SUPERFAMILY 1.75 HMM library and genome assignments server

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Actin-crosslinking proteins superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   23974 23974
No Yes Homo sapiens 76_38 Human 27 16
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 18 6
No Yes Gorilla gorilla 76_3.1 Western gorilla 19 12
No Yes Pongo abelii 76_2 Sumatran orangutan 13 7
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 7 4
No Yes Papio anubis 76 Olive baboon 13 4
No Yes Macaca mulatta 76_1 Rhesus monkey 14 5
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 23 8
No Yes Otolemur garnettii 76_3 Small-eared galago 13 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 8 2
No Yes Rattus norvegicus 76_5.0 Norway rat 10 4
No Yes Mus musculus 76_38 House mouse 19 8
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 8 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 14 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 14 6
No Yes Cavia porcellus 76_3 Domestic guinea pig 13 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 8 4
No Yes Ochotona princeps 76 American pika 9 3
No Yes Tupaia belangeri 76 Northern tree shrew 6 4
No Yes Sus scrofa 76_10.2 Pig 17 5
No Yes Bos taurus 76_3.1 Cattle 17 6
No Yes Ovis aries 76_3.1 Sheep 16 5
No Yes Vicugna pacos 76_1 Alpaca 5 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 13 4
No Yes Mustela putorius furo 76_1.0 Domestic ferret 13 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 13 4
No Yes Canis familiaris 76_3.1 Dog 16 6
No Yes Felis catus 76_6.2 Domestic cat 13 5
No Yes Equus caballus 76_2 Horse 16 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 5 2
No Yes Pteropus vampyrus 76_1 Large flying fox 11 4
No Yes Sorex araneus 76_1 European shrew 4 2
No Yes Erinaceus europaeus 76 Western European hedgehog 8 3
No Yes Procavia capensis 76_1 Cape rock hyrax 12 4
No Yes Loxodonta africana 76_3 African savanna elephant 16 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 5 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 9 3
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 13 4
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 13 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 6 3
No Yes Saccoglossus kowalevskii v3.0   5 2
No Yes Meleagris gallopavo 76_2 Turkey 4 3
No Yes Gallus gallus 76_4 Chicken 9 3
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 9 4
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 9 3
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 16 5
No Yes Anolis carolinensis 76_2.0 Green anole 10 4
No Yes Xenopus laevis African clawed frog 30 9
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 9 3
No Yes Latimeria chalumnae 76_1 Coelacanth 19 6
No Yes Lepisosteus oculatus 76 Spotted gar 8 3
No Yes Gadus morhua 76_1 Atlantic cod 16 5
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 21 6
No Yes Takifugu rubripes 76_4 Torafugu 18 6
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 22 7
No Yes Oryzias latipes 76_1 Japanese medaka 19 6
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 5
No Yes Poecilia formosa 76 Amazon molly 16 5
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 20 6
No Yes Astyanax mexicanus 76 Mexican tetra 12 4
No Yes Danio rerio 76_9 Zebrafish 15 5
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 4 2
No Yes Ciona intestinalis 76 Vase tunicate 4 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 12 5
No Yes Adineta vaga   27 13
No Yes Octopus bimaculoides 280   5 3
No Yes Crassostrea gigas 22 Pacific oyster 13 4
No Yes Lottia gigantea Owl limpet 5 2
No Yes Helobdella robusta   10 3
No Yes Capitella sp. I   5 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 5 2
No Yes Heliconius melpomene Postman butterfly 4 2
No Yes Bombyx mori Domestic silkworm 5 5
No Yes Nasonia vitripennis Jewel wasp 5 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 7 4
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 5 2
No Yes Linepithema humile v1.1 Argentine ant 5 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 4 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 5 2
No Yes Atta cephalotes v1.1   5 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 2
No Yes Lucilia cuprina Australian sheep blowfly 5 2
No Yes Drosophila grimshawi 1.3   5 2
No Yes Drosophila willistoni 1.3   5 2
No Yes Drosophila pseudoobscura 2.13   5 2
No Yes Drosophila persimilis 1.3   5 2
No Yes Drosophila suzukii   8 3
No Yes Drosophila yakuba 1.3   6 3
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   5 2
No Yes Drosophila melanogaster 76_5 Fruit fly 25 7
No Yes Drosophila erecta 1.3   5 2
No Yes Drosophila ananassae 1.3   5 2
No Yes Drosophila virilis 1.2   5 2
No Yes Drosophila mojavensis 1.3   5 2
No Yes Megaselia scalaris 22   3 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 6 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 3
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 5 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 5 2
No Yes Acyrthosiphon pisum Pea aphid 5 2
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 5 2
No Yes Strigamia maritima 22   5 2
No Yes Sarcoptes scabiei   4 2
No Yes Tetranychus urticae Two-spotted spider mite 3 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 5 2
No Yes Pristionchus pacificus   65 57
No Yes Meloidogyne incognita Southern root-knot nematode 5 5
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Caenorhabditis japonica   5 5
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 5 5
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   3 2
No Yes Echinococcus multilocularis   4 2
No Yes Echinococcus granulosus   4 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   4 2
No Yes Mnemiopsis leidyi Sea walnut 6 4
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   2 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 2
No Yes Hydra vulgaris   21 10
No Yes Amphimedon queenslandica   5 2
No Yes Trichoplax adhaerens   2 2
No Yes Proterospongia sp. ATCC 50818   11 5
No Yes Monosiga brevicollis   9 3
No Yes Capsaspora owczarzaki ATCC 30864   4 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   8 6
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   4 4
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 9 7
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   5 3
No Yes Heterobasidion annosum   5 4
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   1 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   2 2
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 3
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   3 3
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   3 3
No Yes Cochliobolus carbonum 26-R-13 v1.0   3 3
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   3 3
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   7 6
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   7 7
No Yes Dictyostelium purpureum   3 3
No Yes Entamoeba invadens 1.2   9 5
No Yes Selaginella moellendorffii   23 20
No Yes Pinus taeda Loblolly pine 11 11
No Yes Picea abies Norway spruce 7 7
No Yes Eucalyptus grandis v201 Rose gum 15 10
No Yes Theobroma cacao B97-61/B2 v1 Cacao 7 7
No Yes Gossypium raimondii v221   20 19
No Yes Citrus clementina v165   8 6
No Yes Citrus sinensis v154 Sweet orange 11 11
No Yes Thellungiella halophila v173   8 5
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 20 17
No Yes Capsella rubella v183   10 7
No Yes Arabidopsis lyrata Lyrate rockcress 8 6
No Yes Arabidopsis thaliana 10 Thale cress 9 7
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 19 16
No Yes Phaseolus vulgaris v186 French bean 11 9
No Yes Glycine max v109 Soybean 17 14
No Yes Cucumis sativus v122 Cucumber 9 6
No Yes Fragaria vesca Wild strawberry 8 6
No Yes Malus domestica v196 Apple 11 11
No Yes Prunus persica v139 Peach 7 5
No Yes Linum usitatissimum v200 Flax 10 9
No Yes Manihot esculenta v147 Cassava 8 7
No Yes Populus trichocarpa v156 Black cottonwood 13 10
No Yes Vitis vinifera Wine grape 10 7
No Yes Mimulus guttatus v140 Spotted monkey flower 11 9
No Yes Solanum lycopersicum v.2.3 Tomato 14 10
No Yes Solanum tuberosum Potato 22 16
No Yes Actinidia chinensis Hongyang   9 8
No Yes Aquilegia coerulea v195   5 4
No Yes Triticum urartu 22   15 14
No Yes Triticum aestivum 22 Bread wheat 43 29
No Yes Aegilops tauschii 22   23 22
No Yes Brachypodium distachyon Stiff brome 17 17
No Yes Oryza barthii 22 African wild rice 20 17
No Yes Oryza meridionalis 22   35 31
No Yes Oryza glumaepatula 22   31 23
No Yes Oryza glaberrima African rice 19 17
No Yes Oryza punctata 22   31 23
No Yes Oryza nivara 22   22 19
No Yes Oryza brachyantha 22 Malo sina 11 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 21 19
No Yes Oryza sativa v193 Rice 21 19
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 30 30
No Yes Setaria italica v164 Foxtail millet 17 17
No Yes Zea mays subsp. mays Maize 22 22
No Yes Zea mays v181 Maize 24 24
No Yes Sorghum bicolor Sorghum 19 18
No Yes Musa balbisiana Balbis banana 13 11
No Yes Musa acuminata 22 Wild Malaysian banana 8 8
No Yes Amborella trichopoda 22   6 6
No Yes Physcomitrella patens   5 5
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Bigelowiella natans CCMP2755 22   6 4
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   3 3
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 7 6
No Yes Phytophthora sojae 1.1   6 6
No Yes Phytophthora infestans T30-4   8 8
No Yes Phytophthora capsici   2 2
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Fragilariopsis cylindrus   4 2
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Tetrahymena thermophila SB210 1   2 2
No Yes Symbiodinium minutum clade B1 v1.2   9 9
No Yes Naegleria gruberi   13 9
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Thermobispora bispora DSM 43833   2 2
No Yes Nakamurella multipartita DSM 44233   4 4
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   13 9
No Yes Thermobifida fusca YX   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Verrucosispora maris AB-18-032   3 2
No Yes Micromonospora sp. L5   5 3
No Yes Micromonospora aurantiaca ATCC 27029   3 2
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Eubacterium siraeum   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   4 2
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Paenibacillus sp. JDR-2   3 3
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Niastella koreensis GR20-10   4 4
No Yes Chitinophaga pinensis DSM 2588   7 6
No Yes Fibrella aestuarina   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Zobellia galactanivorans   2 2
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Coraliomargarita akajimensis DSM 45221   6 6
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Haliangium ochraceum DSM 14365   3 3
No Yes Stigmatella aurantiaca DW4/3-1   4 4
No Yes Corallococcus coralloides DSM 2259   3 2
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   2 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Photorhabdus asymbiotica   5 4
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Methanohalobium evestigatum Z-7303   2 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 28 10
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 25 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 5 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 4
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 7 6
No Yes Hordeum vulgare 22 Domesticated barley 8 8
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 26 24
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   3 2
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Actinoplanes friuliensis DSM 7358   2 2
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Thermobacillus composti KWC4   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia lata   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Dickeya dadantii 3937   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 45 24
No Yes Homo sapiens (NCBI version) Human 25 14
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 13 4
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   11 11
No Yes Malus x domestica (Duplicate) Apple 11 11
No Yes Ricinus communis (Early assembly) Castor bean 7 6
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   22 17
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 14 10
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 14 10
No Yes Homo sapiens 69_37 Human 18 8
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 18 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 12 5
No Yes Pongo abelii 69_2 Sumatran orangutan 13 7
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 6 3
No Yes Macaca mulatta 69_1 Rhesus monkey 13 4
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 17 5
No Yes Otolemur garnettii 69_3 Small-eared galago 13 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 8 2
No Yes Rattus norvegicus 69_3.4 Norway rat 14 5
No Yes Mus musculus 69_38 House mouse 13 4
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 8 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 14 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 13 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 12 5
No Yes Ochotona princeps 69 American pika 9 3
No Yes Tupaia belangeri 69 Northern tree shrew 6 4
No Yes Sus scrofa 69_10.2 Pig 17 5
No Yes Bos taurus 69_3.1 Cattle 14 5
No Yes Vicugna pacos 69_1 Alpaca 5 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 13 4
No Yes Mustela putorius furo 69_1.0 Domestic ferret 13 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 13 4
No Yes Canis familiaris 69_3.1 Dog 13 4
No Yes Felis catus 69 Domestic cat 12 4
No Yes Equus caballus 69_2 Horse 12 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 5 2
No Yes Pteropus vampyrus 69_1 Large flying fox 11 4
No Yes Sorex araneus 69_1 European shrew 4 2
No Yes Erinaceus europaeus 69 Western European hedgehog 8 3
No Yes Procavia capensis 69_1 Cape rock hyrax 12 4
No Yes Loxodonta africana 69_3 African savanna elephant 11 4
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 3
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 13 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 13 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 6 3
No Yes Meleagris gallopavo 69_2 Turkey 4 3
No Yes Gallus gallus 69_2 Chicken 4 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 9 4
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 12 4
No Yes Anolis carolinensis 69_2.0 Green anole 10 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 9 3
No Yes Latimeria chalumnae 69_1 Coelacanth 16 5
No Yes Gadus morhua 69_1 Atlantic cod 16 5
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 21 6
No Yes Takifugu rubripes 69_4 Torafugu 17 5
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 17 5
No Yes Oryzias latipes 69_1 Japanese medaka 17 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 5
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 16 5
No Yes Danio rerio 69_9 Zebrafish 15 5
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 2
No Yes Ciona intestinalis 69 Vase tunicate 4 2
No Yes Drosophila melanogaster 69_5 Fruit fly 5 2
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes Arabidopsis thaliana 10 Thale cress 8 6
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   9324 6117
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   698 408
No Yes Uniprot 2018_03 genome   7953 5685
No Yes Global Ocean Sampling Expedition (GOS)   43 43
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   28 28
No Yes PDB chains (SCOP 1.75) (PDB)   5 2
No Yes Protein Data Bank (all PDB sequenc)   84 24
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   241 241
No Yes TargetDB (Targets)   34 25
No Yes UniProt viral sequences (Viral)   1 1

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