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Serralysin-like metalloprotease, C-terminal domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 13 significant domains in 13 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1af0A   2.93e-50   0.00000371   248-469   1sat A:247-471  
1go7P   4.61e-53   0.00000286   242-460   1k7i A:259-479  
1go8P   4.61e-53   0.00000286   242-460   1k7i A:259-479  
1jiwP   6.08e-48   0.0000093   247-469   1kap P:247-470  
1k7gA   5.05e-53   0.00000286   259-477   1k7i A:259-479  
1k7iA   5.05e-53   0.00000286   259-477   1k7i A:259-479  
1k7qA   5.05e-53   0.00000286   259-477   1k7i A:259-479  
1kapP   6.37e-48   0.0000093   256-478   1kap P:247-470  
1satA   2.26e-50   0.00000355   248-469   1sat A:247-471  
1smpA   3.97e-50   0.00000429   248-469   1sat A:247-471  
1srpA   1.46e-50   0.00000506   248-469   1sat A:247-471  
 
Weak hits:
1g9kA   2.34e-51   0.0012   247-457   1g9k A:245-463  
1h71P   2.34e-51   0.0012   247-457   1g9k A:245-463  

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Select to display   Genome       Domains   Proteins
No Yes ALL   10029 10029
No Yes Nostoc sp. PCC 7120   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Maricaulis maris MCS10   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Proteus mirabilis HI4320   5 5
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Serratia sp. AS12   2 2
No Yes Serratia plymuthica AS9   2 2
No Yes Serratia proteamaculans 568   2 2
No Yes Dickeya zeae Ech1591   3 3
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas protegens Pf-5   2 2
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Synechococcus sp. CC9902   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Nitrosomonas sp. AL212   2 2
No Yes Caulobacter crescentus CB15   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   2 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Liberibacter crescens BT-1   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Proteus mirabilis BB2000   4 4
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia sp. AS13   2 2
No Yes Serratia plymuthica S13   2 2
No Yes Serratia plymuthica 4Rx13   2 2
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   5 5
No Yes Serratia liquefaciens ATCC 27592   4 4
No Yes Dickeya dadantii Ech586   4 4
No Yes Dickeya dadantii 3937   4 4
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas protegens CHA0   2 2
No Yes Pseudomonas poae RE*1-1-14   3 3
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   6 5
No Yes Pseudomonas fluorescens R124   2 2
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Combined (meta-genome)   7 7
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   7 7
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   5 5
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   7 6
No Yes NCBI 2017_08 genome   7575 7505
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   66 66
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   1936 1893
No Yes Global Ocean Sampling Expedition (GOS)   10 10
No Yes NCBI plasmid sequences (Plasmids)   14 13
No Yes PDB chains (SCOP 1.75) (PDB)   13 13
No Yes Protein Data Bank (all PDB sequenc)   20 20
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   83 83

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