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Integrin A (or I) domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 46 significant domains in 46 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ao3A   3.38e-45   0.000000183   4-187   1atz A:  
1aoxA   5.05e-54   0.0000000292   4-200   1aox A:  
1atzA   1.85e-45   0.000000198   5-188   1atz A:  
1auqA   8.06e-47   0.0000000505   11-202   1fns A:  
1ck4A   4.62e-54   0.0000000385   1-194   1ck4 A:  
1dziA   6.15e-52   0.000000086   3-181   1aox A:  
1fnsA   1.29e-46   0.0000000505   2-193   1fns A:  
1idn1   2.42e-50   0.0000000633   2-186   1mf7 A:  
1idoA   1.53e-50   0.0000000494   2-188   1mf7 A:  
1ijbA   1.85e-46   0.0000000548   9-199   1fns A:  
1jlmA   3.38e-51   0.0000000414   2-191   1mf7 A:  
1jv2B   1.08e-85   0.00000000032   107-354   1jv2 B:107-354  
1lfaA   2.21e-43   0.0000000641   5-183   1lfa A:  
1m10A   8.06e-47   0.0000000505   11-202   1fns A:  
1m1uA   5.96e-50   0.0000000596   10-194   1mf7 A:  
1mf7A   2.01e-51   0.0000000373   1-191   1mf7 A:  
1mhpA   1.54e-54   0.0000000559   3-191   1ck4 A:  
1mjnA   4.58e-42   0.0000000742   2-179   1lfa A:  
1mq8B   1.02e-41   0.0000000797   1-177   1lfa A:  
1mq9A   1.44e-42   0.0000000804   3-180   1lfa A:  
1n3yA   7.44e-49   0.000000105   11-193   1n3y A:  
1n9zA   2.98e-50   0.0000000664   5-190   1mf7 A:  
1na5A   2.74e-51   0.0000000414   1-190   1mf7 A:  
1oakA   7.33e-47   0.0000000505   2-193   1fns A:  
1pt6A   4.18e-52   0.0000000458   4-197   1qc5 A:  
1q0pA   7.01e-58   0.000000088   5-218   2ok5 A:200-452  
1qc5A   1.98e-51   0.0000000447   4-192   1qc5 A:  
1qc5B   3.15e-53   0.0000000497   4-192   1qc5 A:  
1qcyA   1.68e-51   0.0000000497   3-192   1qc5 A:  
1rd4A   2.46e-43   0.0000000641   9-187   1lfa A:  
1rrkA   2.01e-53   0.000000158   2-205   2ok5 A:200-452  
1shtX   7.82e-39   0.0000000346   3-178   1shu X:  
1shuX   2.18e-39   0.0000000269   3-182   1shu X:  
1sq0A   9.67e-47   0.0000000505   13-204   1fns A:  
1t6bY   1.13e-37   0.0000000442   11-182   1shu X:  
1tyeB   3.7e-86   0.00000000032   107-354   1jv2 B:107-354  
1u0oC   2.5e-46   0.0000000482   11-202   1u0o C:507-702  
1uexC   8.86e-47   0.0000000505   12-203   1fns A:  
1v7pC   2.78e-53   0.000000039   6-198   1aox A:  
1xuoA   3.05e-43   0.000000182   6-184   1lfa A:  
2adfA   2.18e-45   0.000000198   11-194   1atz A:  
2b2xA   6.28e-55   0.0000000521   19-212   1ck4 A:  
2icaA   5e-43   0.0000000749   6-182   1lfa A:  
2ok5A   4.48e-60   0.0000000615   188-457   2ok5 A:200-452  
3bqnB   3.05e-43   0.000000182   2-180   1lfa A:  
3e2mA   3.31e-43   0.000000182   5-183   1lfa A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   24107 24107
No Yes Homo sapiens 76_38 Human 123 122
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 23 22
No Yes Gorilla gorilla 76_3.1 Western gorilla 39 39
No Yes Pongo abelii 76_2 Sumatran orangutan 24 23
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 24 23
No Yes Papio anubis 76 Olive baboon 27 26
No Yes Macaca mulatta 76_1 Rhesus monkey 36 35
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 55 54
No Yes Otolemur garnettii 76_3 Small-eared galago 23 22
No Yes Microcebus murinus 76_1 Gray mouse lemur 18 17
No Yes Rattus norvegicus 76_5.0 Norway rat 27 26
No Yes Mus musculus 76_38 House mouse 63 61
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 22 21
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 29 28
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 22 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 27 26
No Yes Oryctolagus cuniculus 76_2 Rabbit 26 25
No Yes Ochotona princeps 76 American pika 21 20
No Yes Tupaia belangeri 76 Northern tree shrew 19 17
No Yes Sus scrofa 76_10.2 Pig 36 36
No Yes Bos taurus 76_3.1 Cattle 30 28
No Yes Ovis aries 76_3.1 Sheep 33 31
No Yes Vicugna pacos 76_1 Alpaca 13 13
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 25 23
No Yes Mustela putorius furo 76_1.0 Domestic ferret 21 20
No Yes Ailuropoda melanoleuca 76_1 Giant panda 25 24
No Yes Canis familiaris 76_3.1 Dog 34 33
No Yes Felis catus 76_6.2 Domestic cat 24 23
No Yes Equus caballus 76_2 Horse 30 29
No Yes Myotis lucifugus 76_2.0 Little brown bat 24 23
No Yes Pteropus vampyrus 76_1 Large flying fox 24 23
No Yes Sorex araneus 76_1 European shrew 17 16
No Yes Erinaceus europaeus 76 Western European hedgehog 21 21
No Yes Procavia capensis 76_1 Cape rock hyrax 22 22
No Yes Loxodonta africana 76_3 African savanna elephant 28 27
No Yes Echinops telfairi 76 Small Madagascar hedgehog 21 20
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 22 20
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 15 15
No Yes Macropus eugenii 76_1.0 Tammar wallaby 23 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 30 28
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 24 23
No Yes Ornithorhynchus anatinus 76_5 Platypus 19 19
No Yes Saccoglossus kowalevskii v3.0   4 4
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 11
No Yes Meleagris gallopavo 76_2 Turkey 21 20
No Yes Gallus gallus 76_4 Chicken 22 19
No Yes Anas platyrhynchos 76_1.0 Mallard 17 16
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 18 17
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 16 15
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 27 26
No Yes Anolis carolinensis 76_2.0 Green anole 20 19
No Yes Xenopus laevis African clawed frog 29 29
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 20 19
No Yes Latimeria chalumnae 76_1 Coelacanth 31 29
No Yes Lepisosteus oculatus 76 Spotted gar 34 33
No Yes Gadus morhua 76_1 Atlantic cod 27 26
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 36 35
No Yes Takifugu rubripes 76_4 Torafugu 132 130
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 34 33
No Yes Oryzias latipes 76_1 Japanese medaka 35 35
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 27 26
No Yes Poecilia formosa 76 Amazon molly 26 25
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 46 45
No Yes Astyanax mexicanus 76 Mexican tetra 31 31
No Yes Danio rerio 76_9 Zebrafish 60 56
No Yes Oikopleura dioica   4 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 21 21
No Yes Ciona intestinalis 76 Vase tunicate 5 5
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 5
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   6 6
No Yes Crassostrea gigas 22 Pacific oyster 7 6
No Yes Lottia gigantea Owl limpet 4 3
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 4
No Yes Heliconius melpomene Postman butterfly 3 3
No Yes Bombyx mori Domestic silkworm 4 4
No Yes Nasonia vitripennis Jewel wasp 3 3
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 8 8
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 3
No Yes Linepithema humile v1.1 Argentine ant 3 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 4 2
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 3 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 3 3
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 3 3
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   2 2
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 2 2
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 4 4
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 5
No Yes Hydra vulgaris   3 3
No Yes Amphimedon queenslandica   8 8
No Yes Trichoplax adhaerens   3 3
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 27 24
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 128 127
No Yes Homo sapiens (NCBI version) Human 36 35
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 27 26
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 41 40
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 23 22
No Yes Gorilla gorilla 69_3.1 Western gorilla 23 23
No Yes Pongo abelii 69_2 Sumatran orangutan 22 21
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 23 22
No Yes Macaca mulatta 69_1 Rhesus monkey 23 22
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 22 21
No Yes Otolemur garnettii 69_3 Small-eared galago 23 22
No Yes Microcebus murinus 69_1 Gray mouse lemur 18 17
No Yes Rattus norvegicus 69_3.4 Norway rat 22 21
No Yes Mus musculus 69_38 House mouse 28 27
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 22 21
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 24 23
No Yes Cavia porcellus 69_3 Domestic guinea pig 24 23
No Yes Oryctolagus cuniculus 69_2 Rabbit 27 26
No Yes Ochotona princeps 69 American pika 21 20
No Yes Tupaia belangeri 69 Northern tree shrew 19 17
No Yes Sus scrofa 69_10.2 Pig 21 21
No Yes Bos taurus 69_3.1 Cattle 26 24
No Yes Vicugna pacos 69_1 Alpaca 13 13
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 25 23
No Yes Mustela putorius furo 69_1.0 Domestic ferret 21 20
No Yes Ailuropoda melanoleuca 69_1 Giant panda 25 24
No Yes Canis familiaris 69_3.1 Dog 26 25
No Yes Felis catus 69 Domestic cat 16 15
No Yes Equus caballus 69_2 Horse 26 25
No Yes Myotis lucifugus 69_2.0 Little brown bat 22 21
No Yes Pteropus vampyrus 69_1 Large flying fox 24 23
No Yes Sorex araneus 69_1 European shrew 17 16
No Yes Erinaceus europaeus 69 Western European hedgehog 21 21
No Yes Procavia capensis 69_1 Cape rock hyrax 22 22
No Yes Loxodonta africana 69_3 African savanna elephant 23 22
No Yes Echinops telfairi 69 Small Madagascar hedgehog 21 20
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 13
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 15 15
No Yes Macropus eugenii 69_1.0 Tammar wallaby 23 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 22 21
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 23 22
No Yes Ornithorhynchus anatinus 69_5 Platypus 18 18
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 69_2 Turkey 17 16
No Yes Gallus gallus 69_2 Chicken 17 15
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 18 17
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 23 22
No Yes Anolis carolinensis 69_2.0 Green anole 20 19
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 19 18
No Yes Latimeria chalumnae 69_1 Coelacanth 24 23
No Yes Gadus morhua 69_1 Atlantic cod 25 24
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 25 24
No Yes Takifugu rubripes 69_4 Torafugu 27 26
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 26 25
No Yes Oryzias latipes 69_1 Japanese medaka 27 27
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 27 26
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 34 33
No Yes Danio rerio 69_9 Zebrafish 38 35
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 69 Vase tunicate 5 5
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes NCBI 2017_08 genome   9947 9575
No Yes STRING v9.0.5 (STRING)   651 628
No Yes Uniprot 2018_03 genome   7038 6843
No Yes PDB chains (SCOP 1.75) (PDB)   46 46
No Yes Protein Data Bank (all PDB sequenc)   333 333
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   728 728
No Yes TargetDB (Targets)   12 12

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