SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Quinoprotein alcohol dehydrogenase-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 9 significant domains in 9 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1flgA   3.95e-149   0.000000000000143   12-575   1flg A:  
1g72A   7.13e-162   0.00000000000233   12-572   1g72 A:  
1h4iA   3.13e-168   0.000000000000729   7-594   1h4i A:  
1h4jA   2.86e-167   0.000000000000729   7-594   1h4i A:  
1kb0A   8.63e-170   0.000000000000502   24-550   1kb0 A:1-573  
1kv9A   2.5e-173   0.000000000000206   13-567   1kv9 A:1-560  
1lrwA   3.62e-168   0.000000000000484   4-598   1lrw A:  
1w6sA   4.03e-168   0.000000000000747   7-594   1h4i A:  
2ad6A   7.02e-162   0.00000000000233   10-570   1g72 A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Quinoprotein alcohol dehydrogenase-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   74155 74155
No Yes Phytophthora capsici   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Cyclobacterium marinum DSM 745   3 3
No Yes Fibrella aestuarina   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   5 5
No Yes Spirosoma linguale DSM 74   3 3
No Yes Runella slithyformis DSM 19594   3 3
No Yes Sphingobacterium sp. 21   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Opitutus terrae PB90-1   2 2
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   25 25
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Terriglobus saanensis SP1PR4   4 4
No Yes Terriglobus roseus DSM 18391   11 11
No Yes Candidatus Methylomirabilis oxyfera   3 3
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   1 1
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   4 4
No Yes Azoarcus sp. BH72   5 5
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Methylibium petroleiphilum PM1   11 11
No Yes Thiomonas arsenitoxydans   1 1
No Yes Rubrivivax gelatinosus IL144   2 2
No Yes Leptothrix cholodnii SP-6   4 4
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   3 3
No Yes Burkholderia xenovorans LB400   5 5
No Yes Ralstonia eutropha JMP134   4 4
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus necator N-1   4 4
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia pickettii 12D   1 1
No Yes Burkholderia sp. RPE64   4 4
No Yes Burkholderia sp. CCGE1002   5 5
No Yes Burkholderia ambifaria AMMD   2 2
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   4 4
No Yes Delftia sp. Cs1-4   2 2
No Yes Delftia acidovorans SPH-1   2 2
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   2 2
No Yes Variovorax paradoxus S110   5 5
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   2 2
No Yes Comamonas testosteroni CNB-2   4 4
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   4 4
No Yes Bordetella petrii DSM 12804   1 1
No Yes Methylotenera versatilis 301   4 4
No Yes Methylotenera mobilis JLW8   3 3
No Yes Methylovorus sp. MP688   6 6
No Yes Methylovorus glucosetrophus SIP3-4   6 6
No Yes Methylobacillus flagellatus KT   5 5
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   6 6
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium sp. SYK-6   7 7
No Yes Sphingobium japonicum UT26S   6 6
No Yes Sphingobium chlorophenolicum L-1   6 6
No Yes Sphingomonas sp. MM-1   2 2
No Yes Sphingomonas wittichii RW1   11 11
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   3 3
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   8 8
No Yes Ketogulonigenium vulgarum WSH-001   8 8
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   3 3
No Yes Rhodobacter capsulatus SB 1003   2 2
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Tistrella mobilis KA081020-065   2 2
No Yes Rhodospirillum centenum SW   1 1
No Yes Azospirillum lipoferum 4B   5 5
No Yes Azospirillum sp. B510   3 3
No Yes Azospirillum brasilense Sp245   4 4
No Yes Gluconacetobacter xylinus NBRC 3288   3 3
No Yes Granulibacter bethesdensis CGDNIH1   4 4
No Yes Gluconacetobacter diazotrophicus PAl 5   4 4
No Yes Acidiphilium multivorum AIU301   4 4
No Yes Acidiphilium cryptum JF-5   4 4
No Yes Gluconobacter oxydans 621H   6 6
No Yes Acetobacter pasteurianus IFO 3283-01   5 5
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Starkeya novella DSM 506   2 2
No Yes Xanthobacter autotrophicus Py2   2 2
No Yes Methylobacterium chloromethanicum CM4   5 5
No Yes Methylobacterium extorquens AM1   5 5
No Yes Methylobacterium sp. 4-46   4 4
No Yes Methylobacterium populi BJ001   4 4
No Yes Methylobacterium nodulans ORS 2060   4 4
No Yes Methylobacterium radiotolerans JCM 2831   6 6
No Yes Parvibaculum lavamentivorans DS-1   3 3
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Sinorhizobium fredii NGR234   2 2
No Yes Sinorhizobium medicae WSM419   3 3
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Genome sequence of Rhizobium sp. strain IRBG74   2 2
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium tumefaciens str. C58   2 2
No Yes Agrobacterium radiobacter K84   2 2
No Yes Agrobacterium sp. H13-3   2 2
No Yes Agrobacterium vitis S4   2 2
No Yes Mesorhizobium sp. BNC1   4 4
No Yes Mesorhizobium opportunistum WSM2075   3 3
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   3 3
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Methylocella silvestris BL2   7 7
No Yes Beijerinckia indica subsp. indica ATCC 9039   3 3
No Yes Pelagibacterium halotolerans B2   7 7
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   8 8
No Yes Hyphomicrobium denitrificans ATCC 51888   8 8
No Yes Rhodopseudomonas palustris BisA53   3 3
No Yes Bradyrhizobium japonicum USDA 110   6 6
No Yes Bradyrhizobium sp. ORS 278   7 7
No Yes Methylocystis sp. SC2   4 4
No Yes Psychromonas ingrahamii 37   1 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas atlantica T6c   2 2
No Yes Glaciecola sp. 4H-3-7+YE-5   3 3
No Yes Marinobacter adhaerens HP15   2 2
No Yes Marinobacter sp. BSs20148   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   2 2
No Yes Alteromonas sp. SN2   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Chromohalobacter salexigens DSM 3043   2 2
No Yes Halomonas elongata DSM 2581   1 1
No Yes Methylomicrobium alcaliphilum   2 2
No Yes Methylomonas methanica MC09   2 2
No Yes Methylococcus capsulatus str. Bath   2 2
No Yes Frateuria aurantia DSM 6220   4 4
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   4 4
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   4 4
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Rahnella sp. Y9602   2 2
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   3 3
No Yes Serratia sp. AS12   2 2
No Yes Serratia plymuthica AS9   2 2
No Yes Serratia proteamaculans 568   3 3
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Pantoea sp. At-9b   7 7
No Yes Pantoea vagans C9-1   3 3
No Yes Pantoea ananatis LMG 20103   2 2
No Yes Erwinia tasmaniensis Et1/99   2 2
No Yes Erwinia sp. Ejp617   2 2
No Yes Erwinia billingiae Eb661   3 3
No Yes Erwinia pyrifoliae Ep1/96   2 2
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ES15   2 2
No Yes Enterobacteriaceae bacterium strain FGI 57   3 3
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   3 3
No Yes Klebsiella variicola At-22   3 3
No Yes Klebsiella pneumoniae NTUH-K2044   2 2
No Yes Enterobacter aerogenes KCTC 2190   3 3
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   2 2
No Yes Enterobacter asburiae LF7a   2 2
No Yes Enterobacter cloacae subsp. dissolvens SDM   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   5 5
No Yes Pseudomonas sp. UW4   3 3
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   4 4
No Yes Pseudomonas entomophila L48   2 2
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 2
No Yes Pseudomonas stutzeri A1501   5 5
No Yes Pseudomonas fulva 12-X   2 2
No Yes Pseudomonas putida F1   4 4
No Yes Pseudomonas protegens Pf-5   4 4
No Yes Pseudomonas fluorescens SBW25   2 2
No Yes Pseudomonas mendocina ymp   3 3
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Pseudomonas sp. VLB120   3 3
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter sp. PRwf-1   1 1
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Acinetobacter oleivorans DR1   2 2
No Yes Acinetobacter calcoaceticus PHEA-2   2 2
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   2 2
No Yes Methylophaga sp. JAM1   6 6
No Yes Cycloclasticus sp. P1   1 1
No Yes Candidatus Caldiarchaeum subterraneum   2 2
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Emticicia oligotrophica DSM 17448   3 3
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia phenoliruptrix BR3459a   3 3
No Yes Ralstonia pickettii 12J   1 1
No Yes Burkholderia sp. YI23   4 4
No Yes Burkholderia sp. CCGE1003   3 3
No Yes Burkholderia sp. CCGE1001   3 3
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Variovorax paradoxus B4   4 4
No Yes Variovorax paradoxus EPS   3 3
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Rhodobacter sphaeroides KD131   3 3
No Yes Rhodobacter sphaeroides ATCC 17025   3 3
No Yes Rhodobacter sphaeroides 2.4.1   2 2
No Yes Paracoccus aminophilus JCM 7686   2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   4 4
No Yes Gluconobacter oxydans H24   7 7
No Yes Acetobacter pasteurianus 386B   5 5
No Yes Acetobacter pasteurianus IFO 3283-12   5 5
No Yes Acetobacter pasteurianus IFO 3283-01-42C   5 5
No Yes Acetobacter pasteurianus IFO 3283-32   5 5
No Yes Acetobacter pasteurianus IFO 3283-26   5 5
No Yes Acetobacter pasteurianus IFO 3283-22   5 5
No Yes Acetobacter pasteurianus IFO 3283-07   5 5
No Yes Acetobacter pasteurianus IFO 3283-03   5 5
No Yes Methylobacterium extorquens DM4   4 4
No Yes Methylobacterium extorquens PA1   5 5
No Yes Sinorhizobium fredii USDA 257   4 4
No Yes Sinorhizobium fredii HH103   3 3
No Yes Sinorhizobium meliloti 2011   2 2
No Yes Sinorhizobium meliloti GR4   2 2
No Yes Sinorhizobium meliloti Rm41   2 2
No Yes Sinorhizobium meliloti SM11   2 2
No Yes Sinorhizobium meliloti BL225C   2 2
No Yes Sinorhizobium meliloti 1021   2 2
No Yes Rhizobium etli CFN 42   2 2
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   3 3
No Yes Mesorhizobium australicum WSM2073   2 2
No Yes Hyphomicrobium nitrativorans NL23   7 7
No Yes Hyphomicrobium denitrificans 1NES1   9 9
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   4 4
No Yes Bradyrhizobium sp. BTAi1   7 7
No Yes Bradyrhizobium oligotrophicum S58   8 8
No Yes Bradyrhizobium japonicum USDA 6   7 7
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   2 2
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   2 2
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   2 2
No Yes Alcanivorax dieselolei B5   5 5
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   3 3
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   4 4
No Yes Xanthomonas axonopodis pv. citrumelo F1   3 3
No Yes Xanthomonas axonopodis Xac29-1   4 4
No Yes Xanthomonas oryzae pv. oryzicola BLS256   2 2
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   4 4
No Yes Xanthomonas campestris pv. campestris str. 8004   4 4
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   4 4
No Yes Proteus mirabilis BB2000   1 1
No Yes Rahnella aquatilis HX2   2 2
No Yes Serratia sp. AS13   2 2
No Yes Serratia plymuthica S13   2 2
No Yes Serratia plymuthica 4Rx13   2 2
No Yes Serratia marcescens FGI94   3 3
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   2 2
No Yes Pantoea ananatis PA13   2 2
No Yes Pantoea ananatis AJ13355   2 2
No Yes Erwinia pyrifoliae DSM 12163   2 2
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Cronobacter sakazakii CMCC 45402   2 2
No Yes Cronobacter sakazakii SP291   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   2 2
No Yes Raoultella ornithinolytica B6   3 3
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Klebsiella oxytoca KCTC 1686   3 3
No Yes Klebsiella pneumoniae JM45   2 2
No Yes Klebsiella pneumoniae CG43   2 2
No Yes Klebsiella pneumoniae KCTC 2242   2 2
No Yes Klebsiella pneumoniae 342   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   2 2
No Yes Enterobacter aerogenes EA1509E   3 3
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   2 2
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   2 2
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   2 2
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   2 2
No Yes Pseudomonas stutzeri CCUG 29243   4 4
No Yes Pseudomonas stutzeri DSM 10701   3 3
No Yes Pseudomonas stutzeri DSM 4166   5 5
No Yes Pseudomonas stutzeri RCH2   4 4
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   5 5
No Yes Pseudomonas monteilii SB3101   4 4
No Yes Pseudomonas monteilii SB3078   5 5
No Yes Pseudomonas putida H8234   4 4
No Yes Pseudomonas putida HB3267   5 5
No Yes Pseudomonas putida NBRC 14164   6 6
No Yes Pseudomonas putida DOT-T1E   4 4
No Yes Pseudomonas putida S16   4 4
No Yes Pseudomonas putida BIRD-1   4 4
No Yes Pseudomonas putida W619   4 4
No Yes Pseudomonas putida ND6   4 4
No Yes Pseudomonas putida KT2440   4 4
No Yes Pseudomonas putida GB-1   4 4
No Yes Pseudomonas protegens CHA0   4 4
No Yes Pseudomonas poae RE*1-1-14   2 2
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   3 3
No Yes Pseudomonas fluorescens R124   2 2
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas resinovorans NBRC 106553   3 3
No Yes Pseudomonas mendocina NK-01   4 4
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   2 2
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   3 3
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Acinetobacter genomosp. 13TU RUH2624   2 2
No Yes Acinetobacter sp. SH024   2 2
No Yes Acinetobacter calcoaceticus ruh2202   2 2
No Yes Acinetobacter baumannii ZW85-1   2 2
No Yes Acinetobacter baumannii TYTH-1   3 3
No Yes Acinetobacter baumannii BJAB0868   3 3
No Yes Acinetobacter baumannii BJAB0715   2 2
No Yes Acinetobacter baumannii BJAB07104   3 3
No Yes Acinetobacter baumannii TCDC-AB0715   3 3
No Yes Acinetobacter baumannii D1279779   2 2
No Yes Acinetobacter baumannii MDR-TJ   3 3
No Yes Acinetobacter baumannii 1656-2   3 3
No Yes Acinetobacter baumannii ATCC 19606   2 2
No Yes Acinetobacter baumannii AB307-0294   2 2
No Yes Acinetobacter baumannii AYE   2 2
No Yes Acinetobacter baumannii SDF   2 2
No Yes Acinetobacter baumannii MDR-ZJ06   3 3
No Yes Acinetobacter baumannii AB0057   2 2
No Yes Acinetobacter baumannii ACICU   3 3
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   2 2
No Yes Acinetobacter lwoffii SH145   1 1
No Yes Methylophaga sp. JAM7   4 4
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes Natrinema pellirubrum DSM 15624   2 2
No Yes Natronococcus occultus SP4   1 1
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 2
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   2 2
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   3 3
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   12 12
No Yes Combined (meta-genome)   20 20
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   29 29
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   5 5
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   5 5
No Yes Dump bottom (Dump bottom) (meta-genome)   60 60
No Yes Dump top (Dump top) (meta-genome)   61 61
No Yes Endophytic microbiome from Rice (meta-genome)   11 11
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   13 13
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   24 24
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   25 25
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   25 25
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   22 22
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   71 71
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   16 16
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   13 13
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   16 16
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   27 27
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   27 27
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   11 11
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   5 5
No Yes NCBI 2017_08 genome   54358 54356
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   52 52
No Yes Protozoadb 2010_08 (Protozoadb)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   20 20
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   17 17
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   17 17
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 3
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   57 57
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   47 47
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   39 39
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   15 15
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   12 12
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   123 123
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   111 111
No Yes STRING v9.0.5 (STRING)   474 474
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   62 62
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   12 12
No Yes Uniprot 2018_03 genome   15041 15040
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   5 5
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   683 683
No Yes NCBI plasmid sequences (Plasmids)   63 63
No Yes PDB chains (SCOP 1.75) (PDB)   9 9
No Yes Protein Data Bank (all PDB sequenc)   38 38
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   133 133
No Yes TargetDB (Targets)   12 12
No Yes The Salmonella enterica Pan-genome (meta-genome)   30 30

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]