SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


PA domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1cx8A   2.12e-55   0.00000000444   70-261   1de4 C:190-382  
1de4C   2.12e-55   0.00000000444   71-262   1de4 C:190-382  
1z8lA   4.1e-79   0.000000000902   60-304   2or4 A:118-350  
2c6cA   4.32e-79   0.000000000902   72-316   2or4 A:118-350  
3bi1A   4.32e-79   0.000000000902   74-318   2or4 A:118-350  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a PA domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   9380 9380
No Yes Homo sapiens 76_38 Human 20 20
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 7 7
No Yes Pongo abelii 76_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 15 15
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 10 10
No Yes Otolemur garnettii 76_3 Small-eared galago 5 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 6 5
No Yes Rattus norvegicus 76_5.0 Norway rat 5 5
No Yes Mus musculus 76_38 House mouse 9 9
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 5 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 4 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 5 5
No Yes Ochotona princeps 76 American pika 3 3
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 6 6
No Yes Bos taurus 76_3.1 Cattle 5 5
No Yes Ovis aries 76_3.1 Sheep 5 5
No Yes Vicugna pacos 76_1 Alpaca 3 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 4 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 5 5
No Yes Canis familiaris 76_3.1 Dog 4 4
No Yes Felis catus 76_6.2 Domestic cat 5 5
No Yes Equus caballus 76_2 Horse 5 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 5 5
No Yes Pteropus vampyrus 76_1 Large flying fox 5 5
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 76_3 African savanna elephant 6 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 5 5
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 7 7
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Meleagris gallopavo 76_2 Turkey 4 4
No Yes Gallus gallus 76_4 Chicken 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 3 3
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 3 3
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 3 3
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 76_2.0 Green anole 4 4
No Yes Xenopus laevis African clawed frog 5 5
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 76_1 Coelacanth 5 5
No Yes Lepisosteus oculatus 76 Spotted gar 5 5
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 5 5
No Yes Takifugu rubripes 76_4 Torafugu 18 18
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 76_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 4 4
No Yes Poecilia formosa 76 Amazon molly 4 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 4 4
No Yes Astyanax mexicanus 76 Mexican tetra 4 4
No Yes Danio rerio 76_9 Zebrafish 8 8
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 14 14
No Yes Ciona intestinalis 76 Vase tunicate 5 5
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 12 9
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 6 6
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   2 2
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   3 3
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 4
No Yes Pristionchus pacificus   3 3
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   2 2
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   3 3
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 4 4
No Yes Caenorhabditis briggsae 2   3 3
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 16 16
No Yes Hydra vulgaris   4 4
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   2 2
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Phycomyces blakesleeanus   1 1
No Yes Rhizopus oryzae RA 99-880   4 4
No Yes Mucor circinelloides   7 7
No Yes Rhizomucor miehei CAU432   3 3
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   3 3
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 2
No Yes Pisolithus microcarpus 441 v1.0   3 3
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 2 2
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   2 2
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 2
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   2 2
No Yes Punctularia strigosozonata v1.0   2 2
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   2 2
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   3 3
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 2
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   2 2
No Yes Dichomitus squalens   3 3
No Yes Trametes versicolor v1.0   3 3
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   3 3
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Magnaporthe poae ATCC 64411 22   3 3
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   3 3
No Yes Sporotrichum thermophile ATCC 42464   2 2
No Yes Thielavia terrestris NRRL 8126   2 2
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   3 3
No Yes Acremonium alcalophilumv 1.0   3 3
No Yes Glomerella graminicola 22   4 4
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   3 3
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   3 3
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   2 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 2
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   2 2
No Yes Didymella exigua CBS 183.55 v1.0   3 3
No Yes Leptosphaeria maculans 22   3 3
No Yes Setosphaeria turcica v1.0   3 3
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   5 5
No Yes Cochliobolus victoriae FI3 v1.0   4 4
No Yes Cochliobolus carbonum 26-R-13 v1.0   4 4
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 5 5
No Yes Alternaria brassicicola   5 5
No Yes Cochliobolus lunatus m118 v2.0   3 3
No Yes Pyrenophora teres f. teres 22   4 4
No Yes Pyrenophora tritici-repentis   5 5
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   3 3
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 2
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   3 3
No Yes Coccidioides immitis RS   3 3
No Yes Ajellomyces dermatitidis SLH14081   3 3
No Yes Histoplasma capsulatum class NAmI strain WU24   3 3
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   3 3
No Yes Trichophyton verrucosum HKI 0517   2 2
No Yes Arthroderma benhamiae CBS 112371   3 3
No Yes Trichophyton tonsurans CBS 112818   3 3
No Yes Trichophyton rubrum CBS 118892   3 3
No Yes Uncinocarpus reesii 1704   2 2
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   2 2
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 2
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   2 2
No Yes Pichia pastoris GS115   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Candida lusitaniae ATCC 42720   2 2
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Kluyveromyces thermotolerans CBS 6340   2 2
No Yes Lachancea kluyveri   1 1
No Yes Kluyveromyces waltii   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Selaginella moellendorffii   12 12
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   6 6
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Medicago truncatula Barrel medic 5 5
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 5 5
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 3 3
No Yes Malus domestica v196 Apple 8 8
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Actinidia chinensis Hongyang   3 3
No Yes Aquilegia coerulea v195   6 6
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 4 4
No Yes Oryza barthii 22 African wild rice 8 7
No Yes Oryza meridionalis 22   7 5
No Yes Oryza glumaepatula 22   4 4
No Yes Oryza glaberrima African rice 4 4
No Yes Oryza punctata 22   5 5
No Yes Oryza nivara 22   10 10
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 4 4
No Yes Oryza sativa v193 Rice 4 4
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 6 6
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 7 7
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   7 6
No Yes Pythium aphanidermatum DAOM BR444 22   5 5
No Yes Pythium irregulare DAOM BR486 22   5 4
No Yes Pythium vexans DAOM BR484 22   7 6
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 10 8
No Yes Phytophthora sojae 1.1   5 5
No Yes Phytophthora infestans T30-4   3 3
No Yes Phytophthora capsici   3 3
No Yes Fragilariopsis cylindrus   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Robiginitalea biformata HTCC2501   2 2
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   3 3
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 5 5
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 4
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   3 3
No Yes Coccidioides posadasii str. Silveira   3 3
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   3 3
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   3 3
No Yes Histoplasma capsulatum H143   3 3
No Yes Histoplasma capsulatum H88   3 3
No Yes Histoplasma capsulatum G186AR   3 3
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 4 4
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 4
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 21 21
No Yes Homo sapiens (NCBI version) Human 10 10
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 5 5
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Lotus japonicus (Early assembly)   4 4
No Yes Malus x domestica (Duplicate) Apple 8 8
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Homo sapiens 69_37 Human 5 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 5 5
No Yes Pongo abelii 69_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 4 4
No Yes Macaca mulatta 69_1 Rhesus monkey 5 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 4 4
No Yes Otolemur garnettii 69_3 Small-eared galago 5 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 6 5
No Yes Rattus norvegicus 69_3.4 Norway rat 6 6
No Yes Mus musculus 69_38 House mouse 5 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 5 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 4 4
No Yes Ochotona princeps 69 American pika 3 3
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 5 5
No Yes Bos taurus 69_3.1 Cattle 5 5
No Yes Vicugna pacos 69_1 Alpaca 3 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 4 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 5 5
No Yes Canis familiaris 69_3.1 Dog 4 4
No Yes Felis catus 69 Domestic cat 4 4
No Yes Equus caballus 69_2 Horse 5 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 5 5
No Yes Pteropus vampyrus 69_1 Large flying fox 5 5
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 69_3 African savanna elephant 5 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 4 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 6
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 3 3
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 69_2.0 Green anole 4 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 5 5
No Yes Takifugu rubripes 69_4 Torafugu 5 5
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 5 5
No Yes Oryzias latipes 69_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 4 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 4 4
No Yes Danio rerio 69_9 Zebrafish 6 6
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 7 7
No Yes Ciona intestinalis 69 Vase tunicate 5 5
No Yes Caenorhabditis elegans 69_215 Roundworm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes 4_050719Q (meta-genome)   1 1
No Yes 4_Deep_abyss (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3056 3054
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   293 289
No Yes Uniprot 2018_03 genome   3443 3434
No Yes Global Ocean Sampling Expedition (GOS)   36 36
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   104 104
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   209 209
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]