SUPERFAMILY 1.75 HMM library and genome assignments server

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TIMP-like superfamily domain assignments
in
Clostridium perfringens ATCC 13124


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View all assignments containing a TIMP-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   24363 24363
No Yes Homo sapiens 76_38 Human 59 59
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 19 19
No Yes Gorilla gorilla 76_3.1 Western gorilla 30 30
No Yes Pongo abelii 76_2 Sumatran orangutan 20 20
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 23 23
No Yes Papio anubis 76 Olive baboon 24 24
No Yes Macaca mulatta 76_1 Rhesus monkey 31 31
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 43 43
No Yes Otolemur garnettii 76_3 Small-eared galago 23 23
No Yes Microcebus murinus 76_1 Gray mouse lemur 20 20
No Yes Rattus norvegicus 76_5.0 Norway rat 23 23
No Yes Mus musculus 76_38 House mouse 28 28
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 18 18
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 21 21
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 19 19
No Yes Cavia porcellus 76_3 Domestic guinea pig 23 23
No Yes Oryctolagus cuniculus 76_2 Rabbit 22 22
No Yes Ochotona princeps 76 American pika 17 17
No Yes Tupaia belangeri 76 Northern tree shrew 15 14
No Yes Sus scrofa 76_10.2 Pig 25 25
No Yes Bos taurus 76_3.1 Cattle 25 25
No Yes Ovis aries 76_3.1 Sheep 24 24
No Yes Vicugna pacos 76_1 Alpaca 8 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 21 21
No Yes Mustela putorius furo 76_1.0 Domestic ferret 26 26
No Yes Ailuropoda melanoleuca 76_1 Giant panda 26 26
No Yes Canis familiaris 76_3.1 Dog 32 32
No Yes Felis catus 76_6.2 Domestic cat 21 21
No Yes Equus caballus 76_2 Horse 22 22
No Yes Myotis lucifugus 76_2.0 Little brown bat 25 25
No Yes Pteropus vampyrus 76_1 Large flying fox 19 19
No Yes Sorex araneus 76_1 European shrew 10 10
No Yes Erinaceus europaeus 76 Western European hedgehog 15 13
No Yes Procavia capensis 76_1 Cape rock hyrax 20 18
No Yes Loxodonta africana 76_3 African savanna elephant 26 26
No Yes Echinops telfairi 76 Small Madagascar hedgehog 16 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 26 26
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 10 9
No Yes Macropus eugenii 76_1.0 Tammar wallaby 18 18
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 22 22
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 27 27
No Yes Ornithorhynchus anatinus 76_5 Platypus 17 17
No Yes Saccoglossus kowalevskii v3.0   17 17
No Yes Petromyzon marinus 76_7.0 Sea lamprey 7 7
No Yes Meleagris gallopavo 76_2 Turkey 23 23
No Yes Gallus gallus 76_4 Chicken 25 25
No Yes Anas platyrhynchos 76_1.0 Mallard 19 19
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 22 22
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 20 20
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 25 25
No Yes Anolis carolinensis 76_2.0 Green anole 26 26
No Yes Xenopus laevis African clawed frog 57 57
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 34 34
No Yes Latimeria chalumnae 76_1 Coelacanth 31 31
No Yes Lepisosteus oculatus 76 Spotted gar 35 35
No Yes Gadus morhua 76_1 Atlantic cod 33 33
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 31 31
No Yes Takifugu rubripes 76_4 Torafugu 92 92
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 47 47
No Yes Oryzias latipes 76_1 Japanese medaka 36 36
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 28 28
No Yes Poecilia formosa 76 Amazon molly 35 35
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 40 40
No Yes Astyanax mexicanus 76 Mexican tetra 33 33
No Yes Danio rerio 76_9 Zebrafish 43 43
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 18 17
No Yes Ciona intestinalis 76 Vase tunicate 13 13
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 29 27
No Yes Adineta vaga   6 6
No Yes Octopus bimaculoides 280   3 3
No Yes Crassostrea gigas 22 Pacific oyster 27 26
No Yes Lottia gigantea Owl limpet 7 7
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   3 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   4 3
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 9 9
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   3 3
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   4 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 3 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 3 3
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 3
No Yes Tribolium castaneum 3.0 Red flour beetle 2 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   7 7
No Yes Sarcoptes scabiei   4 4
No Yes Tetranychus urticae Two-spotted spider mite 4 4
No Yes Ixodes scapularis (Preliminary) Black-legged tick 5 5
No Yes Pristionchus pacificus   11 11
No Yes Meloidogyne incognita Southern root-knot nematode 10 10
No Yes Meloidogyne hapla   10 9
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   4 4
No Yes Caenorhabditis remanei   4 4
No Yes Caenorhabditis elegans 76_235 Roundworm 6 6
No Yes Caenorhabditis briggsae 2   4 4
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   4 4
No Yes Echinococcus granulosus   4 4
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   3 2
No Yes Mnemiopsis leidyi Sea walnut 6 6
No Yes Acropora digitifera v1.0   11 10
No Yes Nematostella vectensis 1.0 Starlet sea anemone 16 13
No Yes Hydra vulgaris   6 6
No Yes Trichoplax adhaerens   5 5
No Yes Sphaeroforma arctica JP610   4 4
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   2 2
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 53 53
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 7 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 8
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 4
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Thermobacillus composti KWC4   3 3
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 66 66
No Yes Homo sapiens (NCBI version) Human 28 28
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 21 21
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 3 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes Homo sapiens 69_37 Human 33 33
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 19 19
No Yes Gorilla gorilla 69_3.1 Western gorilla 24 24
No Yes Pongo abelii 69_2 Sumatran orangutan 20 20
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 22 22
No Yes Macaca mulatta 69_1 Rhesus monkey 26 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 22 22
No Yes Otolemur garnettii 69_3 Small-eared galago 22 22
No Yes Microcebus murinus 69_1 Gray mouse lemur 20 20
No Yes Rattus norvegicus 69_3.4 Norway rat 20 20
No Yes Mus musculus 69_38 House mouse 21 21
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 18 18
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 21 21
No Yes Cavia porcellus 69_3 Domestic guinea pig 21 21
No Yes Oryctolagus cuniculus 69_2 Rabbit 20 20
No Yes Ochotona princeps 69 American pika 17 17
No Yes Tupaia belangeri 69 Northern tree shrew 15 14
No Yes Sus scrofa 69_10.2 Pig 23 23
No Yes Bos taurus 69_3.1 Cattle 24 24
No Yes Vicugna pacos 69_1 Alpaca 8 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 21 21
No Yes Mustela putorius furo 69_1.0 Domestic ferret 25 25
No Yes Ailuropoda melanoleuca 69_1 Giant panda 26 26
No Yes Canis familiaris 69_3.1 Dog 25 25
No Yes Felis catus 69 Domestic cat 11 11
No Yes Equus caballus 69_2 Horse 20 20
No Yes Myotis lucifugus 69_2.0 Little brown bat 25 25
No Yes Pteropus vampyrus 69_1 Large flying fox 19 19
No Yes Sorex araneus 69_1 European shrew 10 10
No Yes Erinaceus europaeus 69 Western European hedgehog 15 13
No Yes Procavia capensis 69_1 Cape rock hyrax 20 18
No Yes Loxodonta africana 69_3 African savanna elephant 23 23
No Yes Echinops telfairi 69 Small Madagascar hedgehog 16 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 12 12
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 10 9
No Yes Macropus eugenii 69_1.0 Tammar wallaby 18 18
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 21 21
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 25 25
No Yes Ornithorhynchus anatinus 69_5 Platypus 16 16
No Yes Petromyzon marinus 69_7.0 Sea lamprey 7 7
No Yes Meleagris gallopavo 69_2 Turkey 20 20
No Yes Gallus gallus 69_2 Chicken 18 18
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 21 21
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 21 21
No Yes Anolis carolinensis 69_2.0 Green anole 21 21
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 30 30
No Yes Latimeria chalumnae 69_1 Coelacanth 28 28
No Yes Gadus morhua 69_1 Atlantic cod 24 24
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 30 30
No Yes Takifugu rubripes 69_4 Torafugu 33 33
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 34 34
No Yes Oryzias latipes 69_1 Japanese medaka 29 29
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 28 28
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 33 33
No Yes Danio rerio 69_9 Zebrafish 34 34
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 7
No Yes Ciona intestinalis 69 Vase tunicate 12 12
No Yes Drosophila melanogaster 69_5 Fruit fly 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   2 2
No Yes NCBI 2017_08 genome   11398 11326
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   748 740
No Yes Uniprot 2018_03 genome   6632 6557
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   106 106
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   207 207
No Yes TargetDB (Targets)   21 21

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