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Methyl-coenzyme M reductase subunits superfamily domain assignments
in
Protein Data Bank

Network of domain occurrence in all genomes


Assignment details

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Protein Data Bank (all PDB sequenc) has 150 significant domains in 150 proteins.

     

Sequence ID   Evalue   Region   Family  
1e6v_A   8.03e-141   5-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6v_B   1.2e-114   6-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6v_C   4.02e-199   4-254   Methyl-coenzyme M reductase gamma chain  
1e6v_D   8.03e-141   5-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6v_E   1.2e-114   6-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6v_F   4.02e-199   4-254   Methyl-coenzyme M reductase gamma chain  
1e6y_A   4.45e-145   4-282   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6y_B   6.83e-116   1-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6y_C   8.2e-188   1-246   Methyl-coenzyme M reductase gamma chain  
1e6y_D   4.45e-145   4-282   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6y_E   6.83e-116   1-188   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1e6y_F   8.2e-188   1-246   Methyl-coenzyme M reductase gamma chain  
1hbm_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbm_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbm_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbm_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbm_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbm_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbn_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbn_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbn_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbn_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbn_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbn_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbo_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbo_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbo_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbo_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbo_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbo_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbu_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbu_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbu_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1hbu_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbu_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1hbu_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
1mro_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1mro_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1mro_C   3.18e-199   1-246   Methyl-coenzyme M reductase gamma chain  
1mro_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1mro_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
1mro_F   3.18e-199   1-246   Methyl-coenzyme M reductase gamma chain  
3m1v_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m1v_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m1v_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m1v_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m1v_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m1v_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m2r_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2r_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2r_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m2r_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2r_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2r_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m2u_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2u_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2u_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m2u_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2u_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2u_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m2v_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2v_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2v_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m2v_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2v_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m2v_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m30_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m30_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m30_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m30_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m30_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m30_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m32_A   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m32_B   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m32_C   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3m32_D   2.47e-144   2-268   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m32_E   2.73e-133   2-186   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3m32_F   1.67e-199   1-248   Methyl-coenzyme M reductase gamma chain  
3pot_A   2.47e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3pot_B   2.73e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3pot_C   1.84e-199   2-249   Methyl-coenzyme M reductase gamma chain  
3pot_D   2.47e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3pot_E   2.73e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
3pot_F   1.84e-199   2-249   Methyl-coenzyme M reductase gamma chain  
3sqg_A   9.66e-124   7-283   SCOPe  
3sqg_B   2.93e-108   3-183   SCOPe  
3sqg_C   2.93e-175   2-258   Methyl-coenzyme M reductase gamma chain  
3sqg_D   9.66e-124   7-283   SCOPe  
3sqg_E   2.93e-108   3-183   SCOPe  
3sqg_F   2.93e-175   2-258   Methyl-coenzyme M reductase gamma chain  
3sqg_G   9.66e-124   7-283   SCOPe  
3sqg_H   2.93e-108   3-183   SCOPe  
3sqg_I   2.93e-175   2-258   Methyl-coenzyme M reductase gamma chain  
5a0y_A   2.47e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a0y_B   2.73e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a0y_C   1.84e-199   2-249   Methyl-coenzyme M reductase gamma chain  
5a0y_D   2.47e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a0y_E   2.73e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a0y_F   1.84e-199   2-249   Methyl-coenzyme M reductase gamma chain  
5a8k_A   3.22e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8k_B   7.03e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8k_C   1.37e-199   2-249   Methyl-coenzyme M reductase gamma chain  
5a8k_D   3.22e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8k_E   7.03e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8k_F   1.37e-199   2-249   Methyl-coenzyme M reductase gamma chain  
5a8r_A   2.11e-140   2-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8r_B   2.93e-120   4-193   SCOPe  
5a8r_C   1.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8r_D   2.11e-140   2-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8r_E   2.93e-120   4-193   SCOPe  
5a8r_F   1.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8r_G   2.11e-140   2-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8r_H   2.93e-120   4-193   SCOPe  
5a8r_I   1.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8r_J   2.11e-140   2-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8r_K   2.93e-120   4-193   SCOPe  
5a8r_L   1.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8w_A   1.12e-140   1-273   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8w_B   5.86e-120   4-193   SCOPe  
5a8w_C   2.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8w_D   1.12e-140   1-273   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8w_E   5.86e-120   4-193   SCOPe  
5a8w_F   2.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8w_G   1.12e-140   1-273   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8w_H   5.86e-120   4-193   SCOPe  
5a8w_I   2.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5a8w_J   1.12e-140   1-273   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5a8w_K   5.86e-120   4-193   SCOPe  
5a8w_L   2.51e-204   3-264   Methyl-coenzyme M reductase gamma chain  
5g0r_A   2.47e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5g0r_B   2.73e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5g0r_C   1.84e-199   2-249   Methyl-coenzyme M reductase gamma chain  
5g0r_D   2.47e-144   3-269   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5g0r_E   2.73e-133   3-187   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5g0r_F   1.84e-199   2-249   Methyl-coenzyme M reductase gamma chain  
5n1q_A   4.25e-140   4-273   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5n1q_B   3.32e-121   2-188   SCOPe  
5n1q_C   4.85e-199   2-252   SCOPe  
5n1q_D   4.25e-140   4-273   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5n1q_E   3.32e-121   2-188   SCOPe  
5n1q_F   4.85e-199   2-252   SCOPe  
5n28_A   1.85e-145   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5n28_B   3.51e-126   2-193   SCOPe  
5n28_C   4.69e-202   2-253   SCOPe  
5n28_D   1.85e-145   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5n28_E   3.51e-126   2-193   SCOPe  
5n28_F   4.69e-202   2-253   SCOPe  
5n2a_A   1.85e-145   4-272   Methyl-coenzyme M reductase alpha and beta chain N-terminal domain  
5n2a_B   3.51e-126   2-193   SCOPe  
5n2a_C   4.69e-202   2-253   SCOPe  

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Select to display   Genome       Domains   Proteins
No Yes ALL   5562 5562
No Yes Methanocella arvoryzae MRE50   3 3
No Yes Methanocella conradii HZ254   3 3
No Yes Methanocella paludicola SANAE   3 3
No Yes Methanosaeta harundinacea 6Ac   3 3
No Yes Methanosaeta thermophila PT   3 3
No Yes Methanosaeta concilii GP6   3 3
No Yes Methanosalsum zhilinae DSM 4017   3 3
No Yes Methanohalobium evestigatum Z-7303   3 3
No Yes Methanococcoides burtonii DSM 6242   3 3
No Yes Methanosarcina acetivorans C2A   3 3
No Yes Methanosarcina mazei Go1   3 3
No Yes Methanosarcina barkeri str. Fusaro   3 3
No Yes Methanohalophilus mahii DSM 5219   3 3
No Yes Methanosphaerula palustris E1-9c   3 3
No Yes Methanoregula boonei 6A8   3 3
No Yes Methanospirillum hungatei JF-1   3 3
No Yes Methanocorpusculum labreanum Z   6 6
No Yes Methanoplanus petrolearius DSM 11571   6 6
No Yes Methanoculleus bourgensis MS2   6 6
No Yes Methanoculleus marisnigri JR1   6 6
No Yes Methanopyrus kandleri AV19   4 4
No Yes Thermoplasmatales archaeon BRNA1   3 3
No Yes Methanotorris igneus Kol 5   6 6
No Yes Methanocaldococcus sp. FS406-22   6 6
No Yes Methanocaldococcus fervens AG86   3 3
No Yes Methanocaldococcus vulcanius M7   6 6
No Yes methanocaldococcus infernus ME   3 3
No Yes Methanocaldococcus jannaschii DSM 2661   6 6
No Yes Methanothermococcus okinawensis IH1   3 3
No Yes Methanococcus aeolicus Nankai-3   3 3
No Yes Methanococcus maripaludis C5   3 3
No Yes Methanococcus voltae A3   3 3
No Yes Methanococcus vannielii SB   3 3
No Yes Methanothermus fervidus DSM 2088   6 6
No Yes Methanothermobacter marburgensis str. Marburg   6 6
No Yes Methanothermobacter thermautotrophicus str. Delta H   6 6
No Yes Methanosphaera stadtmanae DSM 3091   3 3
No Yes Methanobrevibacter sp. AbM4   3 3
No Yes Methanobrevibacter ruminantium M1   3 3
No Yes Methanobrevibacter smithii ATCC 35061   6 6
No Yes Complete genome sequence of Methanobacterium sp. Mb1   6 6
No Yes Methanomethylovorans hollandica DSM 15978   3 3
No Yes Methanolobus psychrophilus R15   3 3
No Yes Methanosarcina mazei Tuc01   3 3
No Yes Methanoregula formicica Methanoregula formicicum SMSP   6 6
No Yes Candidatus Methanomethylophilus alvus Mx1201   3 3
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   3 3
No Yes Methanococcus maripaludis X1   3 3
No Yes Methanococcus maripaludis C6   3 3
No Yes Methanococcus maripaludis C7   3 3
No Yes Methanococcus maripaludis S2   3 3
No Yes Methanobacterium sp. SWAN-1   3 3
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   33 33
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Human Gut Community Subject 7 (meta-genome)   3 3
No Yes Human Gut Community Subject 8 (meta-genome)   3 3
No Yes NCBI 2017_08 genome   817 816
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   12 12
No Yes STRING v9.0.5 (STRING)   94 94
No Yes Uniprot 2018_03 genome   3619 3619
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   21 21
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   150 150
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   428 428

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