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UBC-like superfamily domain assignments
in
Vanderwaltozyma polyspora DSM 70294

Assignment details

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Vanderwaltozyma polyspora DSM 70294 has 18 significant domains in 18 proteins.

     

Sequence ID   Evalue   Region   Family  
tr|A7TE96|A7TE96_VANPO   1.29e-29   1-101   UBC-related  
tr|A7TEM2|A7TEM2_VANPO   6.48e-18   2-82,118-155   RWD domain  
tr|A7TG20|A7TG20_VANPO   0.00000000948   5-105   UBC-related  
tr|A7TGA0|A7TGA0_VANPO   4.4e-23   4-133   RWD domain  
tr|A7TGC4|A7TGC4_VANPO   8.24e-21   415-531   RWD domain  
tr|A7TI46|A7TI46_VANPO   3.36e-42   6-146   UBC-related  
tr|A7TL34|A7TL34_VANPO   1.09e-52   10-152   UBC-related  
tr|A7TL65|A7TL65_VANPO   1.41e-46   10-167   UBC-related  
tr|A7TLL3|A7TLL3_VANPO   3.58e-57   3-160   UBC-related  
tr|A7TM13|A7TM13_VANPO   1.7e-63   3-147   UBC-related  
tr|A7TMT0|A7TMT0_VANPO   8.89e-52   2-150   UBC-related  
tr|A7TMT8|A7TMT8_VANPO   9.7e-45   6-149   UBC-related  
tr|A7TP75|A7TP75_VANPO   3.67e-41   2-150   UBC-related  
tr|A7TQ68|A7TQ68_VANPO   1.75e-40   2-121   UBC-related  
tr|A7TQ78|A7TQ78_VANPO   6.98e-24   16-146   UEV domain  
tr|A7TR44|A7TR44_VANPO   3.39e-59   1-151   UBC-related  
tr|A7TRY4|A7TRY4_VANPO   2.96e-46   20-187   UBC-related  
tr|A7TSM8|A7TSM8_VANPO   6.82e-55   4-148   UBC-related  
 
Weak hits:
tr|A7TGJ3|A7TGJ3_VANPO   0.00629   6-50   UBC-related  
tr|A7TJ16|A7TJ16_VANPO   0.000192   467-530   RWD domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   151093 151093
No Yes Homo sapiens 76_38 Human 251 246
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 58 56
No Yes Gorilla gorilla 76_3.1 Western gorilla 65 64
No Yes Pongo abelii 76_2 Sumatran orangutan 58 57
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 57 55
No Yes Papio anubis 76 Olive baboon 63 60
No Yes Macaca mulatta 76_1 Rhesus monkey 85 84
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 115 113
No Yes Otolemur garnettii 76_3 Small-eared galago 64 63
No Yes Microcebus murinus 76_1 Gray mouse lemur 48 47
No Yes Rattus norvegicus 76_5.0 Norway rat 63 60
No Yes Mus musculus 76_38 House mouse 150 146
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 50 46
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 55 54
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 117 115
No Yes Cavia porcellus 76_3 Domestic guinea pig 60 58
No Yes Oryctolagus cuniculus 76_2 Rabbit 68 67
No Yes Ochotona princeps 76 American pika 47 45
No Yes Tupaia belangeri 76 Northern tree shrew 50 49
No Yes Sus scrofa 76_10.2 Pig 51 50
No Yes Bos taurus 76_3.1 Cattle 65 63
No Yes Ovis aries 76_3.1 Sheep 69 66
No Yes Vicugna pacos 76_1 Alpaca 37 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 50 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 54 53
No Yes Ailuropoda melanoleuca 76_1 Giant panda 52 52
No Yes Canis familiaris 76_3.1 Dog 71 70
No Yes Felis catus 76_6.2 Domestic cat 52 51
No Yes Equus caballus 76_2 Horse 52 51
No Yes Myotis lucifugus 76_2.0 Little brown bat 63 62
No Yes Pteropus vampyrus 76_1 Large flying fox 49 48
No Yes Sorex araneus 76_1 European shrew 42 41
No Yes Erinaceus europaeus 76 Western European hedgehog 47 44
No Yes Procavia capensis 76_1 Cape rock hyrax 48 46
No Yes Loxodonta africana 76_3 African savanna elephant 72 72
No Yes Echinops telfairi 76 Small Madagascar hedgehog 51 50
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 64 64
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 54 50
No Yes Macropus eugenii 76_1.0 Tammar wallaby 46 44
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 59 59
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 59 57
No Yes Ornithorhynchus anatinus 76_5 Platypus 49 49
No Yes Saccoglossus kowalevskii v3.0   82 77
No Yes Petromyzon marinus 76_7.0 Sea lamprey 33 32
No Yes Meleagris gallopavo 76_2 Turkey 49 49
No Yes Gallus gallus 76_4 Chicken 47 47
No Yes Anas platyrhynchos 76_1.0 Mallard 46 46
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 46 46
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 47 47
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 48 48
No Yes Anolis carolinensis 76_2.0 Green anole 47 47
No Yes Xenopus laevis African clawed frog 146 144
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 66 65
No Yes Latimeria chalumnae 76_1 Coelacanth 69 68
No Yes Lepisosteus oculatus 76 Spotted gar 63 61
No Yes Gadus morhua 76_1 Atlantic cod 67 64
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 61 59
No Yes Takifugu rubripes 76_4 Torafugu 96 89
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 78 76
No Yes Oryzias latipes 76_1 Japanese medaka 69 67
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 62 60
No Yes Poecilia formosa 76 Amazon molly 62 60
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 67 65
No Yes Astyanax mexicanus 76 Mexican tetra 66 64
No Yes Danio rerio 76_9 Zebrafish 101 98
No Yes Oikopleura dioica   43 43
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 35 35
No Yes Ciona intestinalis 76 Vase tunicate 35 35
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 60 58
No Yes Adineta vaga   175 174
No Yes Octopus bimaculoides 280   51 51
No Yes Crassostrea gigas 22 Pacific oyster 51 47
No Yes Lottia gigantea Owl limpet 50 50
No Yes Helobdella robusta   41 41
No Yes Capitella sp. I   56 55
No Yes Danaus plexippus OGS1.0 Monarch butterfly 35 35
No Yes Heliconius melpomene Postman butterfly 32 32
No Yes Bombyx mori Domestic silkworm 29 29
No Yes Nasonia vitripennis Jewel wasp 35 35
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 49 49
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 34 34
No Yes Linepithema humile v1.1 Argentine ant 36 36
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 34 34
No Yes Solenopsis invicta v.2.2.3 Red fire ant 33 32
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 34 34
No Yes Atta cephalotes v1.1   37 37
No Yes Camponotus floridanus v3.3 Florida carpenter ant 38 38
No Yes Lucilia cuprina Australian sheep blowfly 30 30
No Yes Drosophila grimshawi 1.3   45 44
No Yes Drosophila willistoni 1.3   44 43
No Yes Drosophila pseudoobscura 2.13   66 65
No Yes Drosophila persimilis 1.3   57 56
No Yes Drosophila suzukii   44 41
No Yes Drosophila yakuba 1.3   44 43
No Yes Drosophila simulans 1.3   46 44
No Yes Drosophila sechellia 1.3   46 44
No Yes Drosophila melanogaster 76_5 Fruit fly 84 82
No Yes Drosophila erecta 1.3   44 43
No Yes Drosophila ananassae 1.3   47 46
No Yes Drosophila virilis 1.2   47 46
No Yes Drosophila mojavensis 1.3   44 44
No Yes Megaselia scalaris 22   15 15
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 41 41
No Yes Culex pipiens quinquefasciatus Southern house mosquito 38 37
No Yes Anopheles darlingi 22 American malaria mosquito 22 22
No Yes Anopheles gambiae 49_3j African malaria mosquito 37 37
No Yes Tribolium castaneum 3.0 Red flour beetle 39 39
No Yes Pediculus humanus corporis (Early assembly) Human body louse 36 36
No Yes Acyrthosiphon pisum Pea aphid 39 39
No Yes Rhodnius prolixus 22   37 37
No Yes Daphnia pulex Common water flea 37 37
No Yes Strigamia maritima 22   41 39
No Yes Sarcoptes scabiei   27 27
No Yes Tetranychus urticae Two-spotted spider mite 37 37
No Yes Ixodes scapularis (Preliminary) Black-legged tick 39 37
No Yes Pristionchus pacificus   31 31
No Yes Meloidogyne incognita Southern root-knot nematode 60 60
No Yes Meloidogyne hapla   29 29
No Yes Onchocerca volvulus 22   36 35
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 39 39
No Yes Caenorhabditis japonica   28 28
No Yes Caenorhabditis brenneri   48 48
No Yes Caenorhabditis remanei   33 33
No Yes Caenorhabditis elegans 76_235 Roundworm 45 45
No Yes Caenorhabditis briggsae 2   35 35
No Yes Trichinella spiralis 22   30 29
No Yes Hymenolepis microstoma   40 40
No Yes Echinococcus multilocularis   38 38
No Yes Echinococcus granulosus   38 38
No Yes Taenia solium Pork tapeworm 42 42
No Yes Schistosoma mansoni   46 46
No Yes Mnemiopsis leidyi Sea walnut 32 32
No Yes Thelohanellus kitauei   14 14
No Yes Acropora digitifera v1.0   46 46
No Yes Nematostella vectensis 1.0 Starlet sea anemone 57 57
No Yes Hydra vulgaris   39 39
No Yes Amphimedon queenslandica   69 69
No Yes Trichoplax adhaerens   42 41
No Yes Proterospongia sp. ATCC 50818   44 44
No Yes Monosiga brevicollis   34 34
No Yes Sphaeroforma arctica JP610   26 26
No Yes Capsaspora owczarzaki ATCC 30864   32 32
No Yes Conidiobolus coronatus NRRL28638 v1.0   16 16
No Yes Mortierella verticillata NRRL 6337   30 29
No Yes Phycomyces blakesleeanus   27 27
No Yes Rhizopus oryzae RA 99-880   31 31
No Yes Mucor circinelloides   27 27
No Yes Rhizomucor miehei CAU432   25 25
No Yes Malassezia globosa CBS 7966   30 30
No Yes Sporisorium reilianum 22   22 22
No Yes Ustilago maydis   21 21
No Yes Mixia osmundae IAM 14324 v1.0   24 24
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   24 24
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   23 23
No Yes Melampsora laricis-populina   22 22
No Yes Rhodotorula graminis WP1 v1.0   23 23
No Yes Sporobolomyces roseus IAM 13481   19 19
No Yes Microbotryum violaceum 22   26 26
No Yes Wallemia sebi v1.0   20 20
No Yes Sphaerobolus stellatus v1.0   31 31
No Yes Piloderma croceum F 1598 v1.0   30 30
No Yes Serpula lacrymans var. lacrymans S7.9   24 24
No Yes Coniophora puteana   25 25
No Yes Hydnomerulius pinastri v2.0   26 26
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   24 24
No Yes Pisolithus microcarpus 441 v1.0   30 30
No Yes Pisolithus tinctorius Marx 270 v1.0   27 27
No Yes Scleroderma citrinum Foug A v1.0   26 26
No Yes Coprinopsis cinerea okayama7 130 v3   28 28
No Yes Pleurotus ostreatus Oyster mushroom 27 27
No Yes Amanita thiersii Skay4041 v1.0   25 25
No Yes Amanita muscaria Koide v1.0 Fly agaric 26 26
No Yes Galerina marginata v1.0   31 31
No Yes Hebeloma cylindrosporum h7 v2.0   29 29
No Yes Laccaria bicolor S238N-H82   27 27
No Yes Agaricus bisporus var. bisporus   24 24
No Yes Schizophyllum commune   28 28
No Yes Stereum hirsutum FP-91666 SS1 v1.0   27 27
No Yes Heterobasidion annosum   24 24
No Yes Gloeophyllum trabeumv1.0   27 27
No Yes Punctularia strigosozonata v1.0   24 24
No Yes Sebacina vermifera MAFF 305830 v1.0   29 29
No Yes Fomitiporia mediterranea v1.0   25 25
No Yes Tulasnella calospora AL13/4D v1.0   26 26
No Yes Postia placenta   41 41
No Yes Wolfiporia cocos MD-104 SS10 v1.0   27 27
No Yes Fomitopsis pinicolav1.0   27 27
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   26 26
No Yes Phanerochaete chrysosporium RP-78 2.1   23 23
No Yes Dichomitus squalens   26 26
No Yes Trametes versicolor v1.0   26 26
No Yes Tremella mesenterica Witches' butter 25 25
No Yes Daldinia eschscholzii EC12 v1.0   29 28
No Yes Apiospora montagnei NRRL 25634 v1.0   32 31
No Yes Magnaporthe poae ATCC 64411 22   24 23
No Yes Magnaporthe grisea 70-15   28 28
No Yes Podospora anserina   26 25
No Yes Sporotrichum thermophile ATCC 42464   29 28
No Yes Thielavia terrestris NRRL 8126   28 27
No Yes Chaetomium globosum CBS 148.51   28 27
No Yes Neurospora tetrasperma   25 24
No Yes Neurospora discreta FGSC 8579   24 23
No Yes Neurospora crassa OR74A   28 26
No Yes Cryphonectria parasitica Chestnut blight fungus 28 27
No Yes Verticillium albo-atrum VaMs.102   26 25
No Yes Verticillium dahliae VdLs.17   30 29
No Yes Acremonium alcalophilumv 1.0   27 26
No Yes Glomerella graminicola 22   30 29
No Yes Fusarium graminearum   28 27
No Yes Nectria haematococca mpVI   29 28
No Yes Fusarium oxysporum f. sp. lycopersici 4286   29 28
No Yes Fusarium verticillioides 7600   26 25
No Yes Trichoderma asperellum CBS 433.97 v1.0   27 26
No Yes Trichoderma atroviride   27 26
No Yes Trichoderma citrinoviride v1.0   27 26
No Yes Trichoderma reesei 1.2   28 27
No Yes Trichoderma virens Gv29-8   27 26
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   27 26
No Yes Trichoderma harzianum CBS 226.95 v1.0   27 26
No Yes Amorphotheca resinae v1.0 Creosote fungus 28 27
No Yes Botrytis cinerea B05.10   27 26
No Yes Sclerotinia sclerotiorum   29 29
No Yes Blumeria graminis 22   22 22
No Yes Didymella exigua CBS 183.55 v1.0   31 30
No Yes Leptosphaeria maculans 22   30 29
No Yes Setosphaeria turcica v1.0   34 33
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   31 30
No Yes Cochliobolus victoriae FI3 v1.0   32 31
No Yes Cochliobolus carbonum 26-R-13 v1.0   31 30
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 30 29
No Yes Alternaria brassicicola   32 31
No Yes Cochliobolus lunatus m118 v2.0   34 33
No Yes Pyrenophora teres f. teres 22   33 32
No Yes Pyrenophora tritici-repentis   30 29
No Yes Stagonospora nodorum   35 34
No Yes Mycosphaerella graminicola IPO323   34 33
No Yes Zasmidium cellare ATCC 36951 v1.0   33 32
No Yes Dothistroma septosporum   35 34
No Yes Septoria musiva v1.0   31 30
No Yes Mycosphaerella fijiensis CIRAD86   30 29
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   33 32
No Yes Paracoccidioides brasiliensis Pb18   26 25
No Yes Coccidioides posadasii RMSCC 3488   29 28
No Yes Coccidioides immitis RS   30 29
No Yes Ajellomyces dermatitidis SLH14081   28 27
No Yes Histoplasma capsulatum class NAmI strain WU24   27 25
No Yes Microsporum canis CBS 113480   28 27
No Yes Trichophyton equinum CBS 127.97   28 27
No Yes Trichophyton verrucosum HKI 0517   22 22
No Yes Arthroderma benhamiae CBS 112371   22 21
No Yes Trichophyton tonsurans CBS 112818   28 27
No Yes Trichophyton rubrum CBS 118892   29 28
No Yes Uncinocarpus reesii 1704   25 24
No Yes Aspergillus zonatus v1.0   29 28
No Yes Penicillium chrysogenum Wisconsin 54-1255   29 28
No Yes Penicillium chrysogenum v1.0   29 28
No Yes Aspergillus acidus v1.0   31 30
No Yes Aspergillus fumigatus Af293   29 28
No Yes Aspergillus brasiliensis v1.0   31 30
No Yes Aspergillus nidulans FGSC A4   30 29
No Yes Aspergillus sydowii v1.0   30 29
No Yes Aspergillus versicolor v1.0   30 29
No Yes Aspergillus glaucus   29 28
No Yes Aspergillus carbonarius ITEM 5010   31 30
No Yes Neosartorya fischeri NRRL 181   30 29
No Yes Aspergillus terreus NIH2624   29 28
No Yes Aspergillus tubingensis v1.0   31 30
No Yes Aspergillus wentii v1.0   31 30
No Yes Aspergillus oryzae RIB40   27 27
No Yes Aspergillus niger 22   30 29
No Yes Aspergillus niger ATCC 1015   21 21
No Yes Aspergillus flavus NRRL3357   26 25
No Yes Aspergillus clavatus NRRL 1   30 29
No Yes Penicillium marneffei ATCC 18224   35 35
No Yes Tuber melanosporum Mel28 22   27 26
No Yes Tuber melanosporum Vittad Perigord truffle 27 26
No Yes Hansenula polymorpha v2.0   19 19
No Yes Dekkera bruxellensis CBS 2499 v2.0   19 19
No Yes Pichia membranifaciensv1.0   19 19
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   19 19
No Yes Candida dubliniensis CD36   19 19
No Yes Candida tropicalis MYA-3404   20 19
No Yes Candida parapsilosis   18 18
No Yes Candida albicans SC5314   19 19
No Yes Lodderomyces elongisporus NRRL YB-4239   19 19
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   21 21
No Yes Pichia stipitis CBS 6054   19 19
No Yes Candida guilliermondii ATCC 6260   18 18
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   19 19
No Yes Debaromyces hansenii   19 19
No Yes Wickerhamomyces anomalus   23 23
No Yes Pichia pastoris GS115   19 19
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   16 16
No Yes Yarrowia lipolytica CLIB122   23 23
No Yes Candida lusitaniae ATCC 42720   18 18
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   19 19
No Yes Vanderwaltozyma polyspora DSM 70294   18 18
No Yes Candida glabrata CBS138   17 17
No Yes Kluyveromyces thermotolerans CBS 6340   19 19
No Yes Lachancea kluyveri   19 19
No Yes Kluyveromyces waltii   18 18
No Yes Ashbya gossypii ATCC 10895   17 17
No Yes Zygosaccharomyces rouxii   19 19
No Yes Saccharomyces mikatae MIT   18 18
No Yes Saccharomyces paradoxus MIT   19 19
No Yes Saccharomyces cerevisiae 76 Baker's yeast 19 19
No Yes Saccharomyces bayanus MIT   19 19
No Yes Kluyveromyces lactis   18 18
No Yes Schizosaccharomyces cryophilus OY26 22   18 18
No Yes Schizosaccharomyces octosporus yFS286   18 18
No Yes Schizosaccharomyces japonicus yFS275   19 19
No Yes Schizosaccharomyces pombe Fission yeast 19 19
No Yes Catenaria anguillulae PL171 v1.0   35 33
No Yes Allomyces macrogynus ATCC 38327   57 54
No Yes Spizellomyces punctatus DAOM BR117   34 33
No Yes Dictyostelium discoideum   38 37
No Yes Dictyostelium purpureum   39 38
No Yes Entamoeba dispar 1.2   26 26
No Yes Entamoeba invadens 1.2   22 22
No Yes Entamoeba histolytica 1   26 26
No Yes Selaginella moellendorffii   73 73
No Yes Pinus taeda Loblolly pine 126 114
No Yes Picea abies Norway spruce 41 40
No Yes Eucalyptus grandis v201 Rose gum 87 87
No Yes Theobroma cacao B97-61/B2 v1 Cacao 54 54
No Yes Gossypium raimondii v221   296 290
No Yes Citrus clementina v165   113 113
No Yes Citrus sinensis v154 Sweet orange 138 138
No Yes Thellungiella halophila v173   176 176
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 108 108
No Yes Capsella rubella v183   66 66
No Yes Arabidopsis lyrata Lyrate rockcress 64 64
No Yes Arabidopsis thaliana 10 Thale cress 94 94
No Yes Carica papaya Papaya 43 43
No Yes Medicago truncatula Barrel medic 109 108
No Yes Phaseolus vulgaris v186 French bean 61 61
No Yes Glycine max v109 Soybean 178 178
No Yes Cucumis sativus v122 Cucumber 73 73
No Yes Fragaria vesca Wild strawberry 63 63
No Yes Malus domestica v196 Apple 149 146
No Yes Prunus persica v139 Peach 72 71
No Yes Linum usitatissimum v200 Flax 85 85
No Yes Manihot esculenta v147 Cassava 98 98
No Yes Populus trichocarpa v156 Black cottonwood 104 104
No Yes Vitis vinifera Wine grape 49 49
No Yes Mimulus guttatus v140 Spotted monkey flower 71 71
No Yes Solanum lycopersicum v.2.3 Tomato 69 68
No Yes Solanum tuberosum Potato 103 102
No Yes Actinidia chinensis Hongyang   83 81
No Yes Aquilegia coerulea v195   80 80
No Yes Triticum urartu 22   56 56
No Yes Triticum aestivum 22 Bread wheat 210 210
No Yes Aegilops tauschii 22   73 70
No Yes Brachypodium distachyon Stiff brome 86 86
No Yes Oryza barthii 22 African wild rice 96 84
No Yes Oryza meridionalis 22   76 69
No Yes Oryza glumaepatula 22   87 76
No Yes Oryza glaberrima African rice 49 49
No Yes Oryza punctata 22   79 74
No Yes Oryza nivara 22   87 84
No Yes Oryza brachyantha 22 Malo sina 55 55
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 95 95
No Yes Oryza sativa v193 Rice 95 95
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 83 80
No Yes Panicum virgatum v202 Switchgrass 163 163
No Yes Setaria italica v164 Foxtail millet 87 87
No Yes Zea mays subsp. mays Maize 187 187
No Yes Zea mays v181 Maize 216 215
No Yes Sorghum bicolor Sorghum 59 56
No Yes Musa balbisiana Balbis banana 86 82
No Yes Musa acuminata 22 Wild Malaysian banana 100 99
No Yes Amborella trichopoda 22   45 45
No Yes Physcomitrella patens   49 49
No Yes Coccomyxa subellipsoidea sp. C-169 v2   30 29
No Yes Asterochloris sp. Cgr/DA1pho v1.0   22 22
No Yes Chlorella variabilis sp. NC64A   32 31
No Yes Chlorella vulgaris   30 29
No Yes Volvox carteri f. nagariensis   26 26
No Yes Volvox carteri v199   26 26
No Yes Chlamydomonas reinhardtii 4.0   28 28
No Yes Ostreococcus sp. RCC809   22 22
No Yes Ostreococcus lucimarinus CCE9901   18 18
No Yes Ostreococcus tauri   22 22
No Yes Bathycoccus prasinos   23 22
No Yes Micromonas sp. RCC299   24 23
No Yes Micromonas pusilla CCMP1545 v3.0   26 26
No Yes Cyanidioschyzon merolae strain 10D 22   19 19
No Yes Cyanidioschyzon merolae   20 20
No Yes Porphyridium purpureum 02_2012   23 23
No Yes Thecamonas trahens ATCC 50062   37 36
No Yes Bigelowiella natans CCMP2755 22   46 46
No Yes Giardia lamblia 2.3   13 13
No Yes Cyanophora paradoxa   27 27
No Yes Leishmania mexicana 2.4   21 21
No Yes Leishmania major strain Friedlin   20 20
No Yes Leishmania infantum JPCM5 2.4   20 20
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   24 24
No Yes Trypanosoma vivax   20 20
No Yes Trypanosoma cruzi strain CL Brener   26 26
No Yes Trypanosoma congolense 2.4   22 22
No Yes Trypanosoma brucei gambiense v4.1   20 20
No Yes Trypanosoma brucei TREU927 v4.1   21 21
No Yes Ectocarpus siliculosus   41 40
No Yes Aureococcus anophagefferens   27 27
No Yes Albugo laibachii 22   24 24
No Yes Pythium iwayamai DAOM BR242034 22   31 30
No Yes Pythium arrhenomanes ATCC 12531 22   28 28
No Yes Pythium ultimum v1.7-2   27 27
No Yes Pythium aphanidermatum DAOM BR444 22   26 26
No Yes Pythium irregulare DAOM BR486 22   27 27
No Yes Pythium vexans DAOM BR484 22   28 27
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 26 26
No Yes Phytophthora sojae 1.1   25 25
No Yes Phytophthora infestans T30-4   28 28
No Yes Phytophthora capsici   22 22
No Yes Hyaloperonospora arabidopsidis 22   25 25
No Yes Phaeodactylum tricornutumCCAP 1055/1   23 23
No Yes Fragilariopsis cylindrus   43 43
No Yes Thalassiosira pseudonana CCMP1335   25 25
No Yes Perkinsus marinus ATCC 50983   52 51
No Yes Paramecium tetraurelia   82 82
No Yes Tetrahymena thermophila SB210 1   50 50
No Yes Ichthyophthirius multifiliis strain G5   30 30
No Yes Cryptosporidium hominis   9 9
No Yes Cryptosporidium muris   18 18
No Yes Cryptosporidium parvum Iowa II   17 17
No Yes Neospora caninum   20 20
No Yes Toxoplasma gondii VEG   21 21
No Yes Toxoplasma gondii ME49   21 21
No Yes Toxoplasma gondii GT1   21 21
No Yes Babesia bovis T2Bo   34 34
No Yes Theileria parva   14 14
No Yes Theileria annulata   15 15
No Yes Plasmodium falciparum 3D7   18 18
No Yes Plasmodium vivax SaI-1 7.0   17 17
No Yes Plasmodium knowlesi strain H   17 17
No Yes Plasmodium yoelii ssp. yoelii 1   16 16
No Yes Plasmodium chabaudi   17 17
No Yes Plasmodium berghei ANKA   17 17
No Yes Symbiodinium minutum clade B1 v1.2   70 68
No Yes Naegleria gruberi   40 40
No Yes Trichomonas vaginalis   48 48
No Yes Guillardia theta CCMP2712 v1.0   41 40
No Yes Emiliania huxleyi CCMP1516   76 73
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Streptomyces scabiei 87.22   2 2
No Yes Actinoplanes missouriensis 431   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Pirellula staleyi DSM 6068   2 2
No Yes Turneriella parva DSM 21527   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfomicrobium baculatum DSM 4028   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 138 135
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 63 61
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 39 39
No Yes Ascaris suum Victoria/Ghent Pig roundworm 40 40
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 38 38
No Yes Cryptococcus neoformans var. grubii H99   25 25
No Yes Cryptococcus neoformans B-3501A   24 24
No Yes Cryptococcus neoformans JEC21   23 23
No Yes Paracoccidioides brasiliensis Pb01   26 25
No Yes Paracoccidioides brasiliensis Pb03   25 23
No Yes Coccidioides posadasii str. Silveira   29 28
No Yes Coccidioides immitis RMSCC 3703   27 26
No Yes Coccidioides immitis RMSCC 2394   29 28
No Yes Coccidioides immitis H538.4   28 28
No Yes Ajellomyces dermatitidis ER-3   28 27
No Yes Histoplasma capsulatum H143   26 24
No Yes Histoplasma capsulatum H88   27 25
No Yes Histoplasma capsulatum G186AR   29 27
No Yes Aspergillus fumigatus A1163   30 29
No Yes Candida albicans WO-1   17 17
No Yes Saccharomyces cerevisiae UC5   17 17
No Yes Saccharomyces cerevisiae PW5   18 18
No Yes Saccharomyces cerevisiae FL100   11 11
No Yes Saccharomyces cerevisiae CLIB382   4 4
No Yes Saccharomyces cerevisiae CLIB324   11 11
No Yes Saccharomyces cerevisiae CBS7960   16 16
No Yes Saccharomyces cerevisiae YJM269   17 17
No Yes Saccharomyces cerevisiae T7   20 20
No Yes Saccharomyces cerevisiae FostersB   15 15
No Yes Saccharomyces cerevisiae FostersO   17 17
No Yes Saccharomyces cerevisiae VL3   19 19
No Yes Saccharomyces cerevisiae Vin13   17 17
No Yes Saccharomyces cerevisiae LalvinQA23   18 18
No Yes Saccharomyces cerevisiae AWRI796   19 19
No Yes Saccharomyces cerevisiae Sigma1278b   19 19
No Yes Saccharomyces cerevisiae W303   19 19
No Yes Saccharomyces cerevisiae JAY291   19 19
No Yes Saccharomyces cerevisiae AWRI1631   15 15
No Yes Saccharomyces cerevisiae YPS163   8 8
No Yes Saccharomyces cerevisiae M22   9 9
No Yes Saccharomyces cerevisiae T73   7 7
No Yes Saccharomyces cerevisiae CLIB215   18 18
No Yes Saccharomyces cerevisiae Y10   10 10
No Yes Saccharomyces cerevisiae YJM789   20 20
No Yes Saccharomyces cerevisiae YJM789   20 20
No Yes Saccharomyces cerevisiae RM11-1a   20 20
No Yes Saccharomyces cerevisiae RM11-1a   20 20
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 19 19
No Yes Schizosaccharomyces pombe 972h-   19 19
No Yes Batrachochytrium dendrobatidis JEL423   29 29
No Yes Batrachochytrium dendrobatidis JAM81   26 26
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 52 51
No Yes Hordeum vulgare 22 Domesticated barley 71 71
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 60 60
No Yes Trypanosoma brucei Lister 427 v4.1   20 20
No Yes Neospora caninum Nc-Liverpool 6.2   20 20
No Yes Plasmodium falciparum HB3   16 16
No Yes Plasmodium falciparum Dd2   9 9
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Enterococcus faecium Aus0085   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 265 259
No Yes Homo sapiens (NCBI version) Human 101 99
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 67 64
No Yes Heliconius numata (Incomplete)   25 25
No Yes Loa loa v3.3 (Request) Eye worm 38 37
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 41 41
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 31
No Yes Moniliophthora perniciosa FA553 (Genome survey)   15 15
No Yes Encephalitozoon intestinalis (endoparasite)   9 9
No Yes Encephalitozoon cuniculi (endoparasite)   8 8
No Yes Picea sitchensis (Incomplete) Sitka spruce 16 16
No Yes Lotus japonicus (Early assembly)   57 57
No Yes Malus x domestica (Duplicate) Apple 149 146
No Yes Ricinus communis (Early assembly) Castor bean 47 47
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   130 124
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 68 67
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 69 68
No Yes Phoenix dactylifera (Early draft) Date palm 55 55
No Yes Guillardia theta (nucleomorph)   3 3
No Yes Homo sapiens 69_37 Human 59 57
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 56 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 55 54
No Yes Pongo abelii 69_2 Sumatran orangutan 57 56
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 53 51
No Yes Macaca mulatta 69_1 Rhesus monkey 61 60
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 57 56
No Yes Otolemur garnettii 69_3 Small-eared galago 63 62
No Yes Microcebus murinus 69_1 Gray mouse lemur 48 47
No Yes Rattus norvegicus 69_3.4 Norway rat 64 61
No Yes Mus musculus 69_38 House mouse 65 62
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 50 46
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 53 52
No Yes Cavia porcellus 69_3 Domestic guinea pig 60 58
No Yes Oryctolagus cuniculus 69_2 Rabbit 66 65
No Yes Ochotona princeps 69 American pika 47 45
No Yes Tupaia belangeri 69 Northern tree shrew 50 49
No Yes Sus scrofa 69_10.2 Pig 49 48
No Yes Bos taurus 69_3.1 Cattle 64 62
No Yes Vicugna pacos 69_1 Alpaca 37 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 50 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 54 53
No Yes Ailuropoda melanoleuca 69_1 Giant panda 49 49
No Yes Canis familiaris 69_3.1 Dog 65 64
No Yes Felis catus 69 Domestic cat 39 39
No Yes Equus caballus 69_2 Horse 50 49
No Yes Myotis lucifugus 69_2.0 Little brown bat 61 60
No Yes Pteropus vampyrus 69_1 Large flying fox 49 48
No Yes Sorex araneus 69_1 European shrew 42 41
No Yes Erinaceus europaeus 69 Western European hedgehog 47 44
No Yes Procavia capensis 69_1 Cape rock hyrax 48 46
No Yes Loxodonta africana 69_3 African savanna elephant 59 59
No Yes Echinops telfairi 69 Small Madagascar hedgehog 51 50
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 46 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 54 50
No Yes Macropus eugenii 69_1.0 Tammar wallaby 46 44
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 52 52
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 53 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 48 48
No Yes Petromyzon marinus 69_7.0 Sea lamprey 31 30
No Yes Meleagris gallopavo 69_2 Turkey 45 45
No Yes Gallus gallus 69_2 Chicken 42 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 45 45
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 45 45
No Yes Anolis carolinensis 69_2.0 Green anole 42 42
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 54 53
No Yes Latimeria chalumnae 69_1 Coelacanth 52 51
No Yes Gadus morhua 69_1 Atlantic cod 65 62
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 59 57
No Yes Takifugu rubripes 69_4 Torafugu 54 52
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 59 57
No Yes Oryzias latipes 69_1 Japanese medaka 54 52
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 62 60
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 61 59
No Yes Danio rerio 69_9 Zebrafish 65 63
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 30 30
No Yes Ciona intestinalis 69 Vase tunicate 35 35
No Yes Drosophila melanogaster 69_5 Fruit fly 43 42
No Yes Caenorhabditis elegans 69_215 Roundworm 35 35
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 19 19
No Yes Arabidopsis thaliana 10 Thale cress 57 57
No Yes 2_050719S (meta-genome)   2 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Core Eukaryotic Genes 458 (CEGMA)   30 30
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   47881 47090
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   718 718
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   4465 4398
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   56727 55734
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   353 352
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes NCBI viral sequences (Viral)   28 24
No Yes PDB chains (SCOP 1.75) (PDB)   68 68
No Yes Protein Data Bank (all PDB sequenc)   464 464
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1163 1163
No Yes TargetDB (Targets)   204 199
No Yes UniProt viral sequences (Viral)   13 12

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