SUPERFAMILY 1.75 HMM library and genome assignments server

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TNF-like superfamily domain assignments
in
Vibrio fischeri ES114


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Select to display   Genome       Domains   Proteins
No Yes ALL   55327 55327
No Yes Homo sapiens 76_38 Human 145 143
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 54 53
No Yes Gorilla gorilla 76_3.1 Western gorilla 68 65
No Yes Pongo abelii 76_2 Sumatran orangutan 45 44
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 45 43
No Yes Papio anubis 76 Olive baboon 53 51
No Yes Macaca mulatta 76_1 Rhesus monkey 68 66
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 95 92
No Yes Otolemur garnettii 76_3 Small-eared galago 53 51
No Yes Microcebus murinus 76_1 Gray mouse lemur 38 37
No Yes Rattus norvegicus 76_5.0 Norway rat 53 52
No Yes Mus musculus 76_38 House mouse 86 82
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 36 35
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 52 50
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 47 46
No Yes Cavia porcellus 76_3 Domestic guinea pig 50 47
No Yes Oryctolagus cuniculus 76_2 Rabbit 54 53
No Yes Ochotona princeps 76 American pika 36 36
No Yes Tupaia belangeri 76 Northern tree shrew 39 38
No Yes Sus scrofa 76_10.2 Pig 57 56
No Yes Bos taurus 76_3.1 Cattle 55 55
No Yes Ovis aries 76_3.1 Sheep 53 53
No Yes Vicugna pacos 76_1 Alpaca 22 22
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 46 44
No Yes Mustela putorius furo 76_1.0 Domestic ferret 50 49
No Yes Ailuropoda melanoleuca 76_1 Giant panda 57 56
No Yes Canis familiaris 76_3.1 Dog 58 56
No Yes Felis catus 76_6.2 Domestic cat 48 48
No Yes Equus caballus 76_2 Horse 51 50
No Yes Myotis lucifugus 76_2.0 Little brown bat 45 45
No Yes Pteropus vampyrus 76_1 Large flying fox 46 45
No Yes Sorex araneus 76_1 European shrew 23 22
No Yes Erinaceus europaeus 76 Western European hedgehog 31 30
No Yes Procavia capensis 76_1 Cape rock hyrax 38 37
No Yes Loxodonta africana 76_3 African savanna elephant 60 58
No Yes Echinops telfairi 76 Small Madagascar hedgehog 35 35
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 60 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 21 21
No Yes Macropus eugenii 76_1.0 Tammar wallaby 36 36
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 51 50
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 46 46
No Yes Ornithorhynchus anatinus 76_5 Platypus 45 43
No Yes Saccoglossus kowalevskii v3.0   37 37
No Yes Petromyzon marinus 76_7.0 Sea lamprey 20 19
No Yes Meleagris gallopavo 76_2 Turkey 37 37
No Yes Gallus gallus 76_4 Chicken 38 37
No Yes Anas platyrhynchos 76_1.0 Mallard 35 34
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 39 38
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 43 42
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 42 41
No Yes Anolis carolinensis 76_2.0 Green anole 43 42
No Yes Xenopus laevis African clawed frog 38 36
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 42 41
No Yes Latimeria chalumnae 76_1 Coelacanth 58 56
No Yes Lepisosteus oculatus 76 Spotted gar 59 57
No Yes Gadus morhua 76_1 Atlantic cod 65 63
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 65 63
No Yes Takifugu rubripes 76_4 Torafugu 94 90
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 68 66
No Yes Oryzias latipes 76_1 Japanese medaka 64 63
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 78 75
No Yes Poecilia formosa 76 Amazon molly 94 85
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 111 109
No Yes Astyanax mexicanus 76 Mexican tetra 78 76
No Yes Danio rerio 76_9 Zebrafish 113 110
No Yes Oikopleura dioica   8 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 9 8
No Yes Ciona intestinalis 76 Vase tunicate 11 10
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 20 17
No Yes Adineta vaga   13 13
No Yes Octopus bimaculoides 280   10 10
No Yes Crassostrea gigas 22 Pacific oyster 393 346
No Yes Lottia gigantea Owl limpet 16 15
No Yes Helobdella robusta   16 13
No Yes Capitella sp. I   62 39
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 3 3
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 156 154
No Yes Strigamia maritima 22   5 5
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   2 2
No Yes Acropora digitifera v1.0   19 17
No Yes Nematostella vectensis 1.0 Starlet sea anemone 7 6
No Yes Hydra vulgaris   8 8
No Yes Trichoplax adhaerens   1 1
No Yes Monosiga brevicollis   5 4
No Yes Dictyostelium discoideum   1 1
No Yes Cyanophora paradoxa   5 5
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora capsici   1 1
No Yes Symbiodinium minutum clade B1 v1.2   5 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Ethanoligenens harbinense YUAN-3   1 1
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus polymyxa M1   2 2
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus atrophaeus 1942   2 2
No Yes Bacillus subtilis subsp. subtilis str. 168   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   4 4
No Yes Bacillus thuringiensis str. Al Hakam   4 4
No Yes Bacillus cereus 03BB102   4 4
No Yes Bacillus anthracis str. A0248   3 3
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Solitalea canadensis DSM 3403   2 2
No Yes Owenweeksia hongkongensis DSM 17368   2 2
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Krokinobacter sp. 4H-3-7-5   1 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Flavobacterium indicum GPTSA100-9   3 3
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 62 60
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Clostridium acidurici 9a   1 1
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Clostridium perfringens SM101   1 1
No Yes Clostridium perfringens str. 13   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   1 1
No Yes Paenibacillus larvae subsp. larvae DSM 25430   2 2
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   2 2
No Yes Paenibacillus polymyxa E681   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus subtilis PY79   2 2
No Yes Bacillus subtilis XF-1   2 2
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   3 3
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   1 1
No Yes Bacillus subtilis subsp. subtilis str. BSP1   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   2 2
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   4 4
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus toyonensis BCT-7112   2 2
No Yes Bacillus thuringiensis HD-771   3 3
No Yes Bacillus thuringiensis HD-789   3 3
No Yes Bacillus thuringiensis MC28   4 4
No Yes Bacillus thuringiensis serovar chinensis CT-43   2 2
No Yes Bacillus thuringiensis YBT-1518   2 2
No Yes Bacillus thuringiensis Bt407   2 2
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   4 4
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   7 7
No Yes Bacillus thuringiensis serovar finitimus YBT-020   3 3
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   3 3
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   4 4
No Yes Bacillus cereus AH820   3 3
No Yes Bacillus cereus AH187   2 2
No Yes Bacillus cereus B4264   3 3
No Yes Bacillus cereus G9842   3 3
No Yes Bacillus cereus Q1   2 2
No Yes Bacillus cereus F837/76   4 4
No Yes Bacillus cereus NC7401   2 2
No Yes Bacillus cereus E33L   5 5
No Yes Bacillus cereus ATCC 14579   5 5
No Yes Bacillus cereus ATCC 10987   3 3
No Yes Bacillus anthracis str. H9401   4 4
No Yes Bacillus anthracis str. CDC 684   4 4
No Yes Bacillus anthracis str. 'Ames Ancestor'   4 4
No Yes Bacillus anthracis str. Sterne   4 4
No Yes Bacillus anthracis str. Ames   4 4
No Yes Bacillus megaterium WSH-002   2 2
No Yes Bacillus megaterium QM B1551   3 3
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Mannheimia haemolytica USMARC_2286   3 3
No Yes Mannheimia haemolytica M42548   3 3
No Yes Mannheimia haemolytica D174   3 3
No Yes Mannheimia haemolytica D153   3 3
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   2 2
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 155 152
No Yes Homo sapiens (NCBI version) Human 79 77
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 54 51
No Yes Heliconius numata (Incomplete)   1 1
No Yes Homo sapiens 69_37 Human 76 73
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 51 50
No Yes Gorilla gorilla 69_3.1 Western gorilla 50 48
No Yes Pongo abelii 69_2 Sumatran orangutan 44 43
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 43 41
No Yes Macaca mulatta 69_1 Rhesus monkey 49 47
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 51 49
No Yes Otolemur garnettii 69_3 Small-eared galago 53 51
No Yes Microcebus murinus 69_1 Gray mouse lemur 38 37
No Yes Rattus norvegicus 69_3.4 Norway rat 45 43
No Yes Mus musculus 69_38 House mouse 52 50
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 36 35
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 52 50
No Yes Cavia porcellus 69_3 Domestic guinea pig 48 46
No Yes Oryctolagus cuniculus 69_2 Rabbit 47 46
No Yes Ochotona princeps 69 American pika 36 36
No Yes Tupaia belangeri 69 Northern tree shrew 39 38
No Yes Sus scrofa 69_10.2 Pig 50 49
No Yes Bos taurus 69_3.1 Cattle 52 52
No Yes Vicugna pacos 69_1 Alpaca 22 22
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 46 44
No Yes Mustela putorius furo 69_1.0 Domestic ferret 49 48
No Yes Ailuropoda melanoleuca 69_1 Giant panda 49 48
No Yes Canis familiaris 69_3.1 Dog 50 48
No Yes Felis catus 69 Domestic cat 34 34
No Yes Equus caballus 69_2 Horse 50 49
No Yes Myotis lucifugus 69_2.0 Little brown bat 45 45
No Yes Pteropus vampyrus 69_1 Large flying fox 46 45
No Yes Sorex araneus 69_1 European shrew 23 22
No Yes Erinaceus europaeus 69 Western European hedgehog 31 30
No Yes Procavia capensis 69_1 Cape rock hyrax 38 37
No Yes Loxodonta africana 69_3 African savanna elephant 50 49
No Yes Echinops telfairi 69 Small Madagascar hedgehog 35 35
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 26 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 21 21
No Yes Macropus eugenii 69_1.0 Tammar wallaby 36 36
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 44 43
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 45 45
No Yes Ornithorhynchus anatinus 69_5 Platypus 41 39
No Yes Petromyzon marinus 69_7.0 Sea lamprey 20 19
No Yes Meleagris gallopavo 69_2 Turkey 33 33
No Yes Gallus gallus 69_2 Chicken 38 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 37 36
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 38 37
No Yes Anolis carolinensis 69_2.0 Green anole 37 36
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 38 37
No Yes Latimeria chalumnae 69_1 Coelacanth 50 48
No Yes Gadus morhua 69_1 Atlantic cod 53 51
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 59 57
No Yes Takifugu rubripes 69_4 Torafugu 50 47
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 54 52
No Yes Oryzias latipes 69_1 Japanese medaka 54 53
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 78 75
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 94 92
No Yes Danio rerio 69_9 Zebrafish 82 80
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 9 8
No Yes Ciona intestinalis 69 Vase tunicate 11 10
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   8 8
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   25085 24555
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1483 1430
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   15215 14867
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   667 667
No Yes NCBI plasmid sequences (Plasmids)   9 9
No Yes NCBI viral sequences (Viral)   48 48
No Yes PDB chains (SCOP 1.75) (PDB)   40 40
No Yes Protein Data Bank (all PDB sequenc)   545 533
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1295 1295
No Yes TargetDB (Targets)   16 16
No Yes UniProt viral sequences (Viral)   16 16

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