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Toll/Interleukin receptor TIR domain superfamily domain assignments
in
Sinorhizobium medicae WSM419

Assignment details

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Sinorhizobium medicae WSM419 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|150378393|ref|YP_001314987.1|   0.000000222   190-286   Toll/Interleukin receptor TIR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   107715 107715
No Yes Homo sapiens 76_38 Human 71 71
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 23 23
No Yes Gorilla gorilla 76_3.1 Western gorilla 33 33
No Yes Pongo abelii 76_2 Sumatran orangutan 22 22
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 27 27
No Yes Papio anubis 76 Olive baboon 24 24
No Yes Macaca mulatta 76_1 Rhesus monkey 42 42
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 42 42
No Yes Otolemur garnettii 76_3 Small-eared galago 24 24
No Yes Microcebus murinus 76_1 Gray mouse lemur 18 18
No Yes Rattus norvegicus 76_5.0 Norway rat 26 26
No Yes Mus musculus 76_38 House mouse 43 43
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 18 18
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 31 31
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 21 21
No Yes Cavia porcellus 76_3 Domestic guinea pig 28 28
No Yes Oryctolagus cuniculus 76_2 Rabbit 25 25
No Yes Ochotona princeps 76 American pika 17 17
No Yes Tupaia belangeri 76 Northern tree shrew 15 15
No Yes Sus scrofa 76_10.2 Pig 36 36
No Yes Bos taurus 76_3.1 Cattle 22 22
No Yes Ovis aries 76_3.1 Sheep 26 26
No Yes Vicugna pacos 76_1 Alpaca 18 18
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 19 19
No Yes Mustela putorius furo 76_1.0 Domestic ferret 22 22
No Yes Ailuropoda melanoleuca 76_1 Giant panda 29 29
No Yes Canis familiaris 76_3.1 Dog 31 31
No Yes Felis catus 76_6.2 Domestic cat 20 20
No Yes Equus caballus 76_2 Horse 25 25
No Yes Myotis lucifugus 76_2.0 Little brown bat 23 23
No Yes Pteropus vampyrus 76_1 Large flying fox 21 21
No Yes Sorex araneus 76_1 European shrew 17 17
No Yes Erinaceus europaeus 76 Western European hedgehog 20 20
No Yes Procavia capensis 76_1 Cape rock hyrax 17 16
No Yes Loxodonta africana 76_3 African savanna elephant 27 27
No Yes Echinops telfairi 76 Small Madagascar hedgehog 17 17
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 25 25
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 17 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 20 20
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 27 27
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 20 20
No Yes Ornithorhynchus anatinus 76_5 Platypus 21 21
No Yes Saccoglossus kowalevskii v3.0   100 80
No Yes Petromyzon marinus 76_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 76_2 Turkey 32 32
No Yes Gallus gallus 76_4 Chicken 28 28
No Yes Anas platyrhynchos 76_1.0 Mallard 25 25
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 29 29
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 25 25
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 26 26
No Yes Anolis carolinensis 76_2.0 Green anole 29 29
No Yes Xenopus laevis African clawed frog 25 25
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 27 27
No Yes Latimeria chalumnae 76_1 Coelacanth 31 31
No Yes Lepisosteus oculatus 76 Spotted gar 33 33
No Yes Gadus morhua 76_1 Atlantic cod 50 49
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 24 24
No Yes Takifugu rubripes 76_4 Torafugu 61 61
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 24 24
No Yes Oryzias latipes 76_1 Japanese medaka 21 21
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 25 25
No Yes Poecilia formosa 76 Amazon molly 30 30
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 31 31
No Yes Astyanax mexicanus 76 Mexican tetra 27 27
No Yes Danio rerio 76_9 Zebrafish 48 48
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 10 10
No Yes Ciona intestinalis 76 Vase tunicate 13 13
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 293 278
No Yes Adineta vaga   92 83
No Yes Octopus bimaculoides 280   38 33
No Yes Crassostrea gigas 22 Pacific oyster 125 111
No Yes Lottia gigantea Owl limpet 88 78
No Yes Helobdella robusta   16 15
No Yes Capitella sp. I   101 92
No Yes Danaus plexippus OGS1.0 Monarch butterfly 13 13
No Yes Heliconius melpomene Postman butterfly 10 10
No Yes Bombyx mori Domestic silkworm 12 12
No Yes Nasonia vitripennis Jewel wasp 8 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 17 17
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 7
No Yes Linepithema humile v1.1 Argentine ant 7 7
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 7 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 5 5
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 7 7
No Yes Atta cephalotes v1.1   6 6
No Yes Camponotus floridanus v3.3 Florida carpenter ant 8 8
No Yes Lucilia cuprina Australian sheep blowfly 11 9
No Yes Drosophila grimshawi 1.3   10 10
No Yes Drosophila willistoni 1.3   16 16
No Yes Drosophila pseudoobscura 2.13   16 16
No Yes Drosophila persimilis 1.3   17 17
No Yes Drosophila suzukii   11 11
No Yes Drosophila yakuba 1.3   14 14
No Yes Drosophila simulans 1.3   11 11
No Yes Drosophila sechellia 1.3   10 10
No Yes Drosophila melanogaster 76_5 Fruit fly 25 25
No Yes Drosophila erecta 1.3   10 10
No Yes Drosophila ananassae 1.3   12 12
No Yes Drosophila virilis 1.2   10 10
No Yes Drosophila mojavensis 1.3   9 9
No Yes Megaselia scalaris 22   14 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 16 16
No Yes Culex pipiens quinquefasciatus Southern house mosquito 14 14
No Yes Anopheles darlingi 22 American malaria mosquito 10 7
No Yes Anopheles gambiae 49_3j African malaria mosquito 16 16
No Yes Tribolium castaneum 3.0 Red flour beetle 12 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 8 8
No Yes Acyrthosiphon pisum Pea aphid 10 10
No Yes Rhodnius prolixus 22   7 7
No Yes Daphnia pulex Common water flea 10 10
No Yes Strigamia maritima 22   51 49
No Yes Sarcoptes scabiei   7 6
No Yes Tetranychus urticae Two-spotted spider mite 9 7
No Yes Ixodes scapularis (Preliminary) Black-legged tick 12 12
No Yes Pristionchus pacificus   4 4
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 6 6
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis brenneri   4 4
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 7 7
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   4 4
No Yes Echinococcus granulosus   4 4
No Yes Taenia solium Pork tapeworm 4 4
No Yes Schistosoma mansoni   8 8
No Yes Mnemiopsis leidyi Sea walnut 19 16
No Yes Acropora digitifera v1.0   46 44
No Yes Nematostella vectensis 1.0 Starlet sea anemone 23 18
No Yes Hydra vulgaris   7 7
No Yes Amphimedon queenslandica   8 7
No Yes Trichoplax adhaerens   20 15
No Yes Proterospongia sp. ATCC 50818   65 65
No Yes Monosiga brevicollis   9 9
No Yes Capsaspora owczarzaki ATCC 30864   6 4
No Yes Aspergillus niger 22   1 1
No Yes Dictyostelium discoideum   2 2
No Yes Dictyostelium purpureum   2 2
No Yes Selaginella moellendorffii   1 1
No Yes Pinus taeda Loblolly pine 498 449
No Yes Picea abies Norway spruce 107 103
No Yes Eucalyptus grandis v201 Rose gum 457 444
No Yes Theobroma cacao B97-61/B2 v1 Cacao 32 32
No Yes Gossypium raimondii v221   45 44
No Yes Citrus clementina v165   116 116
No Yes Citrus sinensis v154 Sweet orange 120 119
No Yes Thellungiella halophila v173   105 104
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 170 163
No Yes Capsella rubella v183   110 103
No Yes Arabidopsis lyrata Lyrate rockcress 174 166
No Yes Arabidopsis thaliana 10 Thale cress 182 173
No Yes Carica papaya Papaya 13 13
No Yes Medicago truncatula Barrel medic 561 506
No Yes Phaseolus vulgaris v186 French bean 150 142
No Yes Glycine max v109 Soybean 203 192
No Yes Cucumis sativus v122 Cucumber 26 26
No Yes Fragaria vesca Wild strawberry 190 177
No Yes Malus domestica v196 Apple 452 433
No Yes Prunus persica v139 Peach 173 173
No Yes Linum usitatissimum v200 Flax 159 158
No Yes Manihot esculenta v147 Cassava 46 46
No Yes Populus trichocarpa v156 Black cottonwood 188 182
No Yes Vitis vinifera Wine grape 34 34
No Yes Mimulus guttatus v140 Spotted monkey flower 5 5
No Yes Solanum lycopersicum v.2.3 Tomato 41 39
No Yes Solanum tuberosum Potato 104 104
No Yes Actinidia chinensis Hongyang   13 13
No Yes Aquilegia coerulea v195   4 4
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 6 6
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 4 4
No Yes Oryza barthii 22 African wild rice 3 3
No Yes Oryza meridionalis 22   4 4
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza glaberrima African rice 4 4
No Yes Oryza punctata 22   5 5
No Yes Oryza nivara 22   4 4
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 5 5
No Yes Oryza sativa v193 Rice 5 5
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 6 6
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 4 4
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 5 5
No Yes Musa acuminata 22 Wild Malaysian banana 4 4
No Yes Amborella trichopoda 22   30 29
No Yes Physcomitrella patens   15 15
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   7 7
No Yes Volvox carteri v199   4 4
No Yes Chlamydomonas reinhardtii 4.0   6 6
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus tauri   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   24 23
No Yes Bigelowiella natans CCMP2755 22   3 3
No Yes Cyanophora paradoxa   55 53
No Yes Aureococcus anophagefferens   3 3
No Yes Albugo laibachii 22   5 3
No Yes Pythium iwayamai DAOM BR242034 22   9 6
No Yes Pythium arrhenomanes ATCC 12531 22   8 6
No Yes Pythium ultimum v1.7-2   20 14
No Yes Pythium aphanidermatum DAOM BR444 22   15 9
No Yes Pythium irregulare DAOM BR486 22   11 7
No Yes Pythium vexans DAOM BR484 22   11 9
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 15 9
No Yes Phytophthora sojae 1.1   15 10
No Yes Phytophthora infestans T30-4   23 17
No Yes Phytophthora capsici   8 7
No Yes Hyaloperonospora arabidopsidis 22   8 4
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Symbiodinium minutum clade B1 v1.2   53 52
No Yes Guillardia theta CCMP2712 v1.0   13 13
No Yes Emiliania huxleyi CCMP1516   91 90
No Yes Leptolyngbya sp. PCC 7376   19 5
No Yes Pseudanabaena sp. PCC 7367   2 2
No Yes Acaryochloris marina MBIC11017   10 10
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   12 7
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Cyanothece sp. PCC 8802   8 8
No Yes Halothece sp. PCC 7418   1 1
No Yes Microcystis aeruginosa NIES-843   6 6
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   7 7
No Yes Anabaena variabilis ATCC 29413   5 3
No Yes Nostoc punctiforme PCC 73102   11 11
No Yes Nostoc sp. PCC 7120   5 3
No Yes Anabaena sp. 90   6 4
No Yes Conexibacter woesei DSM 14684   2 2
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Slackia heliotrinireducens DSM 20476   1 1
No Yes Modestobacter marinus   2 2
No Yes Geodermatophilus obscurus DSM 43160   11 9
No Yes Catenulispora acidiphila DSM 44928   7 7
No Yes Frankia symbiont of Datisca glomerata   15 15
No Yes Frankia sp. EAN1pec   22 22
No Yes Frankia alni ACN14a   26 25
No Yes Thermobifida fusca YX   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   7 7
No Yes Kitasatospora setae KM-6054   4 4
No Yes Streptomyces coelicolor A3(2)   8 8
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 4
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   3 2
No Yes Streptomyces scabiei 87.22   6 6
No Yes Actinosynnema mirum DSM 43827   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Microlunatus phosphovorus NM-1   3 3
No Yes Salinispora arenicola CNS-205   2 2
No Yes Micromonospora sp. L5   2 2
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   6 6
No Yes Actinoplanes missouriensis 431   4 4
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia sp. KTR9   2 2
No Yes Rhodococcus jostii RHA1   3 3
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Actinomyces sp. F0330   2 2
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Deinococcus gobiensis I-0   2 2
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Eubacterium siraeum   2 2
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   2 2
No Yes Ethanoligenens harbinense YUAN-3   1 1
No Yes Ruminococcus sp.   1 1
No Yes Ruminococcus bromii   1 1
No Yes Desulfosporosinus acidiphilus SJ4   1 1
No Yes Desulfosporosinus orientis DSM 765   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   2 2
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Clostridium saccharolyticum WM1   2 2
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium novyi NT   1 1
No Yes Clostridium beijerinckii NCIMB 8052   3 3
No Yes Clostridium cellulovorans 743B   2 2
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   1 1
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Carnobacterium sp. 17-4   1 1
No Yes Carnobacterium sp. WN1359   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   1 1
No Yes Lactobacillus crispatus ST1   2 2
No Yes Lactobacillus ruminis ATCC 27782   1 1
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Streptococcus pasteurianus ATCC 43144   1 1
No Yes Streptococcus infantarius subsp. infantarius CJ18   1 1
No Yes Streptococcus macedonicus ACA-DC 198   1 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus terrae HPL-003   2 2
No Yes Geobacillus thermoleovorans CCB_US3_UF5   1 1
No Yes Bacillus sp. 1NLA3E   2 2
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Macrococcus caseolyticus JCSC5402   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   13 13
No Yes Chlorobium phaeobacteroides DSM 266   6 6
No Yes Chlorobium limicola DSM 245   3 3
No Yes Chlorobaculum parvum NCIB 8327   3 3
No Yes Chlorobium tepidum TLS   2 2
No Yes Chloroherpeton thalassium ATCC 35110   2 2
No Yes Prosthecochloris aestuarii DSM 271   7 7
No Yes Haliscomenobacter hydrossis DSM 1100   9 9
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   7 7
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Flexibacter litoralis DSM 6794   4 2
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Spirosoma linguale DSM 74   4 4
No Yes Odoribacter splanchnicus DSM 20712   5 5
No Yes Bacteroides sp. CF50   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Porphyromonas gingivalis ATCC 33277   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   2 2
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Sphingobacterium sp. 21   2 2
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Aequorivita sublithincola DSM 14238   3 3
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Planctomyces limnophilus DSM 3776   4 4
No Yes Rhodopirellula baltica SH 1   4 4
No Yes Opitutus terrae PB90-1   2 2
No Yes Turneriella parva DSM 21527   2 2
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Treponema azotonutricium ZAS-9   6 3
No Yes Treponema denticola ATCC 35405   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   4 4
No Yes Granulicella tundricola MP5ACTX9   2 2
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Fusobacterium nucleatum subsp. nucleatum ATCC 25586   1 1
No Yes Candidatus Methylomirabilis oxyfera   2 2
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Helicobacter pylori B38   1 1
No Yes Sulfurovum sp. NBC37-1   8 7
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Syntrophus aciditrophicus SB   2 2
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   2 2
No Yes Desulfatibacillum alkenivorans AK-01   2 2
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfococcus oleovorans Hxd3   2 2
No Yes Geobacter daltonii FRC-32   3 3
No Yes Geobacter uraniireducens Rf4   2 2
No Yes Geobacter lovleyi SZ   3 3
No Yes Geobacter metallireducens GS-15   3 3
No Yes Pelobacter carbinolicus DSM 2380   2 2
No Yes Haliangium ochraceum DSM 14365   3 3
No Yes Sorangium cellulosum 'So ce 56'   10 10
No Yes Anaeromyxobacter sp. Fw109-5   4 4
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Dechloromonas aromatica RCB   4 4
No Yes Thauera sp. MZ1T   5 5
No Yes Azoarcus sp. KH32C   1 1
No Yes Azoarcus sp. BH72   4 4
No Yes Dechlorosoma suillum PS   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   9 9
No Yes Rubrivivax gelatinosus IL144   2 2
No Yes Leptothrix cholodnii SP-6   3 3
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia gladioli BSR3   2 2
No Yes Burkholderia glumae BGR1   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Polaromonas sp. JS666   2 2
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Nitrosomonas sp. Is79A3   8 8
No Yes Gallionella capsiferriformans ES-2   5 5
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   2 2
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingobium sp. SYK-6   2 2
No Yes Sphingobium japonicum UT26S   2 2
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   2 2
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hirschia baltica ATCC 49814   6 6
No Yes Hyphomonas neptunium ATCC 15444   2 2
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Rhodospirillum photometricum DSM 122   5 5
No Yes Tistrella mobilis KA081020-065   4 4
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   2 2
No Yes Methylobacterium chloromethanicum CM4   6 6
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   2 2
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   2 2
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   2 2
No Yes Brucella melitensis ATCC 23457   2 2
No Yes Brucella ovis ATCC 25840   2 2
No Yes Brucella abortus S19   2 2
No Yes Sinorhizobium fredii NGR234   2 2
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Rhizobium etli CIAT 652   2 2
No Yes Agrobacterium sp. H13-3   3 3
No Yes Beijerinckia indica subsp. indica ATCC 9039   2 2
No Yes Pelagibacterium halotolerans B2   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   4 4
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Saccharophagus degradans 2-40   1 1
No Yes Haemophilus parasuis SH0165   1 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella denitrificans OS217   3 3
No Yes Shewanella pealeana ATCC 700345   2 2
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Colwellia psychrerythraea 34H   2 2
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Marinomonas mediterranea MMB-1   2 2
No Yes Methylomonas methanica MC09   7 7
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Rhodanobacter denitrificans   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Thiocystis violascens DSM 198   3 3
No Yes Nitrosococcus halophilus Nc4   2 2
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia pseudotuberculosis IP 31758   2 2
No Yes Yersinia pestis Pestoides F   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Psychrobacter sp. G   1 1
No Yes Thiomicrospira crunogena XCL-2   2 2
No Yes Methanocella paludicola SANAE   3 3
No Yes Methanosaeta harundinacea 6Ac   2 2
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   2 2
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanococcoides burtonii DSM 6242   2 2
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   3 3
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   2 2
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Methanosphaera stadtmanae DSM 3091   1 1
No Yes Methanobrevibacter ruminantium M1   3 3
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 36 36
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 16 16
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 18 18
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 6
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 26 26
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Cyanothece sp. PCC 7822   7 7
No Yes Cyanothece sp. PCC 7425   3 3
No Yes Cyanothece sp. PCC 7424   28 20
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   9 9
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   2 2
No Yes Frankia sp. EuI1c   27 27
No Yes Frankia sp. CcI3   10 10
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces fulvissimus DSM 40593   2 2
No Yes Streptomyces venezuelae ATCC 10712   3 3
No Yes Saccharothrix espanaensis DSM 44229   11 11
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Actinoplanes friuliensis DSM 7358   4 4
No Yes Nocardia brasiliensis ATCC 700358   2 2
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Actinomyces graevenitzii C83   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Eubacterium siraeum V10Sc8a   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Ruminococcus champanellensis 18P13   2 2
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Coprococcus catus GD/7   2 2
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Enterococcus mundtii QU 25   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis str. Symbioflor 1   1 1
No Yes Enterococcus faecalis D32   2 2
No Yes Enterococcus faecalis V583   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   1 1
No Yes Lactobacillus plantarum ZJ316   1 1
No Yes Lactobacillus brevis KB290   1 1
No Yes Lactococcus lactis subsp. lactis KF147   1 1
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   1 1
No Yes Streptococcus mutans GS-5   1 1
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus mutans UA159   1 1
No Yes Streptococcus thermophilus JIM 8232   1 1
No Yes Streptococcus suis TL13   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   2 2
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus aureus 08BA02176   2 2
No Yes Staphylococcus aureus subsp. aureus 71193   2 2
No Yes Staphylococcus aureus subsp. aureus S0385   2 2
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Porphyromonas gingivalis TDC60   1 1
No Yes Porphyromonas gingivalis W83   2 2
No Yes Bacteroides xylanisolvens XB1A   2 2
No Yes Nonlabens dokdonensis DSW-6   2 2
No Yes Psychroflexus torquis ATCC 700755   2 2
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   1 1
No Yes Arcobacter butzleri 7h1h   1 1
No Yes Campylobacter jejuni Waterborne C.jejuni Outbreak   1 1
No Yes Helicobacter pylori SouthAfrica20   1 1
No Yes Helicobacter pylori UM298   1 1
No Yes Helicobacter pylori UM299   1 1
No Yes Helicobacter pylori UM032   1 1
No Yes Helicobacter pylori Rif2   1 1
No Yes Helicobacter pylori Rif1   1 1
No Yes Helicobacter pylori HUP-B14   1 1
No Yes Helicobacter pylori Shi112   1 1
No Yes Helicobacter pylori Aklavik86   1 1
No Yes Helicobacter pylori Puno120   1 1
No Yes Helicobacter pylori ELS37   1 1
No Yes Helicobacter pylori Gambia94/24   1 1
No Yes Helicobacter pylori SouthAfrica7   1 1
No Yes Helicobacter pylori India7   1 1
No Yes Helicobacter pylori F30   1 1
No Yes Helicobacter pylori Sat464   1 1
No Yes Helicobacter pylori Cuz20   1 1
No Yes Helicobacter pylori PeCan4   1 1
No Yes Helicobacter pylori SJM180   1 1
No Yes Helicobacter pylori G27   1 1
No Yes Helicobacter pylori Shi470   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Geobacter sp. M18   2 2
No Yes Geobacter sulfurreducens PCA   3 3
No Yes Sorangium cellulosum So0157-2   12 12
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   2 2
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   2 2
No Yes Brucella ceti TE28753-12   2 2
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   2 2
No Yes Brucella melitensis M5-90   2 2
No Yes Brucella melitensis M28   2 2
No Yes Brucella melitensis bv. 1 str. 16M   2 2
No Yes Brucella abortus A13334   2 2
No Yes Brucella melitensis biovar Abortus 2308   2 2
No Yes Brucella abortus bv. 1 str. 9-941   2 2
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Hyphomicrobium denitrificans 1NES1   2 2
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   2 2
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. BTAi1   4 4
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Aggregatibacter actinomycetemcomitans D11S-1   1 1
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS223   3 3
No Yes Shewanella sp. MR-7   1 1
No Yes Shewanella putrefaciens 200   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   3 3
No Yes Thioflavicoccus mobilis 8321   9 9
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   2 2
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri CCUG 29243   3 3
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida DOT-T1E   2 2
No Yes Pseudomonas putida W619   2 2
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Acinetobacter baumannii BJAB0715   4 4
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   3 3
No Yes Acinetobacter lwoffii SH145   3 3
No Yes Methylophaga sp. JAM7   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Methanobacterium sp. SWAN-1   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 78 78
No Yes Homo sapiens (NCBI version) Human 38 38
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 26 26
No Yes Heliconius numata (Incomplete)   8 8
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   172 172
No Yes Malus x domestica (Duplicate) Apple 452 433
No Yes Ricinus communis (Early assembly) Castor bean 45 45
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   8 8
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 39 37
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 41 39
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 28 28
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 23 23
No Yes Gorilla gorilla 69_3.1 Western gorilla 26 26
No Yes Pongo abelii 69_2 Sumatran orangutan 21 21
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 24 24
No Yes Macaca mulatta 69_1 Rhesus monkey 25 25
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 25 25
No Yes Otolemur garnettii 69_3 Small-eared galago 23 23
No Yes Microcebus murinus 69_1 Gray mouse lemur 18 18
No Yes Rattus norvegicus 69_3.4 Norway rat 25 25
No Yes Mus musculus 69_38 House mouse 26 26
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 18 18
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 26 26
No Yes Cavia porcellus 69_3 Domestic guinea pig 27 27
No Yes Oryctolagus cuniculus 69_2 Rabbit 23 23
No Yes Ochotona princeps 69 American pika 17 17
No Yes Tupaia belangeri 69 Northern tree shrew 15 15
No Yes Sus scrofa 69_10.2 Pig 26 26
No Yes Bos taurus 69_3.1 Cattle 21 21
No Yes Vicugna pacos 69_1 Alpaca 18 18
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 19 19
No Yes Mustela putorius furo 69_1.0 Domestic ferret 22 22
No Yes Ailuropoda melanoleuca 69_1 Giant panda 26 26
No Yes Canis familiaris 69_3.1 Dog 27 27
No Yes Felis catus 69 Domestic cat 17 17
No Yes Equus caballus 69_2 Horse 24 24
No Yes Myotis lucifugus 69_2.0 Little brown bat 23 23
No Yes Pteropus vampyrus 69_1 Large flying fox 21 21
No Yes Sorex araneus 69_1 European shrew 17 17
No Yes Erinaceus europaeus 69 Western European hedgehog 20 20
No Yes Procavia capensis 69_1 Cape rock hyrax 17 16
No Yes Loxodonta africana 69_3 African savanna elephant 25 25
No Yes Echinops telfairi 69 Small Madagascar hedgehog 17 17
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 13
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 17 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 20 20
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 24
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 20 20
No Yes Ornithorhynchus anatinus 69_5 Platypus 20 20
No Yes Petromyzon marinus 69_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 69_2 Turkey 23 23
No Yes Gallus gallus 69_2 Chicken 26 26
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 26 26
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 26 26
No Yes Anolis carolinensis 69_2.0 Green anole 26 26
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 26 26
No Yes Latimeria chalumnae 69_1 Coelacanth 29 29
No Yes Gadus morhua 69_1 Atlantic cod 32 31
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 21 21
No Yes Takifugu rubripes 69_4 Torafugu 20 20
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 20 20
No Yes Oryzias latipes 69_1 Japanese medaka 18 18
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 25 25
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 25 25
No Yes Danio rerio 69_9 Zebrafish 35 35
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 13 13
No Yes Drosophila melanogaster 69_5 Fruit fly 11 11
No Yes Caenorhabditis elegans 69_215 Roundworm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 149 140
No Yes 2_050719S (meta-genome)   2 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   4 4
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   3 3
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   3 3
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   6 6
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Combined (meta-genome)   7 7
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   11 11
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   17 17
No Yes Dump top (Dump top) (meta-genome)   9 9
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   20 20
No Yes Fungus garden combined (combined) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   11 11
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   14 14
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   10 10
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   19 19
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   18 18
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   94 94
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   30 30
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   27 27
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   23 23
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   10 10
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   25 25
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   7 7
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   51774 50723
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   27 27
No Yes Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   20 20
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   12 12
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   18 18
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   34 34
No Yes Sludge/US, Jazz Assembly (meta-genome)   14 14
No Yes Sludge/US, Phrap Assembly (meta-genome)   29 29
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   79 79
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   103 103
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   130 130
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   50 50
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   64 64
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   91 91
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   100 100
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   5 5
No Yes STRING v9.0.5 (STRING)   2511 2413
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   11 11
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   59 59
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   20 20
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   31743 30843
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   9 9
No Yes Global Ocean Sampling Expedition (GOS)   121 121
No Yes NCBI plasmid sequences (Plasmids)   79 76
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   89 89
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   137 137
No Yes TargetDB (Targets)   111 110
No Yes The Salmonella enterica Pan-genome (meta-genome)   6 6
No Yes UniProt viral sequences (Viral)   1 1

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