SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

  Home > Genomes > Eukaryotic type KH-domain (KH-domain type I) domains in all bacterial genomes


Eukaryotic type KH-domain (KH-domain type I) family domain assignments
in
all bacterial genomes


No domain assignments for these genomes.

Add assignments from groups of genomes

View all assignments containing a Eukaryotic type KH-domain (KH-domain type I) domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   62784 62784
No Yes Homo sapiens 76_38 Human 191 123
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 38 20
No Yes Gorilla gorilla 76_3.1 Western gorilla 63 33
No Yes Pongo abelii 76_2 Sumatran orangutan 44 25
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 41 23
No Yes Papio anubis 76 Olive baboon 43 25
No Yes Macaca mulatta 76_1 Rhesus monkey 75 48
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 111 61
No Yes Otolemur garnettii 76_3 Small-eared galago 42 25
No Yes Microcebus murinus 76_1 Gray mouse lemur 26 14
No Yes Rattus norvegicus 76_5.0 Norway rat 47 30
No Yes Mus musculus 76_38 House mouse 97 57
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 28 17
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 37 21
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 46 26
No Yes Cavia porcellus 76_3 Domestic guinea pig 47 24
No Yes Oryctolagus cuniculus 76_2 Rabbit 50 29
No Yes Ochotona princeps 76 American pika 34 18
No Yes Tupaia belangeri 76 Northern tree shrew 21 17
No Yes Sus scrofa 76_10.2 Pig 50 32
No Yes Bos taurus 76_3.1 Cattle 43 26
No Yes Ovis aries 76_3.1 Sheep 50 29
No Yes Vicugna pacos 76_1 Alpaca 22 14
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 34 20
No Yes Mustela putorius furo 76_1.0 Domestic ferret 40 23
No Yes Ailuropoda melanoleuca 76_1 Giant panda 43 24
No Yes Canis familiaris 76_3.1 Dog 70 38
No Yes Felis catus 76_6.2 Domestic cat 39 23
No Yes Equus caballus 76_2 Horse 40 22
No Yes Myotis lucifugus 76_2.0 Little brown bat 41 23
No Yes Pteropus vampyrus 76_1 Large flying fox 33 18
No Yes Sorex araneus 76_1 European shrew 15 10
No Yes Erinaceus europaeus 76 Western European hedgehog 22 13
No Yes Procavia capensis 76_1 Cape rock hyrax 25 14
No Yes Loxodonta africana 76_3 African savanna elephant 67 38
No Yes Echinops telfairi 76 Small Madagascar hedgehog 26 18
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 61 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 18 14
No Yes Macropus eugenii 76_1.0 Tammar wallaby 26 17
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 59 28
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 39 23
No Yes Ornithorhynchus anatinus 76_5 Platypus 37 20
No Yes Saccoglossus kowalevskii v3.0   73 48
No Yes Petromyzon marinus 76_7.0 Sea lamprey 29 17
No Yes Meleagris gallopavo 76_2 Turkey 45 22
No Yes Gallus gallus 76_4 Chicken 35 20
No Yes Anas platyrhynchos 76_1.0 Mallard 32 18
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 31 18
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 34 19
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 41 22
No Yes Anolis carolinensis 76_2.0 Green anole 44 23
No Yes Xenopus laevis African clawed frog 127 67
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 48 27
No Yes Latimeria chalumnae 76_1 Coelacanth 55 30
No Yes Lepisosteus oculatus 76 Spotted gar 58 31
No Yes Gadus morhua 76_1 Atlantic cod 51 29
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 61 31
No Yes Takifugu rubripes 76_4 Torafugu 181 89
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 72 39
No Yes Oryzias latipes 76_1 Japanese medaka 66 33
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 50 27
No Yes Poecilia formosa 76 Amazon molly 52 26
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 94 45
No Yes Astyanax mexicanus 76 Mexican tetra 53 28
No Yes Danio rerio 76_9 Zebrafish 99 55
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 13 13
No Yes Ciona intestinalis 76 Vase tunicate 5 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 11 8
No Yes Adineta vaga   8 8
No Yes Octopus bimaculoides 280   15 12
No Yes Crassostrea gigas 22 Pacific oyster 10 8
No Yes Lottia gigantea Owl limpet 9 7
No Yes Helobdella robusta   7 7
No Yes Capitella sp. I   10 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 6
No Yes Heliconius melpomene Postman butterfly 5 5
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 7 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 21 17
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 8 8
No Yes Linepithema humile v1.1 Argentine ant 10 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 6
No Yes Solenopsis invicta v.2.2.3 Red fire ant 5 5
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 7
No Yes Atta cephalotes v1.1   8 7
No Yes Camponotus floridanus v3.3 Florida carpenter ant 6 6
No Yes Lucilia cuprina Australian sheep blowfly 7 7
No Yes Drosophila grimshawi 1.3   8 8
No Yes Drosophila willistoni 1.3   7 7
No Yes Drosophila pseudoobscura 2.13   8 8
No Yes Drosophila persimilis 1.3   4 4
No Yes Drosophila suzukii   9 8
No Yes Drosophila yakuba 1.3   6 6
No Yes Drosophila simulans 1.3   5 5
No Yes Drosophila sechellia 1.3   7 7
No Yes Drosophila melanogaster 76_5 Fruit fly 23 23
No Yes Drosophila erecta 1.3   6 6
No Yes Drosophila ananassae 1.3   6 6
No Yes Drosophila virilis 1.2   8 8
No Yes Drosophila mojavensis 1.3   8 8
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 10 10
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 7
No Yes Anopheles darlingi 22 American malaria mosquito 6 6
No Yes Anopheles gambiae 49_3j African malaria mosquito 7 7
No Yes Tribolium castaneum 3.0 Red flour beetle 10 10
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 7
No Yes Acyrthosiphon pisum Pea aphid 5 5
No Yes Rhodnius prolixus 22   8 7
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   12 7
No Yes Sarcoptes scabiei   4 4
No Yes Tetranychus urticae Two-spotted spider mite 5 5
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Pristionchus pacificus   7 7
No Yes Meloidogyne incognita Southern root-knot nematode 11 11
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   6 6
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 8 8
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   11 11
No Yes Caenorhabditis remanei   8 8
No Yes Caenorhabditis elegans 76_235 Roundworm 11 11
No Yes Caenorhabditis briggsae 2   9 9
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   3 3
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   3 3
No Yes Mnemiopsis leidyi Sea walnut 3 3
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 7
No Yes Hydra vulgaris   5 5
No Yes Amphimedon queenslandica   3 3
No Yes Trichoplax adhaerens   4 4
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Phycomyces blakesleeanus   1 1
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   2 2
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Blumeria graminis 22   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Alternaria brassicicola   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   1 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Candida lusitaniae ATCC 42720   1 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   2 2
No Yes Candida glabrata CBS138   2 2
No Yes Kluyveromyces thermotolerans CBS 6340   2 2
No Yes Lachancea kluyveri   2 2
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   2 2
No Yes Saccharomyces mikatae MIT   2 2
No Yes Saccharomyces paradoxus MIT   2 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 2 2
No Yes Saccharomyces bayanus MIT   2 2
No Yes Kluyveromyces lactis   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Catenaria anguillulae PL171 v1.0   2 2
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 6 6
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   20 20
No Yes Citrus clementina v165   14 14
No Yes Citrus sinensis v154 Sweet orange 12 12
No Yes Thellungiella halophila v173   10 10
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 9 9
No Yes Capsella rubella v183   7 7
No Yes Arabidopsis lyrata Lyrate rockcress 7 7
No Yes Arabidopsis thaliana 10 Thale cress 10 10
No Yes Carica papaya Papaya 5 5
No Yes Medicago truncatula Barrel medic 14 14
No Yes Phaseolus vulgaris v186 French bean 7 7
No Yes Glycine max v109 Soybean 18 18
No Yes Cucumis sativus v122 Cucumber 10 10
No Yes Fragaria vesca Wild strawberry 6 6
No Yes Malus domestica v196 Apple 15 15
No Yes Prunus persica v139 Peach 5 5
No Yes Linum usitatissimum v200 Flax 9 9
No Yes Manihot esculenta v147 Cassava 8 8
No Yes Populus trichocarpa v156 Black cottonwood 12 12
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 5 5
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 13 13
No Yes Actinidia chinensis Hongyang   7 7
No Yes Aquilegia coerulea v195   9 9
No Yes Triticum urartu 22   6 6
No Yes Triticum aestivum 22 Bread wheat 19 19
No Yes Aegilops tauschii 22   4 4
No Yes Brachypodium distachyon Stiff brome 13 13
No Yes Oryza barthii 22 African wild rice 10 10
No Yes Oryza meridionalis 22   7 7
No Yes Oryza glumaepatula 22   11 11
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   14 14
No Yes Oryza nivara 22   9 9
No Yes Oryza brachyantha 22 Malo sina 8 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 11 11
No Yes Oryza sativa v193 Rice 11 11
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 7 7
No Yes Panicum virgatum v202 Switchgrass 25 25
No Yes Setaria italica v164 Foxtail millet 10 10
No Yes Zea mays subsp. mays Maize 19 19
No Yes Zea mays v181 Maize 19 19
No Yes Sorghum bicolor Sorghum 9 9
No Yes Musa balbisiana Balbis banana 10 10
No Yes Musa acuminata 22 Wild Malaysian banana 11 11
No Yes Amborella trichopoda 22   5 5
No Yes Physcomitrella patens   5 5
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   2 2
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   2 2
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   3 3
No Yes Cyanophora paradoxa   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 2 2
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   2 2
No Yes Fragilariopsis cylindrus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Pyrolobus fumarii 1A   1 1
No Yes Hyperthermus butylicus DSM 5456   1 1
No Yes Thermogladius cellulolyticus 1633   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Aeropyrum pernix K1   3 2
No Yes Thermosphaera aggregans DSM 11486   1 1
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Staphylothermus marinus F1   1 1
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Desulfurococcus mucosus DSM 2162   1 1
No Yes Acidianus hospitalis W1   1 1
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 79 45
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 16 16
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 8 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 8
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 9 9
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   2 2
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CBS7960   2 2
No Yes Saccharomyces cerevisiae YJM269   2 2
No Yes Saccharomyces cerevisiae T7   2 2
No Yes Saccharomyces cerevisiae FostersB   2 2
No Yes Saccharomyces cerevisiae FostersO   2 2
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   2 2
No Yes Saccharomyces cerevisiae LalvinQA23   2 2
No Yes Saccharomyces cerevisiae AWRI796   2 2
No Yes Saccharomyces cerevisiae Sigma1278b   2 2
No Yes Saccharomyces cerevisiae W303   2 2
No Yes Saccharomyces cerevisiae JAY291   2 2
No Yes Saccharomyces cerevisiae AWRI1631   2 2
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae M22   2 2
No Yes Saccharomyces cerevisiae CLIB215   2 2
No Yes Saccharomyces cerevisiae Y10   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 2 2
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 10 10
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 8 8
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   3 2
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 196 127
No Yes Homo sapiens (NCBI version) Human 84 53
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 41 23
No Yes Loa loa v3.3 (Request) Eye worm 6 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 7 7
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   6 6
No Yes Malus x domestica (Duplicate) Apple 15 15
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   14 14
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 39 21
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 38 20
No Yes Gorilla gorilla 69_3.1 Western gorilla 48 25
No Yes Pongo abelii 69_2 Sumatran orangutan 43 24
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 38 20
No Yes Macaca mulatta 69_1 Rhesus monkey 35 21
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 48 28
No Yes Otolemur garnettii 69_3 Small-eared galago 42 25
No Yes Microcebus murinus 69_1 Gray mouse lemur 26 14
No Yes Rattus norvegicus 69_3.4 Norway rat 43 28
No Yes Mus musculus 69_38 House mouse 41 23
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 28 17
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 35 19
No Yes Cavia porcellus 69_3 Domestic guinea pig 39 21
No Yes Oryctolagus cuniculus 69_2 Rabbit 42 27
No Yes Ochotona princeps 69 American pika 34 18
No Yes Tupaia belangeri 69 Northern tree shrew 21 17
No Yes Sus scrofa 69_10.2 Pig 38 23
No Yes Bos taurus 69_3.1 Cattle 40 23
No Yes Vicugna pacos 69_1 Alpaca 22 14
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 34 20
No Yes Mustela putorius furo 69_1.0 Domestic ferret 40 23
No Yes Ailuropoda melanoleuca 69_1 Giant panda 40 22
No Yes Canis familiaris 69_3.1 Dog 43 24
No Yes Felis catus 69 Domestic cat 27 15
No Yes Equus caballus 69_2 Horse 40 22
No Yes Myotis lucifugus 69_2.0 Little brown bat 41 23
No Yes Pteropus vampyrus 69_1 Large flying fox 33 18
No Yes Sorex araneus 69_1 European shrew 15 10
No Yes Erinaceus europaeus 69 Western European hedgehog 22 13
No Yes Procavia capensis 69_1 Cape rock hyrax 25 14
No Yes Loxodonta africana 69_3 African savanna elephant 38 21
No Yes Echinops telfairi 69 Small Madagascar hedgehog 26 18
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 27 17
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 18 14
No Yes Macropus eugenii 69_1.0 Tammar wallaby 26 17
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 45 22
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 39 23
No Yes Ornithorhynchus anatinus 69_5 Platypus 32 18
No Yes Petromyzon marinus 69_7.0 Sea lamprey 27 16
No Yes Meleagris gallopavo 69_2 Turkey 30 16
No Yes Gallus gallus 69_2 Chicken 31 17
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 31 18
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 34 19
No Yes Anolis carolinensis 69_2.0 Green anole 41 21
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 36 19
No Yes Latimeria chalumnae 69_1 Coelacanth 38 21
No Yes Gadus morhua 69_1 Atlantic cod 50 28
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 49 25
No Yes Takifugu rubripes 69_4 Torafugu 53 26
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 57 29
No Yes Oryzias latipes 69_1 Japanese medaka 50 24
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 50 27
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 64 32
No Yes Danio rerio 69_9 Zebrafish 51 28
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 5 4
No Yes Drosophila melanogaster 69_5 Fruit fly 7 7
No Yes Caenorhabditis elegans 69_215 Roundworm 6 6
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 2 2
No Yes Arabidopsis thaliana 10 Thale cress 6 6
No Yes 2_050719S (meta-genome)   1 1
No Yes Core Eukaryotic Genes 458 (CEGMA)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes NCBI 2017_08 genome   36012 20870
No Yes STRING v9.0.5 (STRING)   1311 856
No Yes Uniprot 2018_03 genome   14315 9581
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   32 30
No Yes Protein Data Bank (all PDB sequenc)   53 53
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   277 277
No Yes TargetDB (Targets)   62 40

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@mrc-lmb.cam.ac.uk or use the feedback form.

© Copyright 2017 The SUPERFAMILY authors and Julian Gough.