SUPERFAMILY 1.75 HMM library and genome assignments server

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DNA-binding domain of retroviral integrase superfamily domain assignments
in
Aquilegia coerulea v195

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Select to display   Genome       Domains   Proteins
No Yes ALL   48481 48481
No Yes Homo sapiens 76_38 Human 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 8 8
No Yes Homo sapiens 69_37 Human 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes NCBI 2017_08 genome   593 593
No Yes Protozoadb 2010_08 (Protozoadb)   1 1
No Yes STRING v9.0.5 (STRING)   11 11
No Yes Uniprot 2018_03 genome   38273 38272
No Yes NCBI viral sequences (Viral)   23 23
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   80 80
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   112 112
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   9325 9325

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