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N-(deoxy)ribosyltransferase-like superfamily domain assignments
in
Methanohalophilus mahii DSM 5219

Assignment details

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Methanohalophilus mahii DSM 5219 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|294496298|ref|YP_003542791.1|   5.04e-35   3-134   N-deoxyribosyltransferase  
gi|294496541|ref|YP_003543034.1|   0.000000000000275   1-115   N-deoxyribosyltransferase  

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Select to display   Genome       Domains   Proteins
No Yes ALL   46914 46914
No Yes Homo sapiens 76_38 Human 11 11
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 4
No Yes Pongo abelii 76_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 3 3
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 76_3 Small-eared galago 3 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 76_5.0 Norway rat 4 4
No Yes Mus musculus 76_38 House mouse 4 4
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 4 4
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 3 3
No Yes Cavia porcellus 76_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 3 3
No Yes Sus scrofa 76_10.2 Pig 8 8
No Yes Bos taurus 76_3.1 Cattle 3 3
No Yes Ovis aries 76_3.1 Sheep 3 3
No Yes Vicugna pacos 76_1 Alpaca 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 4 4
No Yes Canis familiaris 76_3.1 Dog 4 4
No Yes Felis catus 76_6.2 Domestic cat 3 3
No Yes Equus caballus 76_2 Horse 3 3
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 3 3
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 4 3
No Yes Procavia capensis 76_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 76_3 African savanna elephant 6 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 3
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 3 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 3 3
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   5 5
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 2 2
No Yes Gallus gallus 76_4 Chicken 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 3 3
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 2 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 2 2
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Gadus morhua 76_1 Atlantic cod 5 5
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 76_4 Torafugu 8 8
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Oryzias latipes 76_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 4 4
No Yes Poecilia formosa 76 Amazon molly 4 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 4 4
No Yes Astyanax mexicanus 76 Mexican tetra 3 3
No Yes Danio rerio 76_9 Zebrafish 2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 10 8
No Yes Adineta vaga   9 9
No Yes Crassostrea gigas 22 Pacific oyster 5 5
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   3 3
No Yes Daphnia pulex Common water flea 1 1
No Yes Schistosoma mansoni   1 1
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 3
No Yes Hydra vulgaris   9 9
No Yes Amphimedon queenslandica   4 4
No Yes Trichoplax adhaerens   4 4
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Galerina marginata v1.0   5 5
No Yes Hebeloma cylindrosporum h7 v2.0   4 4
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Podospora anserina   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma cruzi strain CL Brener   10 10
No Yes Trypanosoma congolense 2.4   2 2
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Tetrahymena thermophila SB210 1   1 1
No Yes Trichomonas vaginalis   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Ureaplasma parvum serovar 3 str. ATCC 27815   1 1
No Yes Mycoplasma fermentans M64   1 1
No Yes Mycoplasma arthritidis 158L3-1   1 1
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Atopobium parvulum DSM 20469   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 1
No Yes Actinosynnema mirum DSM 43827   3 3
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   2 2
No Yes Rhodococcus jostii RHA1   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   2 2
No Yes Bifidobacterium longum subsp. longum JDM301   1 1
No Yes Bifidobacterium animalis subsp. lactis Bl-04   1 1
No Yes Bifidobacterium breve ACS-071-V-Sch8b   1 1
No Yes Bifidobacterium bifidum S17   1 1
No Yes Mobiluncus curtisii ATCC 43063   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Oceanithermus profundus DSM 14977   2 1
No Yes Anaerococcus prevotii DSM 20548   1 1
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Selenomonas sputigena ATCC 35185   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   2 2
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Ruminococcus bromii   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   2 2
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Acetobacterium woodii DSM 1030   2 2
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Roseburia intestinalis   1 1
No Yes Heliobacterium modesticaldum Ice1   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium tetani E88   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Carnobacterium sp. 17-4   1 1
No Yes Carnobacterium sp. WN1359   1 1
No Yes Tetragenococcus halophilus NBRC 12172   3 3
No Yes Enterococcus sp. 7L76   1 1
No Yes Enterococcus hirae ATCC 9790   2 2
No Yes Enterococcus faecium Aus0004   3 3
No Yes Enterococcus faecalis 62   1 1
No Yes Weissella koreensis KACC 15510   2 2
No Yes Oenococcus oeni PSU-1   2 2
No Yes Leuconostoc sp. C2   3 3
No Yes Leuconostoc kimchii IMSNU 11154   4 4
No Yes Leuconostoc citreum KM20   2 2
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   3 3
No Yes Leuconostoc gasicomitatum LMG 18811   1 1
No Yes Lactobacillus casei ATCC 334   2 2
No Yes Lactobacillus kefiranofaciens ZW3   3 3
No Yes Lactobacillus crispatus ST1   2 2
No Yes Lactobacillus rhamnosus Lc 705   2 2
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus sanfranciscensis TMW 1.1304   1 1
No Yes Lactobacillus salivarius CECT 5713   1 1
No Yes Lactobacillus ruminis ATCC 27782   2 2
No Yes Lactobacillus fermentum IFO 3956   2 2
No Yes Lactobacillus amylovorus GRL1118   3 3
No Yes Lactobacillus sakei subsp. sakei 23K   3 3
No Yes Lactobacillus reuteri DSM 20016   1 1
No Yes Lactobacillus gasseri ATCC 33323   1 1
No Yes Lactobacillus plantarum JDM1   3 3
No Yes Lactobacillus helveticus DPC 4571   2 2
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365   2 2
No Yes Lactobacillus buchneri NRRL B-30929   1 1
No Yes Lactobacillus buchneri   1 1
No Yes Lactobacillus brevis ATCC 367   2 2
No Yes Lactobacillus acidophilus 30SC   3 3
No Yes Pediococcus claussenii ATCC BAA-344   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Lactococcus garvieae ATCC 49156   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus parauberis KCTC 11537   1 1
No Yes Exiguobacterium sp. MH3   1 1
No Yes Exiguobacterium sp. AT1b   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   2 2
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Bacillus amyloliquefaciens FZB42   2 2
No Yes Bacillus atrophaeus 1942   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus weihenstephanensis KBAB4   2 2
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus carnosus subsp. carnosus TM300   1 1
No Yes Ignavibacterium album JCM 16511   1 1
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Cyclobacterium marinum DSM 745   2 2
No Yes Spirosoma linguale DSM 74   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Simkania negevensis Z   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Isosphaera pallida ATCC 43644   2 2
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Aminobacterium colombiense DSM 12261   1 1
No Yes Borrelia garinii PBi   1 1
No Yes Borrelia bissettii DN127   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia burgdorferi B31   1 1
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Elusimicrobium minutum Pei191   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   2 2
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Arcobacter sp. L   2 2
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Sulfurimonas autotrophica DSM 16294   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Desulfomonile tiedjei DSM 6799   3 3
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio alaskensis G20   2 2
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   3 3
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter uraniireducens Rf4   2 2
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Stigmatella aurantiaca DW4/3-1   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia eutropha H16   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Acidovorax sp. KKS102   3 3
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Herbaspirillum seropedicae SmR1   2 2
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella avium 197N   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ketogulonicigenium vulgare Y25   2 2
No Yes Ketogulonigenium vulgarum WSH-001   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   2 2
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   2 2
No Yes Gluconobacter oxydans 621H   1 1
No Yes alpha proteobacterium HIMB5   1 1
No Yes alpha proteobacterium HIMB59   1 1
No Yes Candidatus Pelagibacter sp. IMCC9063   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   3 3
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylobacterium populi BJ001   3 3
No Yes Methylobacterium nodulans ORS 2060   6 6
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   2 2
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Haemophilus influenzae PittEE   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Sodalis glossinidius str. 'morsitans'   2 2
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas protegens Pf-5   2 2
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   3 3
No Yes Thermofilum sp. 1910b   2 2
No Yes Thermofilum pendens Hrk 5   2 2
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Thermoproteus tenax Kra 1   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   2 2
No Yes Methanococcoides burtonii DSM 6242   2 2
No Yes Methanosarcina acetivorans C2A   2 2
No Yes Methanosarcina mazei Go1   2 2
No Yes Methanosarcina barkeri str. Fusaro   2 2
No Yes Methanohalophilus mahii DSM 5219   2 2
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoregula boonei 6A8   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanocorpusculum labreanum Z   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Thermoplasmatales archaeon BRNA1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Natrialba magadii ATCC 43099   2 2
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Spiroplasma apis B31   1 1
No Yes Ureaplasma parvum serovar 3 str. ATCC 700970   1 1
No Yes Mycoplasma fermentans JER   1 1
No Yes Mycoplasma fermentans PG18   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Propionibacterium avidum 44067   1 1
No Yes Propionibacterium acnes 6609   1 1
No Yes Propionibacterium acnes KPA171202   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-02   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium longum subsp. longum BBMN68   1 1
No Yes Bifidobacterium longum subsp. longum F8   1 1
No Yes Bifidobacterium longum subsp. longum JCM 1217   1 1
No Yes Bifidobacterium animalis subsp. animalis ATCC 25527   1 1
No Yes Bifidobacterium animalis subsp. lactis Bl12   1 1
No Yes Bifidobacterium animalis subsp. lactis B420   1 1
No Yes Bifidobacterium animalis subsp. lactis ATCC 27673   1 1
No Yes Bifidobacterium animalis subsp. lactis BLC1   1 1
No Yes Bifidobacterium animalis subsp. lactis CNCM I-2494   1 1
No Yes Bifidobacterium animalis subsp. lactis Bi-07   1 1
No Yes Bifidobacterium animalis subsp. lactis V9   1 1
No Yes Bifidobacterium animalis subsp. lactis DSM 10140   1 1
No Yes Bifidobacterium animalis subsp. lactis BB-12   1 1
No Yes Bifidobacterium animalis subsp. lactis AD011   1 1
No Yes Bifidobacterium breve UCC2003   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes Bifidobacterium bifidum BGN4   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Erysipelothrix rhusiopathiae SY1027   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium pasteurianum BC1   2 2
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum BKT015925   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   4 4
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Enterococcus mundtii QU 25   2 2
No Yes Enterococcus casseliflavus EC20   3 3
No Yes Enterococcus faecium Aus0085   2 2
No Yes Enterococcus faecium NRRL B-2354   2 2
No Yes Enterococcus faecium DO   2 2
No Yes Enterococcus faecalis str. Symbioflor 1   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Leuconostoc carnosum JB16   2 2
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   5 5
No Yes Leuconostoc gelidum JB7   2 2
No Yes Lactobacillus paracasei subsp. paracasei 8700:2   2 2
No Yes Lactobacillus casei LOCK919   2 2
No Yes Lactobacillus casei W56   2 2
No Yes Lactobacillus casei LC2W   2 2
No Yes Lactobacillus casei BD-II   2 2
No Yes Lactobacillus casei BL23   2 2
No Yes Lactobacillus casei str. Zhang   2 2
No Yes Lactobacillus rhamnosus LOCK908   2 2
No Yes Lactobacillus rhamnosus LOCK900   2 2
No Yes Lactobacillus rhamnosus ATCC 8530   2 2
No Yes Lactobacillus rhamnosus GG   2 2
No Yes Lactobacillus rhamnosus GG   2 2
No Yes Lactobacillus johnsonii N6.2   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus salivarius UCC118   1 1
No Yes Lactobacillus fermentum F-6   2 2
No Yes Lactobacillus amylovorus GRL 1112   2 2
No Yes Lactobacillus reuteri TD1   1 1
No Yes Lactobacillus reuteri I5007   1 1
No Yes Lactobacillus reuteri JCM 1112   1 1
No Yes Lactobacillus reuteri SD2112   1 1
No Yes Lactobacillus plantarum 16   4 4
No Yes Lactobacillus plantarum ZJ316   3 3
No Yes Lactobacillus plantarum subsp. plantarum ST-III   3 3
No Yes Lactobacillus plantarum subsp. plantarum P-8   4 4
No Yes Lactobacillus plantarum WCFS1   3 3
No Yes Lactobacillus helveticus R0052   2 2
No Yes Lactobacillus helveticus H10   3 3
No Yes Lactobacillus helveticus CNRZ32   2 2
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   2 2
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842   2 2
No Yes Lactobacillus delbrueckii subsp. bulgaricus 2038   2 2
No Yes Lactobacillus brevis KB290   2 2
No Yes Lactobacillus acidophilus La-14   2 2
No Yes Lactobacillus acidophilus NCFM   2 2
No Yes Pediococcus pentosaceus SL4   1 1
No Yes Lactococcus garvieae Lg2   1 1
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis IO-1   1 1
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Lactococcus lactis subsp. lactis KF147   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris KW2   1 1
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   3 3
No Yes Listeria monocytogenes serotype 4b str. LL195   1 1
No Yes Listeria monocytogenes 07PF0776   1 1
No Yes Listeria monocytogenes M7   1 1
No Yes Listeria monocytogenes J1-220   1 1
No Yes Listeria monocytogenes J1816   1 1
No Yes Listeria monocytogenes SLCC2376   1 1
No Yes Listeria monocytogenes ATCC 19117   1 1
No Yes Listeria monocytogenes L312   1 1
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Listeria monocytogenes SLCC2378   1 1
No Yes Listeria monocytogenes L99   1 1
No Yes Listeria monocytogenes HCC23   1 1
No Yes Listeria monocytogenes Finland 1998   1 1
No Yes Listeria monocytogenes serotype 4b str. F2365   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   1 1
No Yes Bacillus amyloliquefaciens LFB112   1 1
No Yes Bacillus amyloliquefaciens CC178   2 2
No Yes Bacillus amyloliquefaciens Y2   2 2
No Yes Bacillus amyloliquefaciens IT-45   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus infantis NRRL B-14911   2 2
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   2 2
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   2 2
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   1 1
No Yes Alistipes shahii WAL 8301   1 1
No Yes Brachyspira pilosicoli WesB   1 1
No Yes Brachyspira pilosicoli B2904   1 1
No Yes Borrelia garinii NMJW1   1 1
No Yes Borrelia garinii BgVir   1 1
No Yes Borrelia afzelii HLJ01   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia burgdorferi CA382   1 1
No Yes Borrelia burgdorferi JD1   1 1
No Yes Borrelia burgdorferi N40   1 1
No Yes Borrelia burgdorferi ZS7   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Arcobacter butzleri ED-1   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Geobacter sp. M18   2 2
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Bordetella parapertussis Bpp5   1 1
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Bordetella bronchiseptica 253   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   2 2
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides KD131   5 5
No Yes Rhodobacter sphaeroides 2.4.1   5 5
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Candidatus Pelagibacter ubique HTCC1062   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Serratia liquefaciens ATCC 27592   2 2
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Escherichia coli E24377A   2 2
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   2 2
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O103:H2 str. 12009   2 2
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O26:H11 str. 11368   2 2
No Yes Escherichia coli O111:H- str. 11128   2 2
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   2 2
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas aeruginosa SCV20265   4 4
No Yes Pseudomonas aeruginosa MTB-1   3 3
No Yes Pseudomonas aeruginosa LES431   5 5
No Yes Pseudomonas aeruginosa RP73   3 3
No Yes Pseudomonas aeruginosa B136-33   3 3
No Yes Pseudomonas aeruginosa PA1R   4 4
No Yes Pseudomonas aeruginosa PA1   4 4
No Yes Pseudomonas aeruginosa DK2   3 3
No Yes Pseudomonas aeruginosa NCGM2.S1   3 3
No Yes Pseudomonas aeruginosa M18   5 5
No Yes Pseudomonas aeruginosa LESB58   5 5
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   3 3
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Methanomethylovorans hollandica DSM 15978   2 2
No Yes Methanolobus psychrophilus R15   3 3
No Yes Methanosarcina mazei Tuc01   2 2
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Candidatus Methanomethylophilus alvus Mx1201   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 11 11
No Yes Homo sapiens (NCBI version) Human 4 4
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 3 3
No Yes Homo sapiens 69_37 Human 3 3
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 69_3.1 Western gorilla 3 3
No Yes Pongo abelii 69_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 3 3
No Yes Microcebus murinus 69_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 69_3.4 Norway rat 4 4
No Yes Mus musculus 69_38 House mouse 3 3
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 3 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 3 3
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 3 3
No Yes Sus scrofa 69_10.2 Pig 3 3
No Yes Bos taurus 69_3.1 Cattle 3 3
No Yes Vicugna pacos 69_1 Alpaca 2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 3 3
No Yes Canis familiaris 69_3.1 Dog 3 3
No Yes Felis catus 69 Domestic cat 3 3
No Yes Equus caballus 69_2 Horse 3 3
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 3 3
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 4 3
No Yes Procavia capensis 69_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 3
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 3 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 3 3
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 2 2
No Yes Gallus gallus 69_2 Chicken 2 2
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 3 3
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 69_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 4 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 4 4
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   4 4
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Combined (meta-genome)   7 7
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   11 11
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   5 5
No Yes Dump bottom (Dump bottom) (meta-genome)   27 27
No Yes Dump top (Dump top) (meta-genome)   18 18
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   5 5
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   12 12
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   16 16
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   4 4
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   8 8
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   3 3
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   4 4
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   4 4
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   5 5
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   32182 32110
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   20 20
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   11 11
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   10 10
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   8 8
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   16 16
No Yes Single-cell genome from subgingival tooth surface TM7c (meta-genome)   1 1
No Yes Sludge/US, Jazz Assembly (meta-genome)   4 4
No Yes Sludge/US, Phrap Assembly (meta-genome)   4 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   19 19
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   11 11
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   8 8
No Yes STRING v9.0.5 (STRING)   453 451
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   10 10
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   9858 9816
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   10 10
No Yes Global Ocean Sampling Expedition (GOS)   529 529
No Yes NCBI plasmid sequences (Plasmids)   29 29
No Yes NCBI viral sequences (Viral)   80 80
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   282 282
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   898 898
No Yes TargetDB (Targets)   22 22
No Yes UniProt viral sequences (Viral)   28 28

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