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Methyl-coenzyme M reductase subunits superfamily domain assignments
in
all bacterial and archaeal genomes

Network of domain occurrence in all genomes


Assignment details

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25 selected genomes have 94 significant domains in 94 proteins.

Showing genomes 1 to 25 of 52
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Methanocella arvoryzae MRE50 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|147919724|ref|YP_686530.1|   1.84e-142   4-275   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|147919725|ref|YP_686529.1|   3.26e-125   6-251   Methyl-coenzyme M reductase gamma chain  
gi|147919728|ref|YP_686526.1|   2.51e-78   2-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanocella conradii HZ254 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383319342|ref|YP_005380183.1|   1.02e-78   2-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|383319345|ref|YP_005380186.1|   6.28e-123   6-251   Methyl-coenzyme M reductase gamma chain  
gi|383319346|ref|YP_005380187.1|   1.33e-143   4-275   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanocella paludicola SANAE has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|282163182|ref|YP_003355567.1|   2.83e-78   2-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|282163185|ref|YP_003355570.1|   2.24e-120   6-251   Methyl-coenzyme M reductase gamma chain  
gi|282163186|ref|YP_003355571.1|   2.04e-140   4-276   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosaeta harundinacea 6Ac has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386001201|ref|YP_005919500.1|   1.73e-76   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|386001203|ref|YP_005919502.1|   3.1e-103   3-236   Methyl-coenzyme M reductase gamma chain  
gi|386001204|ref|YP_005919503.1|   2.55e-142   6-277   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosaeta thermophila PT has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116753882|ref|YP_843000.1|   2.67e-143   6-277   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|116753883|ref|YP_843001.1|   2.79e-116   6-255   Methyl-coenzyme M reductase gamma chain  
gi|116753885|ref|YP_843003.1|   1.29e-75   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosaeta concilii GP6 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|330506955|ref|YP_004383383.1|   1.1e-139   4-277   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|330506956|ref|YP_004383384.1|   2.16e-107   6-255   Methyl-coenzyme M reductase gamma chain  
gi|330506958|ref|YP_004383386.1|   1.37e-71   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
 
Weak hits:
gi|330507455|ref|YP_004383883.1|   0.0942   73-100   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosalsum zhilinae DSM 4017 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336476793|ref|YP_004615934.1|   5.89e-77   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|336476796|ref|YP_004615937.1|   1.26e-127   2-247   Methyl-coenzyme M reductase gamma chain  
gi|336476797|ref|YP_004615938.1|   1.33e-145   4-284   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
 
Weak hits:
gi|336476964|ref|YP_004616105.1|   0.0184   5-98   Methyl-coenzyme M reductase gamma chain  

Methanohalobium evestigatum Z-7303 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|298674844|ref|YP_003726594.1|   4.71e-141   5-285   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|298674845|ref|YP_003726595.1|   5.1e-121   5-248   Methyl-coenzyme M reductase gamma chain  
gi|298674848|ref|YP_003726598.1|   1.53e-73   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanococcoides burtonii DSM 6242 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|91774326|ref|YP_567018.1|   6.28e-147   3-284   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|91774327|ref|YP_567019.1|   1.29e-127   2-248   Methyl-coenzyme M reductase gamma chain  
gi|91774330|ref|YP_567022.1|   8.24e-76   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosarcina acetivorans C2A has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|20093330|ref|NP_619405.1|   6.28e-144   6-283   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|20093331|ref|NP_619406.1|   2.98e-124   2-247   Methyl-coenzyme M reductase gamma chain  
gi|20093334|ref|NP_619409.1|   2.08e-74   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosarcina mazei Go1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|21227342|ref|NP_633264.1|   7.46e-143   5-283   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|21227343|ref|NP_633265.1|   1.06e-123   5-250   Methyl-coenzyme M reductase gamma chain  
gi|21227346|ref|NP_633268.1|   1.33e-74   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosarcina barkeri str. Fusaro has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|73668432|ref|YP_304447.1|   4.32e-145   5-283   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|73668433|ref|YP_304448.1|   3.26e-125   2-247   Methyl-coenzyme M reductase gamma chain  
gi|73668436|ref|YP_304451.1|   1.06e-73   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanohalophilus mahii DSM 5219 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|294495289|ref|YP_003541782.1|   2.71e-140   3-285   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|294495290|ref|YP_003541783.1|   4.71e-126   3-247   Methyl-coenzyme M reductase gamma chain  
gi|294495293|ref|YP_003541786.1|   5.89e-78   1-185   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanosphaerula palustris E1-9c has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|219852881|ref|YP_002467313.1|   7.46e-77   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|219852884|ref|YP_002467316.1|   9.03e-124   6-253   Methyl-coenzyme M reductase gamma chain  
gi|219852885|ref|YP_002467317.1|   1.06e-140   5-278   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanoregula boonei 6A8 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|154150125|ref|YP_001403743.1|   5.1e-143   7-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|154150126|ref|YP_001403744.1|   1.33e-123   6-253   Methyl-coenzyme M reductase gamma chain  
gi|154150129|ref|YP_001403747.1|   6.67e-78   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanospirillum hungatei JF-1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|88603391|ref|YP_503569.1|   1.61e-73   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|88603394|ref|YP_503572.1|   9.42e-121   6-251   Methyl-coenzyme M reductase gamma chain  
gi|88603395|ref|YP_503573.1|   1.22e-144   5-278   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanocorpusculum labreanum Z has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|124485886|ref|YP_001030502.1|   3.37e-72   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|124485887|ref|YP_001030503.1|   1.22e-117   6-252   Methyl-coenzyme M reductase gamma chain  
gi|124485888|ref|YP_001030504.1|   5.1e-144   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|124486376|ref|YP_001030992.1|   1.18e-143   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|124486377|ref|YP_001030993.1|   8.63e-120   6-252   Methyl-coenzyme M reductase gamma chain  
gi|124486380|ref|YP_001030996.1|   1.57e-74   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanoplanus petrolearius DSM 11571 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|307354128|ref|YP_003895179.1|   1.33e-142   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|307354129|ref|YP_003895180.1|   1.1e-117   4-250   Methyl-coenzyme M reductase gamma chain  
gi|307354130|ref|YP_003895181.1|   1.06e-70   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|307354548|ref|YP_003895599.1|   3.92e-143   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|307354549|ref|YP_003895600.1|   5.1e-119   6-251   Methyl-coenzyme M reductase gamma chain  
gi|307354552|ref|YP_003895603.1|   4.32e-64   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanoculleus bourgensis MS2 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|397780687|ref|YP_006545160.1|   1.49e-141   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|397780688|ref|YP_006545161.1|   1.61e-122   6-252   Methyl-coenzyme M reductase gamma chain  
gi|397780690|ref|YP_006545163.1|   4.32e-71   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|397780900|ref|YP_006545373.1|   1.37e-74   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|397780903|ref|YP_006545376.1|   1.41e-122   6-252   Methyl-coenzyme M reductase gamma chain  
gi|397780904|ref|YP_006545377.1|   9.03e-141   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanoculleus marisnigri JR1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126178325|ref|YP_001046290.1|   8.63e-72   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|126178327|ref|YP_001046292.1|   4.32e-120   6-252   Methyl-coenzyme M reductase gamma chain  
gi|126178328|ref|YP_001046293.1|   2.2e-142   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|126178563|ref|YP_001046528.1|   3.14e-142   5-279   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|126178564|ref|YP_001046529.1|   4.71e-123   6-252   Methyl-coenzyme M reductase gamma chain  
gi|126178567|ref|YP_001046532.1|   1.81e-73   3-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanopyrus kandleri AV19 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|20094089|ref|NP_613936.1|   8.24e-78   5-189   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|20094092|ref|NP_613939.1|   1.45e-127   6-252   Methyl-coenzyme M reductase gamma chain  
gi|20094093|ref|NP_613940.1|   4.71e-142   5-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|20094923|ref|NP_614770.1|   7.46e-16   7-63   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Thermoplasmatales archaeon BRNA1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|474934049|ref|YP_007687631.1|   1.1e-65   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|474934051|ref|YP_007687633.1|   2.12e-110   8-254   Methyl-coenzyme M reductase gamma chain  
gi|474934052|ref|YP_007687634.1|   1.53e-118   5-270   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanotorris igneus Kol 5 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|333910330|ref|YP_004484063.1|   1.73e-80   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|333910332|ref|YP_004484065.1|   1.29e-125   5-249   Methyl-coenzyme M reductase gamma chain  
gi|333910333|ref|YP_004484066.1|   9.81e-144   4-271   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|333911102|ref|YP_004484835.1|   1.02e-81   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|333911105|ref|YP_004484838.1|   5.89e-127   5-252   Methyl-coenzyme M reductase gamma chain  
gi|333911106|ref|YP_004484839.1|   2.59e-145   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanocaldococcus sp. FS406-22 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|289191913|ref|YP_003457854.1|   9.42e-144   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|289191914|ref|YP_003457855.1|   2.24e-124   6-250   Methyl-coenzyme M reductase gamma chain  
gi|289191915|ref|YP_003457856.1|   1.14e-81   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|289192787|ref|YP_003458728.1|   2.98e-145   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|289192788|ref|YP_003458729.1|   1.26e-126   6-253   Methyl-coenzyme M reductase gamma chain  
gi|289192791|ref|YP_003458732.1|   4.71e-79   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

Methanocaldococcus fervens AG86 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|256810883|ref|YP_003128252.1|   4.32e-79   3-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
gi|256810886|ref|YP_003128255.1|   1.33e-126   6-253   Methyl-coenzyme M reductase gamma chain  
gi|256810887|ref|YP_003128256.1|   5.89e-145   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  

  1 2 3   Next Last
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Select to display   Genome       Domains   Proteins
No Yes ALL   5562 5562
No Yes Methanocella arvoryzae MRE50   3 3
No Yes Methanocella conradii HZ254   3 3
No Yes Methanocella paludicola SANAE   3 3
No Yes Methanosaeta harundinacea 6Ac   3 3
No Yes Methanosaeta thermophila PT   3 3
No Yes Methanosaeta concilii GP6   3 3
No Yes Methanosalsum zhilinae DSM 4017   3 3
No Yes Methanohalobium evestigatum Z-7303   3 3
No Yes Methanococcoides burtonii DSM 6242   3 3
No Yes Methanosarcina acetivorans C2A   3 3
No Yes Methanosarcina mazei Go1   3 3
No Yes Methanosarcina barkeri str. Fusaro   3 3
No Yes Methanohalophilus mahii DSM 5219   3 3
No Yes Methanosphaerula palustris E1-9c   3 3
No Yes Methanoregula boonei 6A8   3 3
No Yes Methanospirillum hungatei JF-1   3 3
No Yes Methanocorpusculum labreanum Z   6 6
No Yes Methanoplanus petrolearius DSM 11571   6 6
No Yes Methanoculleus bourgensis MS2   6 6
No Yes Methanoculleus marisnigri JR1   6 6
No Yes Methanopyrus kandleri AV19   4 4
No Yes Thermoplasmatales archaeon BRNA1   3 3
No Yes Methanotorris igneus Kol 5   6 6
No Yes Methanocaldococcus sp. FS406-22   6 6
No Yes Methanocaldococcus fervens AG86   3 3
No Yes Methanocaldococcus vulcanius M7   6 6
No Yes methanocaldococcus infernus ME   3 3
No Yes Methanocaldococcus jannaschii DSM 2661   6 6
No Yes Methanothermococcus okinawensis IH1   3 3
No Yes Methanococcus aeolicus Nankai-3   3 3
No Yes Methanococcus maripaludis C5   3 3
No Yes Methanococcus voltae A3   3 3
No Yes Methanococcus vannielii SB   3 3
No Yes Methanothermus fervidus DSM 2088   6 6
No Yes Methanothermobacter marburgensis str. Marburg   6 6
No Yes Methanothermobacter thermautotrophicus str. Delta H   6 6
No Yes Methanosphaera stadtmanae DSM 3091   3 3
No Yes Methanobrevibacter sp. AbM4   3 3
No Yes Methanobrevibacter ruminantium M1   3 3
No Yes Methanobrevibacter smithii ATCC 35061   6 6
No Yes Complete genome sequence of Methanobacterium sp. Mb1   6 6
No Yes Methanomethylovorans hollandica DSM 15978   3 3
No Yes Methanolobus psychrophilus R15   3 3
No Yes Methanosarcina mazei Tuc01   3 3
No Yes Methanoregula formicica Methanoregula formicicum SMSP   6 6
No Yes Candidatus Methanomethylophilus alvus Mx1201   3 3
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   3 3
No Yes Methanococcus maripaludis X1   3 3
No Yes Methanococcus maripaludis C6   3 3
No Yes Methanococcus maripaludis C7   3 3
No Yes Methanococcus maripaludis S2   3 3
No Yes Methanobacterium sp. SWAN-1   3 3
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   33 33
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Human Gut Community Subject 7 (meta-genome)   3 3
No Yes Human Gut Community Subject 8 (meta-genome)   3 3
No Yes NCBI 2017_08 genome   817 816
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   12 12
No Yes STRING v9.0.5 (STRING)   94 94
No Yes Uniprot 2018_03 genome   3619 3619
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   21 21
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   150 150
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   428 428

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