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MHC antigen-recognition domain superfamily domain assignments
in
Brachypodium distachyon


No domain assignments for these genomes.


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View all assignments containing a MHC antigen-recognition domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   126334 126334
No Yes Homo sapiens 76_38 Human 591 591
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 49 49
No Yes Gorilla gorilla 76_3.1 Western gorilla 73 72
No Yes Pongo abelii 76_2 Sumatran orangutan 53 53
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 37 37
No Yes Papio anubis 76 Olive baboon 58 57
No Yes Macaca mulatta 76_1 Rhesus monkey 117 117
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 113 113
No Yes Otolemur garnettii 76_3 Small-eared galago 50 50
No Yes Microcebus murinus 76_1 Gray mouse lemur 29 29
No Yes Rattus norvegicus 76_5.0 Norway rat 79 79
No Yes Mus musculus 76_38 House mouse 95 95
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 24 24
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 73 72
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 18 18
No Yes Cavia porcellus 76_3 Domestic guinea pig 49 49
No Yes Oryctolagus cuniculus 76_2 Rabbit 48 48
No Yes Ochotona princeps 76 American pika 43 43
No Yes Tupaia belangeri 76 Northern tree shrew 34 34
No Yes Sus scrofa 76_10.2 Pig 50 50
No Yes Bos taurus 76_3.1 Cattle 69 69
No Yes Ovis aries 76_3.1 Sheep 70 70
No Yes Vicugna pacos 76_1 Alpaca 15 15
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 13 13
No Yes Mustela putorius furo 76_1.0 Domestic ferret 39 39
No Yes Ailuropoda melanoleuca 76_1 Giant panda 32 32
No Yes Canis familiaris 76_3.1 Dog 36 36
No Yes Felis catus 76_6.2 Domestic cat 36 36
No Yes Equus caballus 76_2 Horse 75 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 125 125
No Yes Pteropus vampyrus 76_1 Large flying fox 27 27
No Yes Sorex araneus 76_1 European shrew 57 57
No Yes Erinaceus europaeus 76 Western European hedgehog 31 31
No Yes Procavia capensis 76_1 Cape rock hyrax 36 36
No Yes Loxodonta africana 76_3 African savanna elephant 61 60
No Yes Echinops telfairi 76 Small Madagascar hedgehog 34 34
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 106 104
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 19 19
No Yes Macropus eugenii 76_1.0 Tammar wallaby 37 37
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 45 45
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 41 41
No Yes Ornithorhynchus anatinus 76_5 Platypus 21 21
No Yes Meleagris gallopavo 76_2 Turkey 11 11
No Yes Gallus gallus 76_4 Chicken 36 36
No Yes Anas platyrhynchos 76_1.0 Mallard 16 16
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 23 23
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 14 14
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 18 17
No Yes Anolis carolinensis 76_2.0 Green anole 25 25
No Yes Xenopus laevis African clawed frog 136 136
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 37 37
No Yes Latimeria chalumnae 76_1 Coelacanth 41 41
No Yes Lepisosteus oculatus 76 Spotted gar 15 15
No Yes Gadus morhua 76_1 Atlantic cod 15 15
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 18 18
No Yes Takifugu rubripes 76_4 Torafugu 39 39
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 68 68
No Yes Oryzias latipes 76_1 Japanese medaka 39 39
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 27 26
No Yes Poecilia formosa 76 Amazon molly 37 37
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 105 104
No Yes Astyanax mexicanus 76 Mexican tetra 47 47
No Yes Danio rerio 76_9 Zebrafish 54 54
No Yes Saccharomyces mikatae MIT   1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 5 5
No Yes Thellungiella halophila v173   1 1
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 2 2
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 60 59
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 581 581
No Yes Homo sapiens (NCBI version) Human 98 98
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 55 55
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Homo sapiens 69_37 Human 180 177
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 40 40
No Yes Gorilla gorilla 69_3.1 Western gorilla 35 34
No Yes Pongo abelii 69_2 Sumatran orangutan 50 50
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 33 32
No Yes Macaca mulatta 69_1 Rhesus monkey 64 64
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 64 64
No Yes Otolemur garnettii 69_3 Small-eared galago 47 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 29 29
No Yes Rattus norvegicus 69_3.4 Norway rat 71 71
No Yes Mus musculus 69_38 House mouse 53 53
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 24 24
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 69 68
No Yes Cavia porcellus 69_3 Domestic guinea pig 41 41
No Yes Oryctolagus cuniculus 69_2 Rabbit 45 45
No Yes Ochotona princeps 69 American pika 43 43
No Yes Tupaia belangeri 69 Northern tree shrew 34 34
No Yes Sus scrofa 69_10.2 Pig 30 30
No Yes Bos taurus 69_3.1 Cattle 61 61
No Yes Vicugna pacos 69_1 Alpaca 15 15
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 13 13
No Yes Mustela putorius furo 69_1.0 Domestic ferret 39 39
No Yes Ailuropoda melanoleuca 69_1 Giant panda 32 32
No Yes Canis familiaris 69_3.1 Dog 29 29
No Yes Felis catus 69 Domestic cat 30 30
No Yes Equus caballus 69_2 Horse 66 66
No Yes Myotis lucifugus 69_2.0 Little brown bat 120 120
No Yes Pteropus vampyrus 69_1 Large flying fox 27 27
No Yes Sorex araneus 69_1 European shrew 57 57
No Yes Erinaceus europaeus 69 Western European hedgehog 31 31
No Yes Procavia capensis 69_1 Cape rock hyrax 36 36
No Yes Loxodonta africana 69_3 African savanna elephant 48 47
No Yes Echinops telfairi 69 Small Madagascar hedgehog 34 34
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 31 31
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 19 19
No Yes Macropus eugenii 69_1.0 Tammar wallaby 37 37
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 29 29
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 38 38
No Yes Ornithorhynchus anatinus 69_5 Platypus 21 21
No Yes Meleagris gallopavo 69_2 Turkey 10 10
No Yes Gallus gallus 69_2 Chicken 22 22
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 23 23
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 16 15
No Yes Anolis carolinensis 69_2.0 Green anole 26 26
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 31 31
No Yes Latimeria chalumnae 69_1 Coelacanth 39 39
No Yes Gadus morhua 69_1 Atlantic cod 15 15
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 16 16
No Yes Takifugu rubripes 69_4 Torafugu 15 15
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 31 31
No Yes Oryzias latipes 69_1 Japanese medaka 26 26
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 27 26
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 92 91
No Yes Danio rerio 69_9 Zebrafish 40 40
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   12146 11968
No Yes STRING v9.0.5 (STRING)   1111 1108
No Yes Uniprot 2018_03 genome   96097 95956
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   25 25
No Yes PDB chains (SCOP 1.75) (PDB)   190 190
No Yes Protein Data Bank (all PDB sequenc)   2197 2197
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4659 4659
No Yes TargetDB (Targets)   139 139
No Yes UniProt viral sequences (Viral)   119 119

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