SUPERFAMILY 1.75 HMM library and genome assignments server

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Protease propeptides/inhibitors superfamily domain assignments
in
Brachybacterium faecium DSM 4810


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Select to display   Genome       Domains   Proteins
No Yes ALL   66228 66228
No Yes Homo sapiens 76_38 Human 57 57
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 18 18
No Yes Gorilla gorilla 76_3.1 Western gorilla 17 17
No Yes Pongo abelii 76_2 Sumatran orangutan 15 15
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 15 15
No Yes Papio anubis 76 Olive baboon 16 16
No Yes Macaca mulatta 76_1 Rhesus monkey 21 21
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 30 30
No Yes Otolemur garnettii 76_3 Small-eared galago 13 13
No Yes Microcebus murinus 76_1 Gray mouse lemur 14 14
No Yes Rattus norvegicus 76_5.0 Norway rat 16 16
No Yes Mus musculus 76_38 House mouse 28 28
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 13 13
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 16 16
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 12 12
No Yes Cavia porcellus 76_3 Domestic guinea pig 15 15
No Yes Oryctolagus cuniculus 76_2 Rabbit 15 15
No Yes Ochotona princeps 76 American pika 13 13
No Yes Tupaia belangeri 76 Northern tree shrew 9 9
No Yes Sus scrofa 76_10.2 Pig 19 19
No Yes Bos taurus 76_3.1 Cattle 14 14
No Yes Ovis aries 76_3.1 Sheep 17 17
No Yes Vicugna pacos 76_1 Alpaca 11 11
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 15
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 76_1 Giant panda 15 15
No Yes Canis familiaris 76_3.1 Dog 18 18
No Yes Felis catus 76_6.2 Domestic cat 13 13
No Yes Equus caballus 76_2 Horse 15 14
No Yes Myotis lucifugus 76_2.0 Little brown bat 12 12
No Yes Pteropus vampyrus 76_1 Large flying fox 14 14
No Yes Sorex araneus 76_1 European shrew 8 8
No Yes Erinaceus europaeus 76 Western European hedgehog 11 11
No Yes Procavia capensis 76_1 Cape rock hyrax 12 12
No Yes Loxodonta africana 76_3 African savanna elephant 17 17
No Yes Echinops telfairi 76 Small Madagascar hedgehog 12 12
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 14
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 10 10
No Yes Macropus eugenii 76_1.0 Tammar wallaby 13 13
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 17 17
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 15 15
No Yes Ornithorhynchus anatinus 76_5 Platypus 10 10
No Yes Saccoglossus kowalevskii v3.0   79 78
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 12 12
No Yes Gallus gallus 76_4 Chicken 16 16
No Yes Anas platyrhynchos 76_1.0 Mallard 13 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 12 12
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 14 14
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 17 17
No Yes Anolis carolinensis 76_2.0 Green anole 15 15
No Yes Xenopus laevis African clawed frog 57 57
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 20 20
No Yes Latimeria chalumnae 76_1 Coelacanth 12 11
No Yes Lepisosteus oculatus 76 Spotted gar 16 16
No Yes Gadus morhua 76_1 Atlantic cod 13 13
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 19 19
No Yes Takifugu rubripes 76_4 Torafugu 38 38
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 17 17
No Yes Oryzias latipes 76_1 Japanese medaka 22 22
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 16
No Yes Poecilia formosa 76 Amazon molly 14 14
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 14 14
No Yes Astyanax mexicanus 76 Mexican tetra 14 14
No Yes Danio rerio 76_9 Zebrafish 24 24
No Yes Oikopleura dioica   11 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 15 14
No Yes Ciona intestinalis 76 Vase tunicate 14 14
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 74 74
No Yes Adineta vaga   22 22
No Yes Octopus bimaculoides 280   8 8
No Yes Crassostrea gigas 22 Pacific oyster 7 7
No Yes Lottia gigantea Owl limpet 6 6
No Yes Helobdella robusta   13 13
No Yes Capitella sp. I   20 20
No Yes Danaus plexippus OGS1.0 Monarch butterfly 20 20
No Yes Heliconius melpomene Postman butterfly 19 10
No Yes Bombyx mori Domestic silkworm 11 10
No Yes Nasonia vitripennis Jewel wasp 12 12
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 23 23
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 7
No Yes Linepithema humile v1.1 Argentine ant 12 10
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 12 12
No Yes Solenopsis invicta v.2.2.3 Red fire ant 8 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 14 12
No Yes Atta cephalotes v1.1   10 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 5
No Yes Lucilia cuprina Australian sheep blowfly 21 14
No Yes Drosophila grimshawi 1.3   21 21
No Yes Drosophila willistoni 1.3   23 23
No Yes Drosophila pseudoobscura 2.13   22 22
No Yes Drosophila persimilis 1.3   20 20
No Yes Drosophila suzukii   22 17
No Yes Drosophila yakuba 1.3   21 21
No Yes Drosophila simulans 1.3   17 17
No Yes Drosophila sechellia 1.3   18 18
No Yes Drosophila melanogaster 76_5 Fruit fly 38 38
No Yes Drosophila erecta 1.3   21 21
No Yes Drosophila ananassae 1.3   20 20
No Yes Drosophila virilis 1.2   22 22
No Yes Drosophila mojavensis 1.3   23 23
No Yes Megaselia scalaris 22   8 8
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 22 22
No Yes Culex pipiens quinquefasciatus Southern house mosquito 23 23
No Yes Anopheles darlingi 22 American malaria mosquito 12 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 18 18
No Yes Tribolium castaneum 3.0 Red flour beetle 13 13
No Yes Pediculus humanus corporis (Early assembly) Human body louse 6 6
No Yes Acyrthosiphon pisum Pea aphid 5 5
No Yes Rhodnius prolixus 22   4 4
No Yes Daphnia pulex Common water flea 27 26
No Yes Strigamia maritima 22   11 11
No Yes Sarcoptes scabiei   4 4
No Yes Tetranychus urticae Two-spotted spider mite 8 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 3 3
No Yes Pristionchus pacificus   8 8
No Yes Meloidogyne incognita Southern root-knot nematode 15 15
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   10 10
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 11 11
No Yes Caenorhabditis japonica   11 11
No Yes Caenorhabditis brenneri   13 12
No Yes Caenorhabditis remanei   11 11
No Yes Caenorhabditis elegans 76_235 Roundworm 33 33
No Yes Caenorhabditis briggsae 2   9 9
No Yes Trichinella spiralis 22   5 5
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   2 2
No Yes Mnemiopsis leidyi Sea walnut 9 8
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   11 11
No Yes Nematostella vectensis 1.0 Starlet sea anemone 15 14
No Yes Hydra vulgaris   13 13
No Yes Amphimedon queenslandica   17 16
No Yes Trichoplax adhaerens   2 2
No Yes Proterospongia sp. ATCC 50818   3 3
No Yes Monosiga brevicollis   3 3
No Yes Capsaspora owczarzaki ATCC 30864   8 8
No Yes Conidiobolus coronatus NRRL28638 v1.0   17 17
No Yes Mortierella verticillata NRRL 6337   20 20
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   5 5
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   4 4
No Yes Malassezia globosa CBS 7966   4 4
No Yes Sporisorium reilianum 22   3 3
No Yes Ustilago maydis   3 3
No Yes Mixia osmundae IAM 14324 v1.0   9 9
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   6 6
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   9 9
No Yes Melampsora laricis-populina   5 5
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   3 3
No Yes Microbotryum violaceum 22   2 2
No Yes Wallemia sebi v1.0   4 4
No Yes Sphaerobolus stellatus v1.0   25 23
No Yes Piloderma croceum F 1598 v1.0   9 9
No Yes Serpula lacrymans var. lacrymans S7.9   11 11
No Yes Coniophora puteana   21 20
No Yes Hydnomerulius pinastri v2.0   10 10
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   6 6
No Yes Pisolithus microcarpus 441 v1.0   4 4
No Yes Pisolithus tinctorius Marx 270 v1.0   4 4
No Yes Scleroderma citrinum Foug A v1.0   6 6
No Yes Coprinopsis cinerea okayama7 130 v3   8 8
No Yes Pleurotus ostreatus Oyster mushroom 12 12
No Yes Amanita thiersii Skay4041 v1.0   13 13
No Yes Amanita muscaria Koide v1.0 Fly agaric 8 8
No Yes Galerina marginata v1.0   22 22
No Yes Hebeloma cylindrosporum h7 v2.0   12 12
No Yes Laccaria bicolor S238N-H82   12 12
No Yes Agaricus bisporus var. bisporus   7 7
No Yes Schizophyllum commune   9 9
No Yes Stereum hirsutum FP-91666 SS1 v1.0   22 21
No Yes Heterobasidion annosum   18 18
No Yes Gloeophyllum trabeumv1.0   12 12
No Yes Punctularia strigosozonata v1.0   13 13
No Yes Sebacina vermifera MAFF 305830 v1.0   12 12
No Yes Fomitiporia mediterranea v1.0   9 9
No Yes Tulasnella calospora AL13/4D v1.0   7 7
No Yes Postia placenta   36 36
No Yes Wolfiporia cocos MD-104 SS10 v1.0   20 20
No Yes Fomitopsis pinicolav1.0   31 31
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   30 30
No Yes Phanerochaete chrysosporium RP-78 2.1   10 10
No Yes Dichomitus squalens   29 29
No Yes Trametes versicolor v1.0   31 31
No Yes Tremella mesenterica Witches' butter 2 2
No Yes Daldinia eschscholzii EC12 v1.0   17 17
No Yes Apiospora montagnei NRRL 25634 v1.0   19 19
No Yes Magnaporthe poae ATCC 64411 22   7 7
No Yes Magnaporthe grisea 70-15   14 14
No Yes Podospora anserina   11 11
No Yes Sporotrichum thermophile ATCC 42464   8 8
No Yes Thielavia terrestris NRRL 8126   10 10
No Yes Chaetomium globosum CBS 148.51   15 15
No Yes Neurospora tetrasperma   9 9
No Yes Neurospora discreta FGSC 8579   8 8
No Yes Neurospora crassa OR74A   11 11
No Yes Cryphonectria parasitica Chestnut blight fungus 16 16
No Yes Verticillium albo-atrum VaMs.102   10 10
No Yes Verticillium dahliae VdLs.17   11 11
No Yes Acremonium alcalophilumv 1.0   8 8
No Yes Glomerella graminicola 22   17 17
No Yes Fusarium graminearum   19 19
No Yes Nectria haematococca mpVI   15 15
No Yes Fusarium oxysporum f. sp. lycopersici 4286   20 20
No Yes Fusarium verticillioides 7600   18 18
No Yes Trichoderma asperellum CBS 433.97 v1.0   19 19
No Yes Trichoderma atroviride   22 22
No Yes Trichoderma citrinoviride v1.0   14 14
No Yes Trichoderma reesei 1.2   12 12
No Yes Trichoderma virens Gv29-8   16 16
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   10 10
No Yes Trichoderma harzianum CBS 226.95 v1.0   20 20
No Yes Amorphotheca resinae v1.0 Creosote fungus 14 14
No Yes Botrytis cinerea B05.10   14 14
No Yes Sclerotinia sclerotiorum   12 12
No Yes Blumeria graminis 22   3 3
No Yes Didymella exigua CBS 183.55 v1.0   11 11
No Yes Leptosphaeria maculans 22   12 12
No Yes Setosphaeria turcica v1.0   15 15
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   12 12
No Yes Cochliobolus victoriae FI3 v1.0   14 14
No Yes Cochliobolus carbonum 26-R-13 v1.0   13 13
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 8 8
No Yes Alternaria brassicicola   15 15
No Yes Cochliobolus lunatus m118 v2.0   12 12
No Yes Pyrenophora teres f. teres 22   14 14
No Yes Pyrenophora tritici-repentis   13 13
No Yes Stagonospora nodorum   16 16
No Yes Mycosphaerella graminicola IPO323   14 14
No Yes Zasmidium cellare ATCC 36951 v1.0   31 31
No Yes Dothistroma septosporum   12 12
No Yes Septoria musiva v1.0   12 12
No Yes Mycosphaerella fijiensis CIRAD86   10 10
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   8 8
No Yes Paracoccidioides brasiliensis Pb18   7 7
No Yes Coccidioides posadasii RMSCC 3488   17 17
No Yes Coccidioides immitis RS   17 17
No Yes Ajellomyces dermatitidis SLH14081   7 7
No Yes Histoplasma capsulatum class NAmI strain WU24   5 5
No Yes Microsporum canis CBS 113480   15 15
No Yes Trichophyton equinum CBS 127.97   15 15
No Yes Trichophyton verrucosum HKI 0517   17 17
No Yes Arthroderma benhamiae CBS 112371   16 16
No Yes Trichophyton tonsurans CBS 112818   18 18
No Yes Trichophyton rubrum CBS 118892   17 17
No Yes Uncinocarpus reesii 1704   17 17
No Yes Aspergillus zonatus v1.0   9 9
No Yes Penicillium chrysogenum Wisconsin 54-1255   8 8
No Yes Penicillium chrysogenum v1.0   9 9
No Yes Aspergillus acidus v1.0   12 12
No Yes Aspergillus fumigatus Af293   11 11
No Yes Aspergillus brasiliensis v1.0   10 10
No Yes Aspergillus nidulans FGSC A4   8 8
No Yes Aspergillus sydowii v1.0   7 7
No Yes Aspergillus versicolor v1.0   7 7
No Yes Aspergillus glaucus   6 6
No Yes Aspergillus carbonarius ITEM 5010   8 8
No Yes Neosartorya fischeri NRRL 181   8 8
No Yes Aspergillus terreus NIH2624   6 6
No Yes Aspergillus tubingensis v1.0   11 11
No Yes Aspergillus wentii v1.0   8 8
No Yes Aspergillus oryzae RIB40   8 8
No Yes Aspergillus niger 22   11 11
No Yes Aspergillus niger ATCC 1015   5 5
No Yes Aspergillus flavus NRRL3357   9 9
No Yes Aspergillus clavatus NRRL 1   7 7
No Yes Penicillium marneffei ATCC 18224   11 11
No Yes Tuber melanosporum Mel28 22   3 3
No Yes Tuber melanosporum Vittad Perigord truffle 3 3
No Yes Hansenula polymorpha v2.0   2 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 2
No Yes Pichia membranifaciensv1.0   3 3
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   4 4
No Yes Candida dubliniensis CD36   3 3
No Yes Candida tropicalis MYA-3404   5 5
No Yes Candida parapsilosis   3 3
No Yes Candida albicans SC5314   4 4
No Yes Lodderomyces elongisporus NRRL YB-4239   3 3
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   3 3
No Yes Pichia stipitis CBS 6054   4 4
No Yes Candida guilliermondii ATCC 6260   3 3
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   5 5
No Yes Debaromyces hansenii   2 2
No Yes Wickerhamomyces anomalus   3 3
No Yes Pichia pastoris GS115   2 2
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   9 9
No Yes Candida lusitaniae ATCC 42720   3 3
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   3 3
No Yes Vanderwaltozyma polyspora DSM 70294   2 2
No Yes Candida glabrata CBS138   5 5
No Yes Kluyveromyces thermotolerans CBS 6340   3 3
No Yes Lachancea kluyveri   4 4
No Yes Kluyveromyces waltii   3 3
No Yes Ashbya gossypii ATCC 10895   3 3
No Yes Zygosaccharomyces rouxii   3 3
No Yes Saccharomyces mikatae MIT   5 5
No Yes Saccharomyces paradoxus MIT   6 6
No Yes Saccharomyces cerevisiae 76 Baker's yeast 5 5
No Yes Saccharomyces bayanus MIT   5 5
No Yes Kluyveromyces lactis   3 3
No Yes Schizosaccharomyces cryophilus OY26 22   4 4
No Yes Schizosaccharomyces octosporus yFS286   3 3
No Yes Schizosaccharomyces japonicus yFS275   3 3
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   26 26
No Yes Allomyces macrogynus ATCC 38327   18 18
No Yes Spizellomyces punctatus DAOM BR117   10 10
No Yes Dictyostelium discoideum   8 8
No Yes Dictyostelium purpureum   8 8
No Yes Selaginella moellendorffii   6 6
No Yes Pinus taeda Loblolly pine 8 8
No Yes Picea abies Norway spruce 4 4
No Yes Eucalyptus grandis v201 Rose gum 11 11
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   16 16
No Yes Citrus clementina v165   11 11
No Yes Citrus sinensis v154 Sweet orange 9 9
No Yes Thellungiella halophila v173   7 7
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 8 8
No Yes Capsella rubella v183   8 8
No Yes Arabidopsis lyrata Lyrate rockcress 7 7
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 13 13
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 17 17
No Yes Cucumis sativus v122 Cucumber 9 9
No Yes Fragaria vesca Wild strawberry 6 6
No Yes Malus domestica v196 Apple 10 10
No Yes Prunus persica v139 Peach 6 6
No Yes Linum usitatissimum v200 Flax 9 9
No Yes Manihot esculenta v147 Cassava 11 11
No Yes Populus trichocarpa v156 Black cottonwood 11 11
No Yes Vitis vinifera Wine grape 3 3
No Yes Mimulus guttatus v140 Spotted monkey flower 7 7
No Yes Solanum lycopersicum v.2.3 Tomato 7 7
No Yes Solanum tuberosum Potato 7 7
No Yes Actinidia chinensis Hongyang   4 4
No Yes Aquilegia coerulea v195   9 9
No Yes Triticum urartu 22   5 5
No Yes Triticum aestivum 22 Bread wheat 7 7
No Yes Aegilops tauschii 22   4 4
No Yes Brachypodium distachyon Stiff brome 7 7
No Yes Oryza barthii 22 African wild rice 3 3
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   4 4
No Yes Oryza glaberrima African rice 5 5
No Yes Oryza punctata 22   5 5
No Yes Oryza nivara 22   7 7
No Yes Oryza brachyantha 22 Malo sina 6 6
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 5 5
No Yes Oryza sativa v193 Rice 5 5
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 7 7
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 5 5
No Yes Sorghum bicolor Sorghum 4 4
No Yes Musa balbisiana Balbis banana 4 4
No Yes Musa acuminata 22 Wild Malaysian banana 5 5
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Thecamonas trahens ATCC 50062   7 7
No Yes Bigelowiella natans CCMP2755 22   5 5
No Yes Cyanophora paradoxa   10 10
No Yes Aureococcus anophagefferens   4 4
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   2 2
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 2 2
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   2 2
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   11 11
No Yes Fragilariopsis cylindrus   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Naegleria gruberi   4 4
No Yes Emiliania huxleyi CCMP1516   2 2
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   3 3
No Yes Acidothermus cellulolyticus 11B   2 2
No Yes Catenulispora acidiphila DSM 44928   11 11
No Yes Stackebrandtia nassauensis DSM 44728   7 7
No Yes Frankia sp. EAN1pec   1 1
No Yes Frankia alni ACN14a   3 3
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   2 2
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   3 3
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces sp. SirexAA-E   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   5 5
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinosynnema mirum DSM 43827   8 8
No Yes Saccharomonospora viridis DSM 43017   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   4 4
No Yes Amycolatopsis mediterranei U32   4 4
No Yes Kribbella flavida DSM 17836   2 2
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Salinispora arenicola CNS-205   3 3
No Yes Salinispora tropica CNB-440   1 1
No Yes Verrucosispora maris AB-18-032   8 8
No Yes Micromonospora sp. L5   2 2
No Yes Micromonospora aurantiaca ATCC 27029   2 2
No Yes Actinoplanes sp. N902-109   3 3
No Yes Actinoplanes sp. SE50/110   4 4
No Yes Actinoplanes missouriensis 431   4 4
No Yes Segniliparus rotundus DSM 44985   2 2
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium rhodesiae NBB3   2 2
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Kytococcus sedentarius DSM 20547   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   2 2
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   4 4
No Yes Intrasporangium calvum DSM 43043   2 2
No Yes Kocuria rhizophila DC2201   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   3 3
No Yes Deinococcus deserti VCD115   5 5
No Yes Deinococcus maricopensis DSM 21211   5 5
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   2 2
No Yes Deinococcus radiodurans R1   2 2
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Marinithermus hydrothermalis DSM 14884   1 1
No Yes Meiothermus silvanus DSM 9946   2 2
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Sulfobacillus acidophilus DSM 10332   3 3
No Yes Thermincola potens JR   2 2
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Moorella thermoacetica ATCC 39073   1 1
No Yes Lactobacillus buchneri NRRL B-30929   7 7
No Yes Lactobacillus buchneri   8 8
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Exiguobacterium sp. AT1b   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   3 3
No Yes Geobacillus sp. WCH70   1 1
No Yes Geobacillus thermodenitrificans NG80-2   1 1
No Yes Bacillus sp. JS   2 2
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus amyloliquefaciens FZB42   2 2
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus halodurans C-125   2 2
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus pseudofirmus OF4   2 2
No Yes Bacillus clausii KSM-K16   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Bacillus pumilus SAFR-032   2 2
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Croceibacter atlanticus HTCC2559   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   4 4
No Yes Granulicella tundricola MP5ACTX9   10 10
No Yes Granulicella mallensis MP5ACTX8   11 11
No Yes Candidatus Koribacter versatilis Ellin345   6 6
No Yes Terriglobus saanensis SP1PR4   5 5
No Yes Terriglobus roseus DSM 18391   3 3
No Yes Acidobacterium capsulatum ATCC 51196   6 6
No Yes Bacteriovorax marinus SJ   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Haliangium ochraceum DSM 14365   9 9
No Yes Sorangium cellulosum 'So ce 56'   3 3
No Yes Stigmatella aurantiaca DW4/3-1   12 12
No Yes Corallococcus coralloides DSM 2259   5 5
No Yes Myxococcus xanthus DK 1622   3 3
No Yes Myxococcus fulvus HW-1   1 1
No Yes Chromobacterium violaceum ATCC 12472   3 3
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   5 5
No Yes Burkholderia pseudomallei 1106a   4 4
No Yes Burkholderia mallei SAVP1   2 2
No Yes Burkholderia ambifaria AMMD   4 4
No Yes Burkholderia cenocepacia HI2424   3 3
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   3 3
No Yes Burkholderia glumae BGR1   3 3
No Yes Polaromonas sp. JS666   1 1
No Yes Collimonas fungivorans Ter331   2 2
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Teredinibacter turnerae T7901   3 3
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella denitrificans OS217   2 2
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   2 2
No Yes Shewanella woodyi ATCC 51908   3 3
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   3 3
No Yes Shewanella violacea DSS12   2 2
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Kangiella koreensis DSM 16069   3 3
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   3 3
No Yes Xanthomonas albilineans GPE PC73   5 5
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Legionella longbeachae NSW150   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acidilobus saccharovorans 345-15   3 3
No Yes Metallosphaera cuprina Ar-4   3 3
No Yes Metallosphaera sedula DSM 5348   4 4
No Yes Acidianus hospitalis W1   2 2
No Yes Sulfolobus tokodaii str. 7   4 4
No Yes Sulfolobus islandicus Y.N.15.51   4 4
No Yes Sulfolobus solfataricus P2   3 3
No Yes Sulfolobus acidocaldarius DSM 639   2 2
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Thermoproteus tenax Kra 1   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella arvoryzae MRE50   2 2
No Yes Methanocella conradii HZ254   3 3
No Yes Methanocella paludicola SANAE   4 4
No Yes Thermococcus onnurineus NA1   2 2
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermoplasma volcanium GSS1   3 3
No Yes Thermoplasma acidophilum DSM 1728   2 2
No Yes Picrophilus torridus DSM 9790   2 2
No Yes Aciduliprofundum sp. MAR08-339   2 2
No Yes Aciduliprofundum boonei T469   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 26 26
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 33 33
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 22 22
No Yes Ascaris suum Victoria/Ghent Pig roundworm 7 7
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 23 23
No Yes Cryptococcus neoformans var. grubii H99   2 2
No Yes Cryptococcus neoformans B-3501A   2 2
No Yes Cryptococcus neoformans JEC21   2 2
No Yes Paracoccidioides brasiliensis Pb01   6 6
No Yes Paracoccidioides brasiliensis Pb03   5 5
No Yes Coccidioides posadasii str. Silveira   17 17
No Yes Coccidioides immitis RMSCC 3703   16 16
No Yes Coccidioides immitis RMSCC 2394   17 17
No Yes Coccidioides immitis H538.4   17 17
No Yes Ajellomyces dermatitidis ER-3   7 7
No Yes Histoplasma capsulatum H143   5 5
No Yes Histoplasma capsulatum H88   6 6
No Yes Histoplasma capsulatum G186AR   6 6
No Yes Aspergillus fumigatus A1163   10 10
No Yes Candida albicans WO-1   4 4
No Yes Saccharomyces cerevisiae UC5   5 5
No Yes Saccharomyces cerevisiae PW5   4 4
No Yes Saccharomyces cerevisiae FL100   2 2
No Yes Saccharomyces cerevisiae CLIB382   2 2
No Yes Saccharomyces cerevisiae CLIB324   3 3
No Yes Saccharomyces cerevisiae CBS7960   5 5
No Yes Saccharomyces cerevisiae YJM269   5 5
No Yes Saccharomyces cerevisiae T7   5 5
No Yes Saccharomyces cerevisiae FostersB   3 3
No Yes Saccharomyces cerevisiae FostersO   4 4
No Yes Saccharomyces cerevisiae VL3   4 4
No Yes Saccharomyces cerevisiae Vin13   4 4
No Yes Saccharomyces cerevisiae LalvinQA23   4 4
No Yes Saccharomyces cerevisiae AWRI796   4 4
No Yes Saccharomyces cerevisiae Sigma1278b   5 5
No Yes Saccharomyces cerevisiae W303   5 5
No Yes Saccharomyces cerevisiae JAY291   5 5
No Yes Saccharomyces cerevisiae AWRI1631   4 4
No Yes Saccharomyces cerevisiae YPS163   4 4
No Yes Saccharomyces cerevisiae T73   1 1
No Yes Saccharomyces cerevisiae CLIB215   4 4
No Yes Saccharomyces cerevisiae Y10   2 2
No Yes Saccharomyces cerevisiae YJM789   5 5
No Yes Saccharomyces cerevisiae YJM789   5 5
No Yes Saccharomyces cerevisiae RM11-1a   5 5
No Yes Saccharomyces cerevisiae RM11-1a   5 5
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 5 5
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   4 4
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 6 6
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 4
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   6 6
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   3 3
No Yes Streptomyces rapamycinicus NRRL 5491   3 3
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   6 6
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   16 16
No Yes Amycolatopsis mediterranei RB   4 4
No Yes Amycolatopsis mediterranei S699   4 4
No Yes Amycolatopsis mediterranei S699   4 4
No Yes Amycolatopsis orientalis HCCB10007   7 7
No Yes Actinoplanes friuliensis DSM 7358   4 4
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   3 3
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   3 3
No Yes Chthonomonas calidirosea T49   2 2
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Sulfobacillus acidophilus TPY   3 3
No Yes Clostridium acidurici 9a   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Lactobacillus brevis KB290   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   3 3
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   2 2
No Yes Bacillus amyloliquefaciens LFB112   2 2
No Yes Bacillus amyloliquefaciens CC178   2 2
No Yes Bacillus amyloliquefaciens Y2   2 2
No Yes Bacillus amyloliquefaciens IT-45   2 2
No Yes Bacillus amyloliquefaciens XH7   2 2
No Yes Bacillus amyloliquefaciens LL3   2 2
No Yes Bacillus amyloliquefaciens TA208   2 2
No Yes Bacillus amyloliquefaciens DSM 7   2 2
No Yes Bacillus licheniformis 9945A   2 2
No Yes Bacillus subtilis PY79   2 2
No Yes Bacillus subtilis XF-1   2 2
No Yes Bacillus subtilis QB928   2 2
No Yes Bacillus subtilis BSn5   2 2
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   2 2
No Yes Bacillus subtilis subsp. subtilis str. BSP1   2 2
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   2 2
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   2 2
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   2 2
No Yes Bacillus subtilis subsp. spizizenii str. W23   2 2
No Yes Bacillus subtilis subsp. natto BEST195   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus infantis NRRL B-14911   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus megaterium WSH-002   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Geobacter sp. M18   2 2
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Myxococcus stipitatus DSM 14675   4 4
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   3 3
No Yes Burkholderia thailandensis MSMB121   3 3
No Yes Burkholderia pseudomallei MSHR305   4 4
No Yes Burkholderia pseudomallei NCTC 13179   4 4
No Yes Burkholderia pseudomallei BPC006   4 4
No Yes Burkholderia pseudomallei 1026b   4 4
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   4 4
No Yes Burkholderia pseudomallei 1710b   4 4
No Yes Burkholderia pseudomallei K96243   4 4
No Yes Burkholderia mallei NCTC 10229   3 3
No Yes Burkholderia mallei NCTC 10247   3 3
No Yes Burkholderia mallei ATCC 23344   3 3
No Yes Burkholderia lata   4 4
No Yes Burkholderia ambifaria MC40-6   4 4
No Yes Burkholderia cenocepacia MC0-3   3 3
No Yes Burkholderia cenocepacia AU 1054   3 3
No Yes Burkholderia cenocepacia J2315   3 3
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia cepacia GG4   4 4
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   3 3
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   2 2
No Yes Shewanella baltica OS678   2 2
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella sp. MR-7   1 1
No Yes Shewanella putrefaciens 200   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   3 3
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   3 3
No Yes Xanthomonas axonopodis pv. citrumelo F1   3 3
No Yes Xanthomonas axonopodis Xac29-1   3 3
No Yes Xanthomonas oryzae pv. oryzicola BLS256   3 3
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Sulfolobus islandicus LAL14/1   4 4
No Yes Sulfolobus islandicus REY15A   4 4
No Yes Sulfolobus islandicus HVE10/4   4 4
No Yes Sulfolobus islandicus Y.G.57.14   4 4
No Yes Sulfolobus islandicus L.S.2.15   4 4
No Yes Sulfolobus islandicus M.16.27   4 4
No Yes Sulfolobus islandicus M.14.25   4 4
No Yes Sulfolobus islandicus M.16.4   4 4
No Yes Sulfolobus islandicus L.D.8.5   4 4
No Yes Sulfolobus solfataricus 98/2   3 3
No Yes Sulfolobus acidocaldarius SUSAZ   2 2
No Yes Sulfolobus acidocaldarius Ron12/I   2 2
No Yes Sulfolobus acidocaldarius N8   2 2
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Halovivax ruber XH-70   2 2
No Yes Natronococcus occultus SP4   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 62 62
No Yes Homo sapiens (NCBI version) Human 31 31
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 17 17
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 6 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 5 5
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Moniliophthora perniciosa FA553 (Genome survey)   5 5
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 10 10
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   7 7
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 7 7
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 7 7
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Homo sapiens 69_37 Human 19 19
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 17 17
No Yes Gorilla gorilla 69_3.1 Western gorilla 15 15
No Yes Pongo abelii 69_2 Sumatran orangutan 15 15
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 14 14
No Yes Macaca mulatta 69_1 Rhesus monkey 16 16
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 17 17
No Yes Otolemur garnettii 69_3 Small-eared galago 13 13
No Yes Microcebus murinus 69_1 Gray mouse lemur 14 14
No Yes Rattus norvegicus 69_3.4 Norway rat 20 20
No Yes Mus musculus 69_38 House mouse 17 17
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 13 13
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 16 16
No Yes Cavia porcellus 69_3 Domestic guinea pig 15 15
No Yes Oryctolagus cuniculus 69_2 Rabbit 13 13
No Yes Ochotona princeps 69 American pika 13 13
No Yes Tupaia belangeri 69 Northern tree shrew 9 9
No Yes Sus scrofa 69_10.2 Pig 17 17
No Yes Bos taurus 69_3.1 Cattle 13 13
No Yes Vicugna pacos 69_1 Alpaca 11 11
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 15
No Yes Mustela putorius furo 69_1.0 Domestic ferret 14 14
No Yes Ailuropoda melanoleuca 69_1 Giant panda 15 15
No Yes Canis familiaris 69_3.1 Dog 14 14
No Yes Felis catus 69 Domestic cat 9 9
No Yes Equus caballus 69_2 Horse 14 13
No Yes Myotis lucifugus 69_2.0 Little brown bat 12 12
No Yes Pteropus vampyrus 69_1 Large flying fox 14 14
No Yes Sorex araneus 69_1 European shrew 8 8
No Yes Erinaceus europaeus 69 Western European hedgehog 11 11
No Yes Procavia capensis 69_1 Cape rock hyrax 12 12
No Yes Loxodonta africana 69_3 African savanna elephant 13 13
No Yes Echinops telfairi 69 Small Madagascar hedgehog 12 12
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 11 11
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 10 10
No Yes Macropus eugenii 69_1.0 Tammar wallaby 13 13
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 17 17
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 15 15
No Yes Ornithorhynchus anatinus 69_5 Platypus 10 10
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 11 11
No Yes Gallus gallus 69_2 Chicken 12 12
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 12 12
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 13 13
No Yes Anolis carolinensis 69_2.0 Green anole 12 12
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 16 16
No Yes Latimeria chalumnae 69_1 Coelacanth 10 9
No Yes Gadus morhua 69_1 Atlantic cod 11 11
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 13 13
No Yes Takifugu rubripes 69_4 Torafugu 11 11
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 14 14
No Yes Oryzias latipes 69_1 Japanese medaka 15 15
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 16
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 13 13
No Yes Danio rerio 69_9 Zebrafish 16 16
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 11 10
No Yes Ciona intestinalis 69 Vase tunicate 11 11
No Yes Drosophila melanogaster 69_5 Fruit fly 20 20
No Yes Caenorhabditis elegans 69_215 Roundworm 11 11
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 5 5
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   2 2
No Yes 3_050719R (meta-genome)   4 4
No Yes 4_050719Q (meta-genome)   3 3
No Yes 5_050719P (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   13 13
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   17 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   9 9
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   5 5
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   10 10
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   11 11
No Yes NCBI 2017_08 genome   30782 30742
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   15 15
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   22 22
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   19 19
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   29 29
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   40 40
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1464 1456
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   13 13
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   22481 22308
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   99 90
No Yes NCBI plasmid sequences (Plasmids)   12 12
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   16 16
No Yes Protein Data Bank (all PDB sequenc)   110 110
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   212 212
No Yes TargetDB (Targets)   162 162

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