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Crystallins/Ca-binding development proteins family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 24 significant domains in 23 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ag4A   1.39e-22   0.0000401   17-97   1hdf A:  
1bd7A   1.25e-56   0.000000209   2-176   1bd7 A:  
1hdfA   3.84e-22   0.00000926   16-96   1hdf A:  
1npsA   1.93e-27   0.000043   2-87   1nps A:  
1prsA   2.01e-26   0.000043   3-88   1nps A:  
  9.02e-23   0.0000488   91-172   1prr A:91-173  
 
Weak hits:
1a7hA   5.21e-44   0.00033   2-84   1a7h A:  
1dslA   8.07e-52   0.062   2-84   1amm A:86-174  
1e7nA   6.4e-40   0.00031   16-99   1bd7 A:  
1gamA   7.33e-51   0.062   2-84   1amm A:86-174  
1ha4A   1.39e-44   0.00028   1-85   1ha4 A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   11302 11302
No Yes Homo sapiens 76_38 Human 16 16
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 76_3.1 Western gorilla 14 14
No Yes Pongo abelii 76_2 Sumatran orangutan 9 9
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 11 11
No Yes Papio anubis 76 Olive baboon 11 11
No Yes Macaca mulatta 76_1 Rhesus monkey 15 15
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 18 18
No Yes Otolemur garnettii 76_3 Small-eared galago 12 12
No Yes Microcebus murinus 76_1 Gray mouse lemur 9 9
No Yes Rattus norvegicus 76_5.0 Norway rat 14 14
No Yes Mus musculus 76_38 House mouse 25 25
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 8 8
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 12 12
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 10 10
No Yes Cavia porcellus 76_3 Domestic guinea pig 12 12
No Yes Oryctolagus cuniculus 76_2 Rabbit 13 13
No Yes Ochotona princeps 76 American pika 10 10
No Yes Tupaia belangeri 76 Northern tree shrew 6 6
No Yes Sus scrofa 76_10.2 Pig 10 10
No Yes Bos taurus 76_3.1 Cattle 14 14
No Yes Ovis aries 76_3.1 Sheep 11 11
No Yes Vicugna pacos 76_1 Alpaca 6 6
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 9
No Yes Mustela putorius furo 76_1.0 Domestic ferret 12 12
No Yes Ailuropoda melanoleuca 76_1 Giant panda 14 13
No Yes Canis familiaris 76_3.1 Dog 19 19
No Yes Felis catus 76_6.2 Domestic cat 14 12
No Yes Equus caballus 76_2 Horse 11 11
No Yes Myotis lucifugus 76_2.0 Little brown bat 8 8
No Yes Pteropus vampyrus 76_1 Large flying fox 11 11
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 5 5
No Yes Procavia capensis 76_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 76_3 African savanna elephant 10 10
No Yes Echinops telfairi 76 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 11 9
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 16 14
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 14 14
No Yes Ornithorhynchus anatinus 76_5 Platypus 11 11
No Yes Petromyzon marinus 76_7.0 Sea lamprey 5 5
No Yes Meleagris gallopavo 76_2 Turkey 12 12
No Yes Gallus gallus 76_4 Chicken 10 10
No Yes Anas platyrhynchos 76_1.0 Mallard 8 8
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 6 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 9 9
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 9
No Yes Anolis carolinensis 76_2.0 Green anole 4 4
No Yes Xenopus laevis African clawed frog 54 54
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 67 63
No Yes Latimeria chalumnae 76_1 Coelacanth 34 26
No Yes Lepisosteus oculatus 76 Spotted gar 45 42
No Yes Gadus morhua 76_1 Atlantic cod 30 30
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 34 34
No Yes Takifugu rubripes 76_4 Torafugu 86 85
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 52 52
No Yes Oryzias latipes 76_1 Japanese medaka 41 41
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 16
No Yes Poecilia formosa 76 Amazon molly 47 32
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 35 35
No Yes Astyanax mexicanus 76 Mexican tetra 43 32
No Yes Danio rerio 76_9 Zebrafish 75 75
No Yes Myxococcus xanthus DK 1622   2 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 100 96
No Yes Homo sapiens 75_37 (old version GRC) Human 17 17
No Yes Homo sapiens (NCBI version) Human 11 11
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 13 13
No Yes Homo sapiens 69_37 Human 11 11
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 69_3.1 Western gorilla 11 11
No Yes Pongo abelii 69_2 Sumatran orangutan 9 9
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 10 10
No Yes Macaca mulatta 69_1 Rhesus monkey 11 11
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 11 11
No Yes Otolemur garnettii 69_3 Small-eared galago 12 12
No Yes Microcebus murinus 69_1 Gray mouse lemur 9 9
No Yes Rattus norvegicus 69_3.4 Norway rat 9 9
No Yes Mus musculus 69_38 House mouse 13 13
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 8 8
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 11 11
No Yes Cavia porcellus 69_3 Domestic guinea pig 10 10
No Yes Oryctolagus cuniculus 69_2 Rabbit 11 11
No Yes Ochotona princeps 69 American pika 10 10
No Yes Tupaia belangeri 69 Northern tree shrew 6 6
No Yes Sus scrofa 69_10.2 Pig 8 8
No Yes Bos taurus 69_3.1 Cattle 13 13
No Yes Vicugna pacos 69_1 Alpaca 6 6
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 9
No Yes Mustela putorius furo 69_1.0 Domestic ferret 12 12
No Yes Ailuropoda melanoleuca 69_1 Giant panda 12 11
No Yes Canis familiaris 69_3.1 Dog 14 14
No Yes Felis catus 69 Domestic cat 10 10
No Yes Equus caballus 69_2 Horse 10 10
No Yes Myotis lucifugus 69_2.0 Little brown bat 8 8
No Yes Pteropus vampyrus 69_1 Large flying fox 11 11
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 5 5
No Yes Procavia capensis 69_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 69_3 African savanna elephant 9 9
No Yes Echinops telfairi 69 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 6 6
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 15 13
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 69_5 Platypus 8 8
No Yes Petromyzon marinus 69_7.0 Sea lamprey 5 5
No Yes Meleagris gallopavo 69_2 Turkey 9 9
No Yes Gallus gallus 69_2 Chicken 7 7
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 6 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 8 8
No Yes Anolis carolinensis 69_2.0 Green anole 4 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 65 61
No Yes Latimeria chalumnae 69_1 Coelacanth 34 26
No Yes Gadus morhua 69_1 Atlantic cod 26 26
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 29 29
No Yes Takifugu rubripes 69_4 Torafugu 27 26
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 33 33
No Yes Oryzias latipes 69_1 Japanese medaka 26 26
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 16
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 33 33
No Yes Danio rerio 69_9 Zebrafish 54 54
No Yes NCBI 2017_08 genome   5043 5023
No Yes STRING v9.0.5 (STRING)   408 404
No Yes Uniprot 2018_03 genome   2528 2460
No Yes PDB chains (SCOP 1.75) (PDB)   24 23
No Yes Protein Data Bank (all PDB sequenc)   10 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   336 336
No Yes TargetDB (Targets)   5 5

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