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Group II dsDNA viruses VP superfamily domain assignments
in
Hydra vulgaris

Network of domain occurrence in all genomes


Assignment details

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Hydra vulgaris has 7 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|449662874|ref|XP_004205628.1|   5.49e-49   25-245   Major capsid protein vp54  
  2.2e-36   473-617   Major capsid protein vp54  
  0.00000000165   248-306   Major capsid protein vp54  
gi|449662882|ref|XP_004205631.1|   3.75e-42   2-51,240-361,407-432   Major capsid protein vp54  
  4.21e-33   435-577   Major capsid protein vp54  
gi|449662884|ref|XP_004205632.1|   1.1e-44   25-226,341-366   Major capsid protein vp54  
  1.1e-28   368-557   Major capsid protein vp54  

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Select to display   Genome       Domains   Proteins
No Yes ALL   21431 21431
No Yes Hydra vulgaris   7 3
No Yes Sphaeroforma arctica JP610   1 1
No Yes Catenaria anguillulae PL171 v1.0   4 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 2
No Yes Bigelowiella natans CCMP2755 22   2 1
No Yes Cyanophora paradoxa   8 6
No Yes Ectocarpus siliculosus   2 1
No Yes Pythium ultimum v1.7-2   2 2
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   2 1
No Yes Dump top (Dump top) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 2
No Yes NCBI 2017_08 genome   597 301
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   12808 10399
No Yes Global Ocean Sampling Expedition (GOS)   2737 1993
No Yes NCBI viral sequences (Viral)   390 194
No Yes PDB chains (SCOP 1.75) (PDB)   14 7
No Yes Protein Data Bank (all PDB sequenc)   377 193
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   619 576
No Yes UniProt viral sequences (Viral)   3783 3233

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