SUPERFAMILY 1.75 HMM library and genome assignments server

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Higher-molecular-weight phosphotyrosine protein phosphatases family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   97370 97370
No Yes Homo sapiens 76_38 Human 220 158
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 47 35
No Yes Gorilla gorilla 76_3.1 Western gorilla 76 55
No Yes Pongo abelii 76_2 Sumatran orangutan 54 40
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 48 37
No Yes Papio anubis 76 Olive baboon 60 46
No Yes Macaca mulatta 76_1 Rhesus monkey 111 80
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 141 104
No Yes Otolemur garnettii 76_3 Small-eared galago 51 38
No Yes Microcebus murinus 76_1 Gray mouse lemur 37 30
No Yes Rattus norvegicus 76_5.0 Norway rat 72 49
No Yes Mus musculus 76_38 House mouse 111 80
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 42 31
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 44 34
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 45 34
No Yes Cavia porcellus 76_3 Domestic guinea pig 43 33
No Yes Oryctolagus cuniculus 76_2 Rabbit 49 37
No Yes Ochotona princeps 76 American pika 41 32
No Yes Tupaia belangeri 76 Northern tree shrew 35 26
No Yes Sus scrofa 76_10.2 Pig 57 45
No Yes Bos taurus 76_3.1 Cattle 53 40
No Yes Ovis aries 76_3.1 Sheep 60 45
No Yes Vicugna pacos 76_1 Alpaca 26 22
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 45 35
No Yes Mustela putorius furo 76_1.0 Domestic ferret 50 37
No Yes Ailuropoda melanoleuca 76_1 Giant panda 59 44
No Yes Canis familiaris 76_3.1 Dog 76 56
No Yes Felis catus 76_6.2 Domestic cat 55 42
No Yes Equus caballus 76_2 Horse 68 50
No Yes Myotis lucifugus 76_2.0 Little brown bat 45 36
No Yes Pteropus vampyrus 76_1 Large flying fox 46 36
No Yes Sorex araneus 76_1 European shrew 30 22
No Yes Erinaceus europaeus 76 Western European hedgehog 27 23
No Yes Procavia capensis 76_1 Cape rock hyrax 43 34
No Yes Loxodonta africana 76_3 African savanna elephant 86 61
No Yes Echinops telfairi 76 Small Madagascar hedgehog 37 28
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 77 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 28 22
No Yes Macropus eugenii 76_1.0 Tammar wallaby 42 30
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 50 40
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 53 42
No Yes Ornithorhynchus anatinus 76_5 Platypus 57 45
No Yes Saccoglossus kowalevskii v3.0   53 41
No Yes Petromyzon marinus 76_7.0 Sea lamprey 30 24
No Yes Meleagris gallopavo 76_2 Turkey 64 46
No Yes Gallus gallus 76_4 Chicken 59 43
No Yes Anas platyrhynchos 76_1.0 Mallard 50 37
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 54 43
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 49 36
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 58 42
No Yes Anolis carolinensis 76_2.0 Green anole 50 39
No Yes Xenopus laevis African clawed frog 65 50
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 53 42
No Yes Latimeria chalumnae 76_1 Coelacanth 66 52
No Yes Lepisosteus oculatus 76 Spotted gar 73 54
No Yes Gadus morhua 76_1 Atlantic cod 63 45
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 116 76
No Yes Takifugu rubripes 76_4 Torafugu 283 179
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 85 61
No Yes Oryzias latipes 76_1 Japanese medaka 71 52
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 62 50
No Yes Poecilia formosa 76 Amazon molly 68 50
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 97 70
No Yes Astyanax mexicanus 76 Mexican tetra 72 53
No Yes Danio rerio 76_9 Zebrafish 121 91
No Yes Oikopleura dioica   15 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 96 59
No Yes Ciona intestinalis 76 Vase tunicate 34 26
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 61 44
No Yes Adineta vaga   58 48
No Yes Octopus bimaculoides 280   30 24
No Yes Crassostrea gigas 22 Pacific oyster 79 69
No Yes Lottia gigantea Owl limpet 41 38
No Yes Helobdella robusta   42 33
No Yes Capitella sp. I   68 59
No Yes Danaus plexippus OGS1.0 Monarch butterfly 15 12
No Yes Heliconius melpomene Postman butterfly 11 9
No Yes Bombyx mori Domestic silkworm 12 11
No Yes Nasonia vitripennis Jewel wasp 15 12
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 46 32
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 18 14
No Yes Linepithema humile v1.1 Argentine ant 14 11
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 18 16
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 19
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 15 12
No Yes Atta cephalotes v1.1   15 13
No Yes Camponotus floridanus v3.3 Florida carpenter ant 18 14
No Yes Lucilia cuprina Australian sheep blowfly 13 11
No Yes Drosophila grimshawi 1.3   18 14
No Yes Drosophila willistoni 1.3   16 12
No Yes Drosophila pseudoobscura 2.13   18 14
No Yes Drosophila persimilis 1.3   14 12
No Yes Drosophila suzukii   17 13
No Yes Drosophila yakuba 1.3   17 14
No Yes Drosophila simulans 1.3   12 10
No Yes Drosophila sechellia 1.3   22 19
No Yes Drosophila melanogaster 76_5 Fruit fly 71 56
No Yes Drosophila erecta 1.3   16 13
No Yes Drosophila ananassae 1.3   17 14
No Yes Drosophila virilis 1.2   15 11
No Yes Drosophila mojavensis 1.3   17 13
No Yes Megaselia scalaris 22   4 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 20 15
No Yes Culex pipiens quinquefasciatus Southern house mosquito 13 10
No Yes Anopheles darlingi 22 American malaria mosquito 12 9
No Yes Anopheles gambiae 49_3j African malaria mosquito 18 14
No Yes Tribolium castaneum 3.0 Red flour beetle 27 20
No Yes Pediculus humanus corporis (Early assembly) Human body louse 19 15
No Yes Acyrthosiphon pisum Pea aphid 12 10
No Yes Rhodnius prolixus 22   13 10
No Yes Daphnia pulex Common water flea 20 17
No Yes Strigamia maritima 22   21 17
No Yes Sarcoptes scabiei   18 14
No Yes Tetranychus urticae Two-spotted spider mite 16 13
No Yes Ixodes scapularis (Preliminary) Black-legged tick 16 14
No Yes Pristionchus pacificus   22 21
No Yes Meloidogyne incognita Southern root-knot nematode 15 15
No Yes Meloidogyne hapla   7 7
No Yes Onchocerca volvulus 22   23 21
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 25 22
No Yes Caenorhabditis japonica   26 23
No Yes Caenorhabditis brenneri   40 38
No Yes Caenorhabditis remanei   38 35
No Yes Caenorhabditis elegans 76_235 Roundworm 69 56
No Yes Caenorhabditis briggsae 2   27 25
No Yes Trichinella spiralis 22   13 12
No Yes Hymenolepis microstoma   22 18
No Yes Echinococcus multilocularis   25 21
No Yes Echinococcus granulosus   23 19
No Yes Taenia solium Pork tapeworm 19 16
No Yes Schistosoma mansoni   21 17
No Yes Mnemiopsis leidyi Sea walnut 19 17
No Yes Thelohanellus kitauei   4 4
No Yes Acropora digitifera v1.0   31 24
No Yes Nematostella vectensis 1.0 Starlet sea anemone 54 38
No Yes Hydra vulgaris   32 25
No Yes Amphimedon queenslandica   82 61
No Yes Trichoplax adhaerens   18 15
No Yes Proterospongia sp. ATCC 50818   34 33
No Yes Monosiga brevicollis   26 26
No Yes Sphaeroforma arctica JP610   2 2
No Yes Capsaspora owczarzaki ATCC 30864   8 7
No Yes Conidiobolus coronatus NRRL28638 v1.0   2 2
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   4 4
No Yes Mucor circinelloides   4 4
No Yes Rhizomucor miehei CAU432   1 1
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   2 2
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 3 3
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   2 2
No Yes Didymella exigua CBS 183.55 v1.0   2 2
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   2 2
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 2
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   2 2
No Yes Pyrenophora tritici-repentis   2 2
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 2
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   2 2
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   2 2
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   2 2
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   2 2
No Yes Trichophyton tonsurans CBS 112818   2 2
No Yes Trichophyton rubrum CBS 118892   2 2
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   2 2
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   3 3
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Hansenula polymorpha v2.0   2 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 2
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 3
No Yes Candida dubliniensis CD36   2 2
No Yes Candida tropicalis MYA-3404   1 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   2 2
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 2
No Yes Pichia stipitis CBS 6054   2 2
No Yes Candida guilliermondii ATCC 6260   3 3
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 3
No Yes Debaromyces hansenii   3 3
No Yes Wickerhamomyces anomalus   3 3
No Yes Pichia pastoris GS115   2 2
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   2 2
No Yes Candida lusitaniae ATCC 42720   3 3
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   3 3
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Kluyveromyces thermotolerans CBS 6340   1 1
No Yes Lachancea kluyveri   1 1
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   2 2
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   3 3
No Yes Schizosaccharomyces octosporus yFS286   3 3
No Yes Schizosaccharomyces japonicus yFS275   3 3
No Yes Schizosaccharomyces pombe Fission yeast 3 3
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   3 3
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   4 4
No Yes Dictyostelium purpureum   3 3
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   2 2
No Yes Entamoeba histolytica 1   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   5 5
No Yes Citrus sinensis v154 Sweet orange 4 4
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 2 2
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 1 1
No Yes Aquilegia coerulea v195   4 4
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   3 3
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   3 3
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 3 3
No Yes Oryza sativa v193 Rice 3 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 5 5
No Yes Setaria italica v164 Foxtail millet 4 4
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Sorghum bicolor Sorghum 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   3 3
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Paramecium tetraurelia   11 11
No Yes Tetrahymena thermophila SB210 1   2 2
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Naegleria gruberi   2 2
No Yes Parachlamydia acanthamoebae UV-7   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 53 43
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 56 46
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 23 18
No Yes Ascaris suum Victoria/Ghent Pig roundworm 36 34
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 52 44
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Paracoccidioides brasiliensis Pb01   2 2
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 2394   2 2
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   2 2
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae M22   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae Y10   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Schizosaccharomyces pombe 972h-   3 3
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 270 196
No Yes Homo sapiens (NCBI version) Human 133 100
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 49 37
No Yes Loa loa v3.3 (Request) Eye worm 23 21
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 14 13
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 19 17
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Homo sapiens 69_37 Human 54 41
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 47 35
No Yes Gorilla gorilla 69_3.1 Western gorilla 49 37
No Yes Pongo abelii 69_2 Sumatran orangutan 48 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 46 35
No Yes Macaca mulatta 69_1 Rhesus monkey 53 41
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 50 38
No Yes Otolemur garnettii 69_3 Small-eared galago 49 37
No Yes Microcebus murinus 69_1 Gray mouse lemur 37 30
No Yes Rattus norvegicus 69_3.4 Norway rat 48 37
No Yes Mus musculus 69_38 House mouse 49 37
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 42 31
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 32
No Yes Cavia porcellus 69_3 Domestic guinea pig 43 33
No Yes Oryctolagus cuniculus 69_2 Rabbit 44 34
No Yes Ochotona princeps 69 American pika 41 32
No Yes Tupaia belangeri 69 Northern tree shrew 35 26
No Yes Sus scrofa 69_10.2 Pig 49 39
No Yes Bos taurus 69_3.1 Cattle 51 39
No Yes Vicugna pacos 69_1 Alpaca 26 22
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 45 35
No Yes Mustela putorius furo 69_1.0 Domestic ferret 48 36
No Yes Ailuropoda melanoleuca 69_1 Giant panda 51 39
No Yes Canis familiaris 69_3.1 Dog 50 38
No Yes Felis catus 69 Domestic cat 35 27
No Yes Equus caballus 69_2 Horse 47 37
No Yes Myotis lucifugus 69_2.0 Little brown bat 43 34
No Yes Pteropus vampyrus 69_1 Large flying fox 46 36
No Yes Sorex araneus 69_1 European shrew 30 22
No Yes Erinaceus europaeus 69 Western European hedgehog 27 23
No Yes Procavia capensis 69_1 Cape rock hyrax 43 34
No Yes Loxodonta africana 69_3 African savanna elephant 51 39
No Yes Echinops telfairi 69 Small Madagascar hedgehog 37 28
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 33 24
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 28 22
No Yes Macropus eugenii 69_1.0 Tammar wallaby 42 30
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 43 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 49 39
No Yes Ornithorhynchus anatinus 69_5 Platypus 47 38
No Yes Petromyzon marinus 69_7.0 Sea lamprey 29 23
No Yes Meleagris gallopavo 69_2 Turkey 47 35
No Yes Gallus gallus 69_2 Chicken 47 35
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 54 43
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 43 32
No Yes Anolis carolinensis 69_2.0 Green anole 49 39
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 47 36
No Yes Latimeria chalumnae 69_1 Coelacanth 50 38
No Yes Gadus morhua 69_1 Atlantic cod 63 45
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 69 50
No Yes Takifugu rubripes 69_4 Torafugu 66 47
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 68 49
No Yes Oryzias latipes 69_1 Japanese medaka 62 45
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 62 50
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 69 50
No Yes Danio rerio 69_9 Zebrafish 70 52
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 29 20
No Yes Ciona intestinalis 69 Vase tunicate 32 24
No Yes Drosophila melanogaster 69_5 Fruit fly 18 14
No Yes Caenorhabditis elegans 69_215 Roundworm 29 27
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   54932 39098
No Yes Protozoadb 2010_08 (Protozoadb)   11 11
No Yes STRING v9.0.5 (STRING)   2039 1602
No Yes Uniprot 2018_03 genome   22343 17443
No Yes Global Ocean Sampling Expedition (GOS)   6 6
No Yes NCBI plasmid sequences (Plasmids)   24 24
No Yes NCBI viral sequences (Viral)   31 31
No Yes PDB chains (SCOP 1.75) (PDB)   43 42
No Yes Protein Data Bank (all PDB sequenc)   406 395
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1161 1161
No Yes TargetDB (Targets)   227 161
No Yes The Salmonella enterica Pan-genome (meta-genome)   26 26
No Yes UniProt viral sequences (Viral)   65 65

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