes Ailuropoda melanoleuca 69_1 Giant panda 29 21
No Yes Canis familiaris 69_3.1 Dog 30 22
No Yes Felis catus 69 Domestic cat 18 12
No Yes Equus caballus 69_2 Horse 31 22
No Yes Myotis lucifugus 69_2.0 Little brown bat 25 19
No Yes Pteropus vampyrus 69_1 Large flying fox 25 17
No Yes Sorex araneus 69_1 European shrew 15 10
No Yes Erinaceus europaeus 69 Western European hedgehog 14 11
No Yes Procavia capensis 69_1 Cape rock hyrax 22 17
No Yes Loxodonta africana 69_3 African savanna elephant 30 21
No Yes Echinops telfairi 69 Small Madagascar hedgehog 18 14
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 17 12
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 19 14
No Yes Macropus eugenii 69_1.0 Tammar wallaby 17 13
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 23 17
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 23 16
No Yes Ornithorhynchus anatinus 69_5 Platypus 22 18
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 8
No Yes Meleagris gallopavo 69_2 Turkey 23 16
No Yes Gallus gallus 69_2 Chicken 22 16
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 28 19
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 27 19
No Yes Anolis carolinensis 69_2.0 Green anole 28 19
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 23 17
No Yes Latimeria chalumnae 69_1 Coelacanth 28 19
No Yes Gadus morhua 69_1 Atlantic cod 40 31
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 37 29
No Yes Takifugu rubripes 69_4 Torafugu 45 33
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 43 32
No Yes Oryzias latipes 69_1 Japanese medaka 40 29
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 46 34
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 45 32
No Yes Danio rerio 69_9 Zebrafish 50 34
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 2
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 6 5
No Yes Caenorhabditis elegans 69_215 Roundworm 6 4
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   20650 16009
No Yes STRING v9.0.5 (STRING)   884 647
No Yes Uniprot 2018_03 genome   8159 6247
No Yes PDB chains (SCOP 1.75) (PDB)   19 17
No Yes Protein Data Bank (all PDB sequenc)   30 26
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   245 245
No Yes TargetDB (Targets)   26 23

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