SUPERFAMILY 1.75 HMM library and genome assignments server

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YcfA/nrd intein domain superfamily domain assignments
in
Brachybacterium faecium DSM 4810


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Select to display   Genome       Domains   Proteins
No Yes ALL   73520 73520
No Yes Dictyostelium discoideum   1 1
No Yes Acaryochloris marina MBIC11017   4 4
No Yes Synechocystis sp. PCC 6803   2 2
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   5 5
No Yes Synechococcus elongatus PCC 7942   2 2
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Cyanothece sp. PCC 8802   13 13
No Yes Gloeocapsa sp. PCC 7428   4 4
No Yes Halothece sp. PCC 7418   11 11
No Yes Microcystis aeruginosa NIES-843   26 26
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   5 5
No Yes Anabaena variabilis ATCC 29413   2 2
No Yes Nostoc sp. PCC 7107   5 5
No Yes Nostoc punctiforme PCC 73102   5 5
No Yes Nostoc sp. PCC 7120   2 2
No Yes Nostoc sp. PCC 7524   5 5
No Yes Anabaena sp. 90   18 18
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Eggerthella sp. YY7918   1 1
No Yes Eggerthella lenta DSM 2243   2 2
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Frankia sp. EAN1pec   2 2
No Yes Frankia alni ACN14a   2 2
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Propionibacterium acnes SK137   1 1
No Yes Salinispora arenicola CNS-205   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   2 2
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   6 6
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   2 2
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Meiothermus silvanus DSM 9946   2 2
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Thermus scotoductus SA-01   4 4
No Yes Thermus thermophilus HB27   4 4
No Yes Finegoldia magna ATCC 29328   2 2
No Yes Veillonella parvula DSM 2008   1 1
No Yes Megasphaera elsdenii DSM 20460   1 1
No Yes Acidaminococcus fermentans DSM 20731   1 1
No Yes Selenomonas sputigena ATCC 35185   2 2
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Candidatus Desulforudis audaxviator MP104C   2 2
No Yes Thermincola potens JR   2 2
No Yes Pelotomaculum thermopropionicum SI   1 1
No Yes Desulfosporosinus acidiphilus SJ4   1 1
No Yes Desulfosporosinus orientis DSM 765   2 2
No Yes Syntrophobotulus glycolicus DSM 8271   3 3
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   2 2
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   2 2
No Yes Desulfotomaculum kuznetsovii DSM 6115   3 3
No Yes Eubacterium limosum KIST612   4 4
No Yes [Ruminococcus] obeum   1 1
No Yes Eubacterium rectale M104/1   2 2
No Yes Eubacterium rectale ATCC 33656   2 2
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   3 3
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   6 6
No Yes Heliobacterium modesticaldum Ice1   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   4 4
No Yes Caldicellulosiruptor obsidiansis OB47   2 2
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   4 4
No Yes Caldicellulosiruptor bescii DSM 6725   2 2
No Yes Thermoanaerobacterium xylanolyticum LX-11   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   3 3
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   1 1
No Yes Moorella thermoacetica ATCC 39073   3 3
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   1 1
No Yes Thermoanaerobacter italicus Ab9   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   2 2
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Tetragenococcus halophilus NBRC 12172   2 2
No Yes Enterococcus faecalis 62   1 1
No Yes Weissella koreensis KACC 15510   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365   1 1
No Yes Lactobacillus buchneri NRRL B-30929   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   2 2
No Yes Streptococcus equi subsp. equi 4047   1 1
No Yes Streptococcus infantarius subsp. infantarius CJ18   1 1
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus pyogenes str. Manfredo   1 1
No Yes Streptococcus mutans NN2025   1 1
No Yes Kyrpidia tusciae DSM 2912   5 5
No Yes Bacillus atrophaeus 1942   2 2
No Yes Ignavibacterium album JCM 16511   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   1 1
No Yes Bacteroides sp. CF50   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Solitalea canadensis DSM 3403   2 2
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Waddlia chondrophila WSU 86-1044   2 2
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Anaerobaculum mobile DSM 13181   3 3
No Yes Turneriella parva DSM 21527   2 2
No Yes Brachyspira murdochii DSM 12563   1 1
No Yes Brachyspira pilosicoli 95/1000   2 2
No Yes Brachyspira hyodysenteriae WA1   2 2
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Spirochaeta caldaria DSM 7334   3 3
No Yes Treponema azotonutricium ZAS-9   2 2
No Yes Treponema primitia ZAS-2   4 4
No Yes Treponema denticola ATCC 35405   6 6
No Yes Thermodesulfatator indicus DSM 15286   3 3
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Petrotoga mobilis SJ95   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Thermotoga sp. RQ2   1 1
No Yes Thermotoga naphthophila RKU-10   1 1
No Yes Thermotoga petrophila RKU-1   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Caldisericum exile AZM16c01   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   5 5
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   3 3
No Yes Thermodesulfovibrio yellowstonii DSM 11347   3 3
No Yes Candidatus Nitrospira defluvii   2 2
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Leptotrichia buccalis C-1013-b   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Candidatus Methylomirabilis oxyfera   7 7
No Yes Acidithiobacillus ferrivorans SS3   3 3
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Arcobacter butzleri RM4018   1 1
No Yes Campylobacter hominis ATCC BAA-381   1 1
No Yes Campylobacter curvus 525.92   1 1
No Yes Campylobacter concisus 13826   1 1
No Yes Campylobacter jejuni subsp. doylei 269.97   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Helicobacter pylori B38   5 5
No Yes Desulfobacca acetoxidans DSM 11109   3 3
No Yes Desulfomonile tiedjei DSM 6799   2 2
No Yes Desulfurivibrio alkaliphilus AHT2   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio magneticus RS-1   2 2
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter uraniireducens Rf4   4 4
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Babela massiliensis   1 1
No Yes Neisseria gonorrhoeae NCCP11945   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Ralstonia eutropha H16   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Pusillimonas sp. T7-7   2 2
No Yes Advenella kashmirensis WT001   1 1
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   2 2
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Nitrosomonas sp. Is79A3   3 3
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans 621H   1 1
No Yes Micavibrio aeruginosavorus ARL-13   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Rickettsia philipii str. 364D   1 1
No Yes Rickettsia heilongjiangensis 054   1 1
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Rickettsia parkeri str. Portsmouth   1 1
No Yes Rickettsia montanensis str. OSU 85-930   1 1
No Yes Candidatus Rickettsia amblyommii str. GAT-30V   1 1
No Yes Rickettsia akari str. Hartford   1 1
No Yes Rickettsia rickettsii str. 'Sheila Smith'   1 1
No Yes Rickettsia conorii str. Malish 7   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   2 2
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Rhodopseudomonas palustris BisA53   2 2
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   4 4
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   2 2
No Yes Haemophilus somnus 129PT   2 2
No Yes Gallibacterium anatis UMN179   1 1
No Yes Haemophilus parasuis SH0165   2 2
No Yes Haemophilus ducreyi 35000HP   1 1
No Yes Haemophilus influenzae PittEE   2 2
No Yes Oceanimonas sp. GK1   1 1
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylomicrobium alcaliphilum   2 2
No Yes Methylomonas methanica MC09   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   2 2
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   5 5
No Yes Nitrosococcus watsonii C-113   8 8
No Yes Nitrosococcus halophilus Nc4   13 13
No Yes Nitrosococcus oceani ATCC 19707   4 4
No Yes Photorhabdus asymbiotica   2 2
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 2
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Rahnella sp. Y9602   2 2
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   2 2
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Dickeya dadantii Ech703   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Cronobacter sakazakii ES15   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Klebsiella oxytoca E718   2 2
No Yes Enterobacter aerogenes KCTC 2190   2 2
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Pseudomonas sp. TKP   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanosaeta harundinacea 6Ac   6 6
No Yes Methanosaeta concilii GP6   11 11
No Yes Methanosarcina acetivorans C2A   3 3
No Yes Methanosarcina mazei Go1   4 4
No Yes Methanosarcina barkeri str. Fusaro   3 3
No Yes Methanosphaerula palustris E1-9c   3 3
No Yes Methanoregula boonei 6A8   3 3
No Yes Methanospirillum hungatei JF-1   8 8
No Yes Methanoplanus petrolearius DSM 11571   3 3
No Yes Methanoculleus bourgensis MS2   3 3
No Yes Methanoculleus marisnigri JR1   3 3
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   4 4
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus kodakarensis KOD1   3 3
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   2 2
No Yes Natrinema sp. J7-2   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Haloferax volcanii DS2   2 2
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   2 2
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes methanocaldococcus infernus ME   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   5 5
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   2 2
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   2 2
No Yes Synechocystis sp. PCC 6803 substr. GT-I   2 2
No Yes Synechocystis sp. PCC 6803   2 2
No Yes Cyanobium gracile PCC 6307   2 2
No Yes Dactylococcopsis salina PCC 8305   12 12
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. PCC 7002   2 2
No Yes Synechococcus elongatus PCC 6301   2 2
No Yes Crinalium epipsammum PCC 9333   10 10
No Yes Oscillatoria nigro-viridis PCC 7112   6 6
No Yes Oscillatoria acuminata PCC 6304   2 2
No Yes Arthrospira platensis NIES-39   5 5
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   8 8
No Yes Cyanothece sp. PCC 7424   4 4
No Yes Cyanothece sp. ATCC 51142   9 9
No Yes Cyanothece sp. PCC 8801   11 11
No Yes Cyanobacterium aponinum PCC 10605   5 5
No Yes Cyanobacterium stanieri PCC 7202   4 4
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   11 11
No Yes Calothrix parietina Calothrix sp. PCC 6303   2 2
No Yes Cylindrospermum stagnale PCC 7417   9 9
No Yes Anabaena cylindrica PCC 7122   5 5
No Yes Gordonibacter pamelaeae 7-10-1-b   2 2
No Yes Frankia sp. CcI3   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn31   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn17   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn33   1 1
No Yes Propionibacterium acnes C1   1 1
No Yes Propionibacterium acnes HL096PA1   1 1
No Yes Propionibacterium acnes 6609   1 1
No Yes Propionibacterium acnes 266   1 1
No Yes Propionibacterium acnes KPA171202   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Corynebacterium callunae DSM 20147   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Gardnerella vaginalis HMP9231   1 1
No Yes Gardnerella vaginalis ATCC 14019   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes Thermus oshimai JL-2   5 5
No Yes Thermus thermophilus JL-18   4 4
No Yes Thermus thermophilus SG0.5JP17-16   5 5
No Yes Thermus thermophilus HB8   2 2
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   6 6
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium sp. SY8519   1 1
No Yes Clostridium kluyveri NBRC 12016   2 2
No Yes Clostridium perfringens str. 13   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   4 4
No Yes Thermacetogenium phaeum DSM 12270   2 2
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Enterococcus mundtii QU 25   3 3
No Yes Enterococcus faecium Aus0085   1 1
No Yes Lactobacillus reuteri I5007   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842   1 1
No Yes Streptococcus anginosus C238   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   2 2
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   2 2
No Yes Streptococcus lutetiensis 033   2 2
No Yes Streptococcus pyogenes HSC5   1 1
No Yes Streptococcus pyogenes MGAS10750   1 1
No Yes Streptococcus pyogenes MGAS10270   1 1
No Yes Streptococcus pyogenes MGAS9429   1 1
No Yes Streptococcus pyogenes MGAS8232   1 1
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae SPNA45   1 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae AP200   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus pneumoniae R6   1 1
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus mutans GS-5   1 1
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus suis T15   1 1
No Yes Streptococcus suis TL13   1 1
No Yes Streptococcus suis D12   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Chlorobium phaeobacteroides BS1   3 3
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Brachyspira pilosicoli WesB   1 1
No Yes Brachyspira pilosicoli B2904   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Leptospirillum ferriphilum ML-04   2 2
No Yes Fusobacterium nucleatum subsp. animalis 4_8   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Campylobacter jejuni subsp. jejuni S3   1 1
No Yes Campylobacter jejuni subsp. jejuni 81-176   2 2
No Yes Campylobacter coli CVM N29710   1 1
No Yes Helicobacter pylori Gambia94/24   1 1
No Yes Helicobacter pylori 2017   1 1
No Yes Helicobacter pylori 2018   1 1
No Yes Helicobacter pylori 908   1 1
No Yes Helicobacter pylori B8   1 1
No Yes Helicobacter pylori HPAG1   1 1
No Yes Helicobacter pylori J99   1 1
No Yes Desulfobacula toluolica Tol2   3 3
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   2 2
No Yes Geobacter sp. M18   2 2
No Yes Neisseria gonorrhoeae FA 1090   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   1 1
No Yes Alicycliphilus denitrificans BC   2 2
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   2 2
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   2 2
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Micavibrio aeruginosavorus EPB   1 1
No Yes Rickettsia slovaca str. D-CWPP   1 1
No Yes Rickettsia rickettsii str. Arizona   1 1
No Yes Rickettsia rickettsii str. Brazil   1 1
No Yes Rickettsia rickettsii str. Hauke   1 1
No Yes Rickettsia rickettsii str. Colombia   1 1
No Yes Rickettsia rickettsii str. Hlp#2   1 1
No Yes Rickettsia rickettsii str. Hino   1 1
No Yes Rickettsia rickettsii str. Iowa   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   2 2
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhodopseudomonas palustris DX-1   3 3
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   5 5
No Yes Rhodopseudomonas palustris BisB18   2 2
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   2 2
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Haemophilus somnus 2336   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   2 2
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   2 2
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Haemophilus parasuis ZJ0906   3 3
No Yes Haemophilus influenzae F3047   1 1
No Yes Haemophilus influenzae 86-028NP   2 2
No Yes Haemophilus influenzae R2866   2 2
No Yes Haemophilus influenzae R2846   1 1
No Yes Actinobacillus suis H91-0380   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   5 5
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   3 3
No Yes Yersinia pestis A1122   3 3
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   3 3
No Yes Yersinia pestis Nepal516   3 3
No Yes Yersinia pestis Antiqua   3 3
No Yes Yersinia pestis Angola   2 2
No Yes Yersinia pestis CO92   3 3
No Yes Yersinia pestis KIM10+   2 2
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   2 2
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   3 3
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   2 2
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   3 3
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   5 5
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   2 2
No Yes Escherichia coli O104:H4 str. 2009EL-2071   2 2
No Yes Escherichia coli O104:H4 str. 2011C-3493   3 3
No Yes Escherichia coli NA114   4 4
No Yes Escherichia coli str. 'clone D i2'   2 2
No Yes Escherichia coli str. 'clone D i14'   2 2
No Yes Escherichia coli UM146   2 2
No Yes Escherichia coli 042   6 6
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli UMNK88   2 2
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli ED1a   2 2
No Yes Escherichia coli IAI39   2 2
No Yes Escherichia coli UMN026   4 4
No Yes Escherichia coli 55989   2 2
No Yes Escherichia coli S88   4 4
No Yes Escherichia coli W   2 2
No Yes Escherichia coli W   2 2
No Yes Escherichia coli DH1   2 2
No Yes Escherichia coli DH1   2 2
No Yes Escherichia coli ATCC 8739   2 2
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   3 3
No Yes Escherichia coli SE15   2 2
No Yes Escherichia coli SE11   3 3
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli UTI89   2 2
No Yes Escherichia coli 536   2 2
No Yes Escherichia coli ETEC H10407   4 4
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   3 3
No Yes Escherichia coli CFT073   4 4
No Yes Escherichia coli O111:H- str. 11128   2 2
No Yes Escherichia coli O157:H7 str. TW14359   2 2
No Yes Escherichia coli O157:H7 str. EC4115   2 2
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   2 2
No Yes Escherichia coli str. K-12 substr. MG1655   2 2
No Yes Escherichia coli str. K-12 substr. W3110   2 2
No Yes Escherichia coli str. K-12 substr. DH10B   2 2
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Pseudomonas putida NBRC 14164   2 2
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   2 2
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   2 2
No Yes Pseudomonas fluorescens R124   3 3
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas resinovorans NBRC 106553   2 2
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   2 2
No Yes Acinetobacter baumannii SDF   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Methanomethylovorans hollandica DSM 15978   3 3
No Yes Methanolobus psychrophilus R15   4 4
No Yes Methanosarcina mazei Tuc01   3 3
No Yes Methanoregula formicica Methanoregula formicicum SMSP   3 3
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Thermococcus sp. AM4   3 3
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus furiosus DSM 3638   2 2
No Yes Halovivax ruber XH-70   2 2
No Yes Halorhabdus tiamatea SARL4B   2 2
No Yes Natronomonas moolapensis 8.8.11   2 2
No Yes Haloarcula hispanica N601   1 1
No Yes 1_050719N (meta-genome)   6 6
No Yes 2_050719S (meta-genome)   22 22
No Yes 3_050719R (meta-genome)   26 26
No Yes 4_050719Q (meta-genome)   12 12
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   14 14
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   4 4
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   6 6
No Yes Combined (meta-genome)   12 12
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   13 13
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   6 6
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   6 6
No Yes Dump bottom (Dump bottom) (meta-genome)   21 21
No Yes Dump top (Dump top) (meta-genome)   11 11
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   12 12
No Yes Fungus garden combined (combined) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   15 15
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   13 13
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   3 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   17 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   20 20
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   6 6
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   7 7
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   55 55
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   20 20
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   17 17
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   6 6
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   12 12
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   10 10
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   7 7
No Yes NCBI 2017_08 genome   57296 57296
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   15 15
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   6 6
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   9 9
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   6 6
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   4 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   46 46
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   15 15
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   12 12
No Yes STRING v9.0.5 (STRING)   472 472
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   19 19
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   12489 12489
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   34 34
No Yes Global Ocean Sampling Expedition (GOS)   112 112
No Yes NCBI plasmid sequences (Plasmids)   222 222
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   13 13
No Yes TargetDB (Targets)   11 11
No Yes The Salmonella enterica Pan-genome (meta-genome)   16 16
No Yes UniProt viral sequences (Viral)   3 3

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