Select to display | Genome | | Domains | Proteins |
No Yes | ALL | | 47837 | 47837 |
No Yes | Saccoglossus kowalevskii v3.0 | | 2 | 1 |
No Yes | Lepisosteus oculatus 76 | Spotted gar | 2 | 2 |
No Yes | Gadus morhua 76_1 | Atlantic cod | 2 | 2 |
No Yes | Tetraodon nigroviridis 76_8 | Spotted green pufferfish | 1 | 1 |
No Yes | Takifugu rubripes 76_4 | Torafugu | 2 | 2 |
No Yes | Gasterosteus aculeatus 76_1 | Three-spined stickleback | 3 | 3 |
No Yes | Xiphophorus maculatus 76_4.4.2 | Southern platyfish | 2 | 2 |
No Yes | Poecilia formosa 76 | Amazon molly | 3 | 3 |
No Yes | Oreochromis niloticus 76_1.0 | Nile tilapia | 1 | 1 |
No Yes | Astyanax mexicanus 76 | Mexican tetra | 2 | 2 |
No Yes | Adineta vaga | | 2 | 2 |
No Yes | Culex pipiens quinquefasciatus | Southern house mosquito | 12 | 12 |
No Yes | Daphnia pulex | Common water flea | 2 | 2 |
No Yes | Mnemiopsis leidyi | Sea walnut | 10 | 8 |
No Yes | Hydra vulgaris | | 4 | 3 |
No Yes | Sphaeroforma arctica JP610 | | 8 | 7 |
No Yes | Capsaspora owczarzaki ATCC 30864 | | 1 | 1 |
No Yes | Conidiobolus coronatus NRRL28638 v1.0 | | 5 | 3 |
No Yes | Mortierella verticillata NRRL 6337 | | 2 | 2 |
No Yes | Mixia osmundae IAM 14324 v1.0 | | 1 | 1 |
No Yes | Puccinia graminis f. sp. tritici CRL 75-36-700-3 | | 1 | 1 |
No Yes | Melampsora laricis-populina | | 2 | 2 |
No Yes | Rhodotorula graminis WP1 v1.0 | | 1 | 1 |
No Yes | Sphaerobolus stellatus v1.0 | | 1 | 1 |
No Yes | Schizophyllum commune | | 1 | 1 |
No Yes | Stereum hirsutum FP-91666 SS1 v1.0 | | 1 | 1 |
No Yes | Neurospora tetrasperma | | 1 | 1 |
No Yes | Neurospora crassa OR74A | | 1 | 1 |
No Yes | Fusarium graminearum | | 3 | 3 |
No Yes | Nectria haematococca mpVI | | 7 | 2 |
No Yes | Fusarium oxysporum f. sp. lycopersici 4286 | | 3 | 3 |
No Yes | Fusarium verticillioides 7600 | | 2 | 2 |
No Yes | Trichoderma asperellum CBS 433.97 v1.0 | | 3 | 2 |
No Yes | Trichoderma atroviride | | 2 | 2 |
No Yes | Trichoderma citrinoviride v1.0 | | 2 | 1 |
No Yes | Trichoderma reesei 1.2 | | 2 | 1 |
No Yes | Trichoderma virens Gv29-8 | | 1 | 1 |
No Yes | Trichoderma longibrachiatum ATCC 18648 v1.0 | | 2 | 1 |
No Yes | Trichoderma harzianum CBS 226.95 v1.0 | | 2 | 1 |
No Yes | Coccidioides posadasii RMSCC 3488 | | 1 | 1 |
No Yes | Coccidioides immitis RS | | 1 | 1 |
No Yes | Aspergillus zonatus v1.0 | | 2 | 2 |
No Yes | Aspergillus glaucus | | 1 | 1 |
No Yes | Aspergillus tubingensis v1.0 | | 1 | 1 |
No Yes | Aspergillus wentii v1.0 | | 1 | 1 |
No Yes | Aspergillus oryzae RIB40 | | 3 | 3 |
No Yes | Aspergillus flavus NRRL3357 | | 2 | 2 |
No Yes | Allomyces macrogynus ATCC 38327 | | 5 | 5 |
No Yes | Dictyostelium discoideum | | 5 | 5 |
No Yes | Dictyostelium purpureum | | 10 | 4 |
No Yes | Selaginella moellendorffii | | 230 | 225 |
No Yes | Pinus taeda | Loblolly pine | 62 | 51 |
No Yes | Picea abies | Norway spruce | 69 | 56 |
No Yes | Eucalyptus grandis v201 | Rose gum | 370 | 345 |
No Yes | Theobroma cacao B97-61/B2 v1 | Cacao | 142 | 127 |
No Yes | Gossypium raimondii v221 | | 155 | 141 |
No Yes | Citrus clementina v165 | | 155 | 147 |
No Yes | Citrus sinensis v154 | Sweet orange | 173 | 160 |
No Yes | Thellungiella halophila v173 | | 51 | 48 |
No Yes | Brassica rapa Chiifu-401 1.2 | Field mustard | 82 | 73 |
No Yes | Capsella rubella v183 | | 46 | 44 |
No Yes | Arabidopsis lyrata | Lyrate rockcress | 66 | 64 |
No Yes | Arabidopsis thaliana 10 | Thale cress | 55 | 52 |
No Yes | Carica papaya | Papaya | 44 | 40 |
No Yes | Medicago truncatula | Barrel medic | 236 | 231 |
No Yes | Phaseolus vulgaris v186 | French bean | 110 | 107 |
No Yes | Glycine max v109 | Soybean | 164 | 155 |
No Yes | Cucumis sativus v122 | Cucumber | 56 | 54 |
No Yes | Fragaria vesca | Wild strawberry | 130 | 112 |
No Yes | Malus domestica v196 | Apple | 326 | 293 |
No Yes | Prunus persica v139 | Peach | 109 | 103 |
No Yes | Linum usitatissimum v200 | Flax | 125 | 115 |
No Yes | Manihot esculenta v147 | Cassava | 130 | 118 |
No Yes | Populus trichocarpa v156 | Black cottonwood | 290 | 261 |
No Yes | Vitis vinifera | Wine grape | 83 | 70 |
No Yes | Mimulus guttatus v140 | Spotted monkey flower | 62 | 55 |
No Yes | Solanum lycopersicum v.2.3 | Tomato | 102 | 94 |
No Yes | Solanum tuberosum | Potato | 149 | 135 |
No Yes | Actinidia chinensis Hongyang | | 84 | 70 |
No Yes | Aquilegia coerulea v195 | | 101 | 98 |
No Yes | Triticum urartu 22 | | 141 | 133 |
No Yes | Triticum aestivum 22 | Bread wheat | 265 | 263 |
No Yes | Aegilops tauschii 22 | | 157 | 153 |
No Yes | Brachypodium distachyon | Stiff brome | 93 | 93 |
No Yes | Oryza barthii 22 | African wild rice | 183 | 132 |
No Yes | Oryza meridionalis 22 | | 141 | 126 |
No Yes | Oryza glumaepatula 22 | | 178 | 145 |
No Yes | Oryza glaberrima | African rice | 109 | 106 |
No Yes | Oryza punctata 22 | | 153 | 122 |
No Yes | Oryza nivara 22 | | 188 | 150 |
No Yes | Oryza brachyantha 22 | Malo sina | 91 | 87 |
No Yes | Oryza sativa ssp. japonica 5.0 | Japanese rice | 155 | 147 |
No Yes | Oryza sativa v193 | Rice | 154 | 146 |
No Yes | Phyllostachys heterocyclavar. pubescens | Kikko-chiku | 87 | 83 |
No Yes | Panicum virgatum v202 | Switchgrass | 133 | 128 |
No Yes | Setaria italica v164 | Foxtail millet | 90 | 85 |
No Yes | Zea mays subsp. mays | Maize | 75 | 74 |
No Yes | Zea mays v181 | Maize | 81 | 80 |
No Yes | Sorghum bicolor | Sorghum | 101 | 97 |
No Yes | Musa balbisiana | Balbis banana | 89 | 74 |
No Yes | Musa acuminata 22 | Wild Malaysian banana | 69 | 62 |
No Yes | Amborella trichopoda 22 | | 71 | 55 |
No Yes | Physcomitrella patens | | 11 | 9 |
No Yes | Coccomyxa subellipsoidea sp. C-169 v2 | | 2 | 2 |
No Yes | Chlorella vulgaris | | 2 | 2 |
No Yes | Volvox carteri f. nagariensis | | 1 | 1 |
No Yes | Chlamydomonas reinhardtii 4.0 | | 1 | 1 |
No Yes | Micromonas pusilla CCMP1545 v3.0 | | 2 | 1 |
No Yes | Bigelowiella natans CCMP2755 22 | | 2 | 2 |
No Yes | Ectocarpus siliculosus | | 3 | 3 |
No Yes | Fragilariopsis cylindrus | | 10 | 8 |
No Yes | Paramecium tetraurelia | | 2 | 2 |
No Yes | Tetrahymena thermophila SB210 1 | | 10 | 4 |
No Yes | Symbiodinium minutum clade B1 v1.2 | | 5 | 2 |
No Yes | Naegleria gruberi | | 11 | 9 |
No Yes | Guillardia theta CCMP2712 v1.0 | | 1 | 1 |
No Yes | Emiliania huxleyi CCMP1516 | | 5 | 4 |
No Yes | Leptolyngbya sp. PCC 7376 | | 1 | 1 |
No Yes | Synechococcus sp. PCC 6312 | | 1 | 1 |
No Yes | Acidimicrobium ferrooxidans DSM 10331 | | 1 | 1 |
No Yes | Catenulispora acidiphila DSM 44928 | | 4 | 4 |
No Yes | Kitasatospora setae KM-6054 | | 1 | 1 |
No Yes | Streptomyces coelicolor A3(2) | | 1 | 1 |
No Yes | Streptomyces sp. PAMC26508 | | 3 | 3 |
No Yes | Streptomyces flavogriseus ATCC 33331 | | 3 | 3 |
No Yes | Streptomyces griseus subsp. griseus NBRC 13350 | | 1 | 1 |
No Yes | Streptomyces cattleya NRRL 8057 = DSM 46488 | | 2 | 2 |
No Yes | Streptomyces hygroscopicus subsp. jinggangensis 5008 | | 2 | 2 |
No Yes | Actinoplanes sp. N902-109 | | 5 | 5 |
No Yes | Actinoplanes missouriensis 431 | | 1 | 1 |
No Yes | Segniliparus rotundus DSM 44985 | | 1 | 1 |
No Yes | Tsukamurella paurometabola DSM 20162 | | 1 | 1 |
No Yes | Rhodococcus erythropolis PR4 | | 1 | 1 |
No Yes | Nocardia farcinica IFM 10152 | | 1 | 1 |
No Yes | Mycobacterium abscessus ATCC 19977 | | 1 | 1 |
No Yes | Mycobacterium ulcerans Agy99 | | 1 | 1 |
No Yes | Mycobacterium marinum M | | 1 | 1 |
No Yes | Mycobacterium smegmatis str. MC2 155 | | 1 | 1 |
No Yes | Cellulomonas flavigena DSM 20109 | | 5 | 2 |
No Yes | Cellulomonas fimi ATCC 484 | | 5 | 2 |
No Yes | [Cellvibrio] gilvus ATCC 13127 | | 4 | 1 |
No Yes | Arthrobacter aurescens TC1 | | 1 | 1 |
No Yes | Arthrobacter sp. Rue61a | | 1 | 1 |
No Yes | Arthrobacter sp. FB24 | | 2 | 1 |
No Yes | Ruminococcus albus 7 | | 2 | 2 |
No Yes | Brevibacillus brevis NBRC 100599 | | 1 | 1 |
No Yes | Paenibacillus mucilaginosus 3016 | | 6 | 5 |
No Yes | Chlorobium luteolum DSM 273 | | 1 | 1 |
No Yes | Haliscomenobacter hydrossis DSM 1100 | | 2 | 2 |
No Yes | Spirochaeta smaragdinae DSM 11293 | | 2 | 2 |
No Yes | Candidatus Solibacter usitatus Ellin6076 | | 1 | 1 |
No Yes | Granulicella mallensis MP5ACTX8 | | 1 | 1 |
No Yes | Terriglobus saanensis SP1PR4 | | 1 | 1 |
No Yes | Terriglobus roseus DSM 18391 | | 2 | 1 |
No Yes | Candidatus Saccharibacteria bacterium RAAC3_TM7_1 | | 1 | 1 |
No Yes | Geobacter daltonii FRC-32 | | 1 | 1 |
No Yes | Geobacter uraniireducens Rf4 | | 1 | 1 |
No Yes | Geobacter sulfurreducens KN400 | | 1 | 1 |
No Yes | Geobacter metallireducens GS-15 | | 1 | 1 |
No Yes | Pelobacter propionicus DSM 2379 | | 1 | 1 |
No Yes | Sorangium cellulosum 'So ce 56' | | 2 | 2 |
No Yes | Stigmatella aurantiaca DW4/3-1 | | 1 | 1 |
No Yes | Corallococcus coralloides DSM 2259 | | 2 | 2 |
No Yes | Chromobacterium violaceum ATCC 12472 | | 1 | 1 |
No Yes | Cupriavidus metallidurans CH34 | | 2 | 1 |
No Yes | Burkholderia thailandensis E264 | | 2 | 1 |
No Yes | Burkholderia pseudomallei 1106a | | 2 | 1 |
No Yes | Burkholderia ambifaria AMMD | | 2 | 1 |
No Yes | Burkholderia cenocepacia HI2424 | | 5 | 2 |
No Yes | Asticcacaulis excentricus CB 48 | | 1 | 1 |
No Yes | Tistrella mobilis KA081020-065 | | 1 | 1 |
No Yes | Agrobacterium vitis S4 | | 1 | 1 |
No Yes | Xanthomonas axonopodis pv. citri str. 306 | | 2 | 1 |
No Yes | Pseudomonas sp. UW4 | | 1 | 1 |
No Yes | Pseudomonas brassicacearum subsp. brassicacearum NFM421 | | 1 | 1 |
No Yes | Pseudomonas protegens Pf-5 | | 4 | 2 |
No Yes | Francisella philomiragia subsp. philomiragia ATCC 25017 | | 1 | 1 |
No Yes | Coccidioides posadasii str. Silveira | | 1 | 1 |
No Yes | Coccidioides immitis RMSCC 3703 | | 1 | 1 |
No Yes | Coccidioides immitis RMSCC 2394 | | 1 | 1 |
No Yes | Coccidioides immitis H538.4 | | 1 | 1 |
No Yes | Theobroma cacao Matina 1-6 v0.9 | Cacao | 139 | 105 |
No Yes | Hordeum vulgare 22 | Domesticated barley | 252 | 239 |
No Yes | Oryza sativa ssp. Indica (Subspecies) | Long-grained rice | 167 | 156 |
No Yes | Crinalium epipsammum PCC 9333 | | 1 | 1 |
No Yes | Anabaena cylindrica PCC 7122 | | 1 | 1 |
No Yes | Streptomyces rapamycinicus NRRL 5491 | | 1 | 1 |
No Yes | Streptomyces fulvissimus DSM 40593 | | 1 | 1 |
No Yes | Streptomyces venezuelae ATCC 10712 | | 1 | 1 |
No Yes | Streptomyces cattleya NRRL 8057 = DSM 46488 | | 2 | 2 |
No Yes | Streptomyces hygroscopicus subsp. jinggangensis TL01 | | 2 | 2 |
No Yes | Saccharothrix espanaensis DSM 44229 | | 2 | 2 |
No Yes | Actinoplanes friuliensis DSM 7358 | | 4 | 3 |
No Yes | Rhodococcus erythropolis CCM2595 | | 1 | 1 |
No Yes | Nocardia brasiliensis ATCC 700358 | | 1 | 1 |
No Yes | Mycobacterium sp. JDM601 | | 1 | 1 |
No Yes | Mycobacterium abscessus subsp. bolletii 50594 | | 1 | 1 |
No Yes | Mycobacterium liflandii 128FXT | | 1 | 1 |
No Yes | Mycobacterium smegmatis str. MC2 155 | | 1 | 1 |
No Yes | Mycobacterium kansasii ATCC 12478 | | 1 | 1 |
No Yes | Ruminococcus champanellensis 18P13 | | 3 | 1 |
No Yes | Paenibacillus mucilaginosus KNP414 | | 2 | 2 |
No Yes | Paenibacillus mucilaginosus K02 | | 2 | 2 |
No Yes | Paenibacillus larvae subsp. larvae DSM 25430 | | 1 | 1 |
No Yes | Singulisphaera acidiphila DSM 18658 | | 2 | 1 |
No Yes | Geobacter sulfurreducens PCA | | 1 | 1 |
No Yes | Sorangium cellulosum So0157-2 | | 1 | 1 |
No Yes | Burkholderia sp. YI23 | | 1 | 1 |
No Yes | Burkholderia sp. KJ006 | | 2 | 1 |
No Yes | Burkholderia thailandensis MSMB121 | | 2 | 1 |
No Yes | Burkholderia pseudomallei MSHR305 | | 2 | 1 |
No Yes | Burkholderia pseudomallei NCTC 13179 | | 2 | 1 |
No Yes | Burkholderia pseudomallei BPC006 | | 2 | 1 |
No Yes | Burkholderia pseudomallei 1026b | | 2 | 1 |
No Yes | Burkholderia pseudomallei 668 | | 2 | 1 |
No Yes | Burkholderia pseudomallei 1710b | | 2 | 1 |
No Yes | Burkholderia pseudomallei K96243 | | 2 | 1 |
No Yes | Burkholderia ambifaria MC40-6 | | 2 | 1 |
No Yes | Burkholderia cenocepacia MC0-3 | | 5 | 2 |
No Yes | Burkholderia cenocepacia AU 1054 | | 5 | 2 |
No Yes | Burkholderia cepacia GG4 | | 2 | 1 |
No Yes | Leisingera methylohalidivorans DSM 14336 | | 1 | 1 |
No Yes | Xanthomonas citri subsp. citri Aw12879 | | 2 | 1 |
No Yes | Xanthomonas axonopodis Xac29-1 | | 2 | 1 |
No Yes | Pseudomonas putida W619 | | 1 | 1 |
No Yes | Pseudomonas protegens CHA0 | | 2 | 1 |
No Yes | Pseudomonas fluorescens F113 | | 1 | 1 |
No Yes | Pseudomonas fluorescens A506 | | 1 | 1 |
No Yes | Lotus japonicus (Early assembly) | | 58 | 56 |
No Yes | Malus x domestica (Duplicate) | Apple | 326 | 293 |
No Yes | Ricinus communis (Early assembly) | Castor bean | 95 | 81 |
No Yes | Nicotiana benthamiana 0.4.4 (Early draft) | | 117 | 100 |
No Yes | Solanum pimpinellifolium A-1.0 (Early draft) | Currant tomato | 101 | 93 |
No Yes | Solanum lycopersicum v2.3 (Early assembly) | Tomato | 102 | 94 |
No Yes | Phoenix dactylifera (Early draft) | Date palm | 21 | 20 |
No Yes | Gadus morhua 69_1 | Atlantic cod | 2 | 2 |
No Yes | Tetraodon nigroviridis 69_8 | Spotted green pufferfish | 1 | 1 |
No Yes | Takifugu rubripes 69_4 | Torafugu | 2 | 2 |
No Yes | Gasterosteus aculeatus 69_1 | Three-spined stickleback | 3 | 3 |
No Yes | Xiphophorus maculatus 69_4.4.2 | Southern platyfish | 2 | 2 |
No Yes | Oreochromis niloticus 69_1.0 | Nile tilapia | 1 | 1 |
No Yes | Arabidopsis thaliana 10 | Thale cress | 50 | 47 |
No Yes | Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) | | 1 | 1 |
No Yes | Combined (meta-genome) | | 3 | 3 |
No Yes | Cyphomyrmex longiscapus fungus garden (meta-genome) | | 1 | 1 |
No Yes | Dump bottom (Dump bottom) (meta-genome) | | 6 | 6 |
No Yes | Endophytic microbiome from Rice (meta-genome) | | 2 | 2 |
No Yes | Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) | | 1 | 1 |
No Yes | Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) | | 1 | 1 |
No Yes | Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) | | 1 | 1 |
No Yes | Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) | | 1 | 1 |
No Yes | Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) | | 3 | 3 |
No Yes | Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) | | 2 | 2 |
No Yes | Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) | | 1 | 1 |
No Yes | Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) | | 1 | 1 |
No Yes | NCBI 2017_08 genome | | 16960 | 14433 |
No Yes | Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) | | 4 | 4 |
No Yes | Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) | | 1 | 1 |
No Yes | simHC - Simulated High Complexity Metagenome (meta-genome) | | 5 | 3 |
No Yes | simLC - Simulated Low Complexity Metagenome (meta-genome) | | 2 | 1 |
No Yes | Soil microbial communities from Minnesota Farm (meta-genome) | | 2 | 2 |
No Yes | Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) | | 1 | 1 |
No Yes | Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) | | 7 | 5 |
No Yes | Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) | | 5 | 4 |
No Yes | Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) | | 6 | 6 |
No Yes | Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) | | 8 | 7 |
No Yes | Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) | | 4 | 3 |
No Yes | STRING v9.0.5 (STRING) | | 1137 | 1051 |
No Yes | Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) | | 3 | 2 |
No Yes | Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) | | 1 | 1 |
No Yes | Uniprot 2018_03 genome | | 16394 | 14728 |
No Yes | Global Ocean Sampling Expedition (GOS) | | 50 | 44 |
No Yes | NCBI plasmid sequences (Plasmids) | | 9 | 7 |
No Yes | NCBI viral sequences (Viral) | | 5 | 5 |
No Yes | PDB chains (SCOP 1.75) (PDB) | | 13 | 12 |
No Yes | Protein Data Bank (all PDB sequenc) | | 142 | 120 |
No Yes | SCOP2 SCOPe CATH ECOD (all domain sequ) | | 308 | 302 |
No Yes | TargetDB (Targets) | | 2 | 1 |
No Yes | UniProt viral sequences (Viral) | | 1 | 1 |