SUPERFAMILY 1.75 HMM library and genome assignments server

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gamma-Crystallin-like superfamily domain assignments
in
Bacillus weihenstephanensis KBAB4


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Select to display   Genome       Domains   Proteins
No Yes ALL   31862 31862
No Yes Homo sapiens 76_38 Human 39 26
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 21 15
No Yes Gorilla gorilla 76_3.1 Western gorilla 28 20
No Yes Pongo abelii 76_2 Sumatran orangutan 17 13
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 20 14
No Yes Papio anubis 76 Olive baboon 19 15
No Yes Macaca mulatta 76_1 Rhesus monkey 30 22
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 36 25
No Yes Otolemur garnettii 76_3 Small-eared galago 22 16
No Yes Microcebus murinus 76_1 Gray mouse lemur 22 13
No Yes Rattus norvegicus 76_5.0 Norway rat 24 18
No Yes Mus musculus 76_38 House mouse 43 35
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 17 11
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 22 17
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 21 14
No Yes Cavia porcellus 76_3 Domestic guinea pig 22 16
No Yes Oryctolagus cuniculus 76_2 Rabbit 23 17
No Yes Ochotona princeps 76 American pika 20 14
No Yes Tupaia belangeri 76 Northern tree shrew 20 13
No Yes Sus scrofa 76_10.2 Pig 21 14
No Yes Bos taurus 76_3.1 Cattle 24 18
No Yes Ovis aries 76_3.1 Sheep 22 16
No Yes Vicugna pacos 76_1 Alpaca 15 9
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 21 14
No Yes Mustela putorius furo 76_1.0 Domestic ferret 21 15
No Yes Ailuropoda melanoleuca 76_1 Giant panda 24 16
No Yes Canis familiaris 76_3.1 Dog 32 24
No Yes Felis catus 76_6.2 Domestic cat 24 16
No Yes Equus caballus 76_2 Horse 23 15
No Yes Myotis lucifugus 76_2.0 Little brown bat 19 12
No Yes Pteropus vampyrus 76_1 Large flying fox 24 15
No Yes Sorex araneus 76_1 European shrew 12 6
No Yes Erinaceus europaeus 76 Western European hedgehog 12 9
No Yes Procavia capensis 76_1 Cape rock hyrax 19 12
No Yes Loxodonta africana 76_3 African savanna elephant 28 18
No Yes Echinops telfairi 76 Small Madagascar hedgehog 17 11
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 22 14
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 17 10
No Yes Macropus eugenii 76_1.0 Tammar wallaby 20 12
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 29 19
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 25 19
No Yes Ornithorhynchus anatinus 76_5 Platypus 24 17
No Yes Petromyzon marinus 76_7.0 Sea lamprey 17 13
No Yes Meleagris gallopavo 76_2 Turkey 26 18
No Yes Gallus gallus 76_4 Chicken 16 11
No Yes Anas platyrhynchos 76_1.0 Mallard 16 10
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 12 8
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 18 12
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 22 16
No Yes Anolis carolinensis 76_2.0 Green anole 15 9
No Yes Xenopus laevis African clawed frog 56 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 72 64
No Yes Latimeria chalumnae 76_1 Coelacanth 43 29
No Yes Lepisosteus oculatus 76 Spotted gar 55 46
No Yes Gadus morhua 76_1 Atlantic cod 50 42
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 49 43
No Yes Takifugu rubripes 76_4 Torafugu 132 111
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 75 65
No Yes Oryzias latipes 76_1 Japanese medaka 60 53
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 31 25
No Yes Poecilia formosa 76 Amazon molly 61 39
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 51 45
No Yes Astyanax mexicanus 76 Mexican tetra 58 42
No Yes Danio rerio 76_9 Zebrafish 100 90
No Yes Oikopleura dioica   2 2
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Adineta vaga   1 1
No Yes Capitella sp. I   1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Pristionchus pacificus   4 4
No Yes Schistosoma mansoni   2 2
No Yes Mnemiopsis leidyi Sea walnut 11 11
No Yes Acropora digitifera v1.0   4 4
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Sphaerobolus stellatus v1.0   3 3
No Yes Heterobasidion annosum   1 1
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   5 5
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Stagonospora nodorum   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Dictyostelium discoideum   2 2
No Yes Dictyostelium purpureum   2 2
No Yes Selaginella moellendorffii   20 20
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 9 9
No Yes Triticum aestivum 22 Bread wheat 2 2
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Panicum virgatum v202 Switchgrass 5 5
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 2 2
No Yes Sorghum bicolor Sorghum 2 2
No Yes Amborella trichopoda 22   2 2
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   4 4
No Yes Pythium ultimum v1.7-2   4 4
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   1 1
No Yes Paramecium tetraurelia   51 50
No Yes Tetrahymena thermophila SB210 1   11 11
No Yes Ichthyophthirius multifiliis strain G5   4 4
No Yes Guillardia theta CCMP2712 v1.0   3 3
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces bingchenggensis BCW-1   4 4
No Yes Streptomyces scabiei 87.22   4 4
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Kribbella flavida DSM 17836   2 2
No Yes Microbacterium testaceum StLB037   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   3 3
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Niastella koreensis GR20-10   8 6
No Yes Chitinophaga pinensis DSM 2588   10 8
No Yes Fibrella aestuarina   3 2
No Yes Bacteroides fragilis YCH46   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Dictyoglomus thermophilum H-6-12   2 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   2 1
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Haliangium ochraceum DSM 14365   3 2
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Stigmatella aurantiaca DW4/3-1   7 6
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 1
No Yes Myxococcus fulvus HW-1   2 2
No Yes Azoarcus sp. KH32C   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter crescentus NA1000   2 2
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Maricaulis maris MCS10   2 1
No Yes Hyphomonas neptunium ATCC 15444   2 2
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Pelagibacterium halotolerans B2   2 2
No Yes Methylocystis sp. SC2   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   4 4
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio cholerae O395   2 2
No Yes Photobacterium profundum SS9   4 2
No Yes Psychromonas ingrahamii 37   3 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Marinomonas posidonica IVIA-Po-181   2 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Edwardsiella ictaluri 93-146   2 2
No Yes Edwardsiella tarda EIB202   2 2
No Yes Rahnella sp. Y9602   1 1
No Yes Yersinia pseudotuberculosis IP 31758   4 2
No Yes Yersinia pestis Pestoides F   3 2
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   5 3
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 113 103
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   2 2
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Paenibacillus sp. Y412MC10   3 3
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Echinicola vietnamensis DSM 17526   2 2
No Yes Sorangium cellulosum So0157-2   4 3
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Caulobacter crescentus CB15   2 2
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio fischeri ES114   2 2
No Yes Vibrio cholerae M66-2   2 1
No Yes Vibrio cholerae O395   2 2
No Yes Vibrio cholerae IEC224   2 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   2 1
No Yes Vibrio cholerae MJ-1236   2 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Edwardsiella tarda C07-087   2 2
No Yes Edwardsiella tarda FL6-60   2 2
No Yes Rahnella aquatilis HX2   2 1
No Yes Yersinia pseudotuberculosis PB1/+   3 2
No Yes Yersinia pseudotuberculosis YPIII   4 3
No Yes Yersinia pseudotuberculosis IP 32953   3 2
No Yes Yersinia pestis biovar Microtus str. 91001   3 2
No Yes Yersinia pestis A1122   3 2
No Yes Yersinia pestis Z176003   3 2
No Yes Yersinia pestis D182038   3 2
No Yes Yersinia pestis D106004   3 2
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   3 2
No Yes Yersinia pestis Nepal516   3 2
No Yes Yersinia pestis Antiqua   3 2
No Yes Yersinia pestis Angola   3 2
No Yes Yersinia pestis CO92   3 2
No Yes Yersinia pestis KIM10+   3 2
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   4 3
No Yes Yersinia enterocolitica subsp. palearctica Y11   6 4
No Yes Homo sapiens 75_37 (old version GRC) Human 39 27
No Yes Homo sapiens (NCBI version) Human 26 18
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 23 17
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Homo sapiens 69_37 Human 21 15
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 21 15
No Yes Gorilla gorilla 69_3.1 Western gorilla 21 15
No Yes Pongo abelii 69_2 Sumatran orangutan 17 13
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 19 13
No Yes Macaca mulatta 69_1 Rhesus monkey 22 16
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 21 15
No Yes Otolemur garnettii 69_3 Small-eared galago 22 16
No Yes Microcebus murinus 69_1 Gray mouse lemur 22 13
No Yes Rattus norvegicus 69_3.4 Norway rat 18 12
No Yes Mus musculus 69_38 House mouse 23 17
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 17 11
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 21 16
No Yes Cavia porcellus 69_3 Domestic guinea pig 20 14
No Yes Oryctolagus cuniculus 69_2 Rabbit 21 15
No Yes Ochotona princeps 69 American pika 20 14
No Yes Tupaia belangeri 69 Northern tree shrew 20 13
No Yes Sus scrofa 69_10.2 Pig 14 11
No Yes Bos taurus 69_3.1 Cattle 23 17
No Yes Vicugna pacos 69_1 Alpaca 15 9
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 21 14
No Yes Mustela putorius furo 69_1.0 Domestic ferret 21 15
No Yes Ailuropoda melanoleuca 69_1 Giant panda 22 14
No Yes Canis familiaris 69_3.1 Dog 20 16
No Yes Felis catus 69 Domestic cat 19 14
No Yes Equus caballus 69_2 Horse 20 14
No Yes Myotis lucifugus 69_2.0 Little brown bat 18 11
No Yes Pteropus vampyrus 69_1 Large flying fox 24 15
No Yes Sorex araneus 69_1 European shrew 12 6
No Yes Erinaceus europaeus 69 Western European hedgehog 12 9
No Yes Procavia capensis 69_1 Cape rock hyrax 19 12
No Yes Loxodonta africana 69_3 African savanna elephant 21 15
No Yes Echinops telfairi 69 Small Madagascar hedgehog 17 11
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 19 12
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 17 10
No Yes Macropus eugenii 69_1.0 Tammar wallaby 20 12
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 16
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 24 18
No Yes Ornithorhynchus anatinus 69_5 Platypus 19 14
No Yes Petromyzon marinus 69_7.0 Sea lamprey 14 12
No Yes Meleagris gallopavo 69_2 Turkey 17 12
No Yes Gallus gallus 69_2 Chicken 18 12
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 12 8
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 18 14
No Yes Anolis carolinensis 69_2.0 Green anole 15 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 70 62
No Yes Latimeria chalumnae 69_1 Coelacanth 43 29
No Yes Gadus morhua 69_1 Atlantic cod 46 38
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 44 38
No Yes Takifugu rubripes 69_4 Torafugu 40 32
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 48 42
No Yes Oryzias latipes 69_1 Japanese medaka 39 33
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 31 25
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 47 41
No Yes Danio rerio 69_9 Zebrafish 68 62
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   3 3
No Yes 5_050719P (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   3 3
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 6
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   5 5
No Yes NCBI 2017_08 genome   15994 12520
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   5 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   11 10
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   8 8
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   4 4
No Yes STRING v9.0.5 (STRING)   836 663
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   6 6
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   8220 6715
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   12 11
No Yes NCBI plasmid sequences (Plasmids)   37 37
No Yes NCBI viral sequences (Viral)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   29 28
No Yes Protein Data Bank (all PDB sequenc)   143 141
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   533 533
No Yes TargetDB (Targets)   25 13
No Yes UniProt viral sequences (Viral)   4 4

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